RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1, RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1
Aliasss475878975
rs267611921
R_5120857_L8_PA
dbSNP IDss475878975
SNP Array ID
480K SNP array for apple:AX-115197725
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1
20K SNP array for apple:RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1.probe: TAATTATCTTTGTCTTCTTCTTGGGAGGTGCTGCCACGGGACATCCATCG
5' Flanking SequenceCACCTCATTAGCCCATGACAAGCCGACTCCTAGCCCCTGCCAACCGACGTGCCGTACCAC C
3' Flanking SequenceCGATGGATGTCCCGTGGCAGCACCTCCCAAGAAGAAGACAAAGATAATTAAGTTTTTCTT A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1-7.445Malus x domesticamarker_locus
RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1Malus x domesticamarker_locus


The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1.probeMalus x domesticaprobe


Sequence
>RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1 ID=RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1|Name=RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
CTCCTAGCCCCTGCCAACCGACGTGCCGTACCACC[C/T]CGATGGATGT
CCCGTGGCAGCACCTCCCAAGAAGA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-Honeycrisp_Consensus-F18N/A7.45RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1-7.445View
2Apple-M432-20138N/A12.35RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1View
3Apple-M432-2013-physical-Malus-domestica8N/A5120857RosBREEDSNP_SNP_TC_5120857_Lg8_01378_MAF50_29486_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC011277.211 contig MDC011277.211:31174..31174. Malus x domestica Whole Genome v1.0 Assembly & Annotation