SNP_IGA_4008, SNP_IGA_4008 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_4008
dbSNP IDN/A
SNP Array ID
IRSC 16K SNP array for peach:SNP_IGA_4008
IRSC 9K SNP array for peach:SNP_IGA_4008
TypeSNP
SNP Alleles[T/G]
SpeciesPrunus persica
Primer 1SNP_IGA_4008_LEFT_primer_0: GTTCAGGTTGAGAAGGAGTTGG
Primer 2SNP_IGA_4008_RIGHT_primer_0: TCATGCAAGTGTGTCTTGACTG
Product Length233
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
SNP_IGA_4008_LEFT_primer_0SNP_IGA_4008_LEFT_primer_0Prunus persicaprimer
SNP_IGA_4008_RIGHT_primer_0SNP_IGA_4008_RIGHT_primer_0Prunus persicaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
SNP_IGA_4008SNP_IGA_4008-2.8Prunus persicamarker_locus
SNP_IGA_4008SNP_IGA_4008Prunus persicamarker_locus
SA4008SA4008Prunus persicamarker_locus


Sequence
>SNP_IGA_4008 ID=SNP_IGA_4008|Name=SNP_IGA_4008|organism=Prunus persica|type=genetic_marker|length=121bp
TGCAAACAATTGCTCAAGATTTGAATAAGAAGATGGAGACAAACAAGAAG
GGTAGAAAGGMAAATGGCACTGAATATGAAACAGTCAAGACACACTTGCA
TGAAGTTGAGGAGGCAGTTGT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach_Consensus_map_20181N/A2.8SNP_IGA_4008-2.8View
2Peach-VV-F2G1N/A2.9SNP_IGA_4008View
3Peach-WB-F2-2015LG1N/A2.63SNP_IGA_4008View
4Prunus-TE-F2-20151N/A1.2SA4008View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:1364709..1364709. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:1364569..1364569. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)