SNP_IGA_7895, SNP_IGA_7895 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_7895
AliasSA7895
dbSNP IDN/A
SNP Array ID
IRSC 16K SNP array for peach:SNP_IGA_7895
IRSC 9K SNP array for peach:SNP_IGA_7895
TypeSNP
SNP Alleles[T/G]
SpeciesPrunus persica
Source TypeWGS
Primer 1SNP_IGA_7895_LEFT_primer_0: CAGGAGAGAAGCTCCAAAAGAA
Primer 2SNP_IGA_7895_RIGHT_primer_0: GAATTTGGTGTTGATGGTGGAC
Product Length299
Publication[view all]
ContactPere Arus
Ksenija Gasic
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
SNP_IGA_7895_LEFT_primer_0SNP_IGA_7895_LEFT_primer_0Prunus persicaprimer
SNP_IGA_7895_RIGHT_primer_0SNP_IGA_7895_RIGHT_primer_0Prunus persicaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
SNP_IGA_7895SNP_IGA_7895Prunus persicamarker_locus
SNP_IGA_7895SNP_IGA_7895Prunus spp.marker_locus
SA7895SA7895Prunus spp.marker_locus


Sequence
>SNP_IGA_7895 ID=SNP_IGA_7895|Name=SNP_IGA_7895|organism=Prunus persica|type=genetic_marker|length=121bp
GTGGTAGTTCAATCCTTAGTTTCGAAGACAGATTTTTCTTGAATACATCA
AATTTGGGAAMCAAGTCCTTGGCAGCAGGTCCACCATCAACACCAAATTC
ATTGAACCTGAATATACAGAT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-V6xG-F1-V61N/A4.3SNP_IGA_7895View
2Peach-Armking-F1G1.1N/A4SNP_IGA_7895View
3Peach-WB-F2-2015LG1N/A6.52SNP_IGA_7895View
4Peach-PF-BC1-2017LG1N/A9.9SNP_IGA_7895View
5Prunus-TE-F2-20151N/A2.2SA7895View
6Prunus-TE-BC1-T1EG1_T1EN/A2.1SA7895View
7Prunus-TE-BC1-EG1_EN/A5.9SA7895View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:2459127..2459127. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:2458924..2458924. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)