RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1, RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1
Aliasss475878979
rs267611925
R_5166014_L8_PA
dbSNP IDss475878979
SNP Array ID
480K SNP array for apple:AX-105202048
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1.probe: AAGGTTTTCGAGCAAGATATGGGATTTCTATCGTCGCAGAACGAGATACT
5' Flanking SequenceAGAATGCCGGCAAGGTTTTCGAGCAAGATATGGGATTTCTATCGTCGCAGAACGAGATAC T
3' Flanking SequenceATGAAAGAAAAAGTACCAACCAAAGAGCTGTACCTGAACCTGAAATCTTCAGACACTTGG G
SpeciesMalus x domestica
PolymorphismP_ RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1-7.445Malus x domesticamarker_locus
RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1Malus x domesticamarker_locus


The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1.probeMalus x domesticaprobe


Sequence
>RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1 ID=RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1|Name=RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
GATATGGGATTTCTATCGTCGCAGAACGAGATACT[C/T]ATGAAAGAAA
AAGTACCAACCAAAGAGCTGTACCT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-Honeycrisp_Consensus-F18N/A7.45RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1-7.445View
2Apple-M432-20138N/A12.08RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1View
3Apple-M432-2013-physical-Malus-domestica8N/A5166014RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1View
4Apple-RGTxGD-F1-2015RGT_8N/A9.72RosBREEDSNP_SNP_CT_5166014_Lg8_01378_MAF30_1645550_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC010648.242 contig MDC010648.242:11936..11936. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr08 chromosome Chr08:4079378..4079378+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation