SNP_IGA_6055, SNP_IGA_6055 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_6055
dbSNP IDN/A
SNP Array ID
IRSC 16K SNP array for peach:SNP_IGA_6055
IRSC 9K SNP array for peach:SNP_IGA_6055
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_6055_LEFT_primer_0: CTTCCCTTTCACAGAAACAACC
Primer 2SNP_IGA_6055_RIGHT_primer_0: AATCCACTCATTGTCTTTGCCT
Product Length267
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
SNP_IGA_6055_LEFT_primer_0SNP_IGA_6055_LEFT_primer_0Prunus persicaprimer
SNP_IGA_6055_RIGHT_primer_0SNP_IGA_6055_RIGHT_primer_0Prunus persicaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
SNP_IGA_6055SNP_IGA_6055-5.1Prunus persicamarker_locus
SNP_IGA_6055SNP_IGA_6055Prunus persicamarker_locus
SA6055SA6055Prunus persicamarker_locus


Sequence
>SNP_IGA_6055 ID=SNP_IGA_6055|Name=SNP_IGA_6055|organism=Prunus persica|type=genetic_marker|length=121bp
AACCGAAAAAGAACTCTCAAATTCTCATGGACATAAATGGGTTGGCAATG
TAGTCAAAGARATTCACCCGACTCTACCCAACATGGTAAGTTACTTTTAA
CTAATAAACCAAAGTGCATAT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach_Consensus_map_20181N/A5.1SNP_IGA_6055-5.1View
2Peach-OC-F21N/A6.3SNP_IGA_6055View
3Peach-VV-F2G1N/A4.7SNP_IGA_6055View
4Peach-WB-F2-2015LG1N/A4.79SNP_IGA_6055View
5Peach-PF-BC1-2017LG1N/A8.3SNP_IGA_6055View
6Peach-PF-F1-2017LG1N/A9.2SNP_IGA_6055View
7Prunus-TE-F2-20151N/A1.2SA6055View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:2005627..2005627. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:2005484..2005484. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)