SNP_IGA_435668, SNP_IGA_435668 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_435668
dbSNP IDN/A
SNP Array ID
IRSC 16K SNP array for peach:SNP_IGA_435668
IRSC 9K SNP array for peach:SNP_IGA_435668
TypeSNP
SNP Alleles[T/G]
SpeciesPrunus persica
Primer 1SNP_IGA_435668_LEFT_primer_0: GCCAATATATCCTGCAAACCTC
Primer 2SNP_IGA_435668_RIGHT_primer_0: AGCAGGGGAGGATTTTGTTAAT
Product Length257
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
SNP_IGA_435668_LEFT_primer_0SNP_IGA_435668_LEFT_primer_0Prunus persicaprimer
SNP_IGA_435668_RIGHT_primer_0SNP_IGA_435668_RIGHT_primer_0Prunus persicaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
SNP_IGA_435668SNP_IGA_435668-14.16Prunus persicamarker_locus
SNP_IGA_435668SNP_IGA_435668-11.316Prunus persicamarker_locus
SNP_IGA_435668SNP_IGA_435668Prunus persicamarker_locus
SA435668SA435668Prunus persicamarker_locus


Sequence
>SNP_IGA_435668 ID=SNP_IGA_435668|Name=SNP_IGA_435668|organism=Prunus persica|type=genetic_marker|length=121bp
CCTGCAAACCTCCATCCTCCGGCCAATATATGAGGCCACCAGGCCATCCT
CAATTCCTAAMAGACAGTTCTCGTGGCAAAAACCAGGAGAAATCTTAGGA
CTCAAGTGCTGCTCATCAAGA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach_Consensus_map_20181N/A14.16SNP_IGA_435668-14.16View
2Peach-ZC-F2-20181N/A11.32SNP_IGA_435668-11.316View
3Peach-WB-F2-2015LG1N/A15.58SNP_IGA_435668View
4Peach-PF-BC1-2017LG1N/A16.9SNP_IGA_435668View
5Peach-PF-F1-2017LG1N/A20.5SNP_IGA_435668View
6Prunus-TE-F2-20151N/A7.1SA435668View
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:16597198..16597198. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:5595695..5595695. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)