RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1, RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1
Aliasss475876745
rs267609692
R_14657993_L1_PA
dbSNP IDss475876745
SNP Array ID
480K SNP array for apple:AX-115183293
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1
20K SNP array for apple:RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1
TypeSNP
SNP AllelesA/C
Probe 1RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1.probe: TTAGGATCTGACCTGGAAACCTACGGAACCCCAACCTTCTCCGAAGTCTC
5' Flanking SequenceTCCTGCAGAGCTTGAATGACCGAGTCAGTGAGCTCGAGTTGCGGTTCGATCGGCCGACGA A
3' Flanking SequenceGAGACTTCGGAGAAGGTTGGGGTTCCGTAGGTTTCCAGGTCAGATCCTAAGGTGGGATTT G
SpeciesMalus x domestica
PolymorphismP_ RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1-15.457Malus x domesticamarker_locus
RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1Malus x domesticamarker_locus


The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1.probeMalus x domesticaprobe


Sequence
>RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1 ID=RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1|Name=RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
AGTGAGCTCGAGTTGCGGTTCGATCGGCCGACGAA[G/T]GAGACTTCGG
AGAAGGTTGGGGTTCCGTAGGTTTC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-Honeycrisp_Consensus-F11N/A15.46RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1-15.457View
2Apple-M432-20131N/A25.09RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1View
3Apple-M432-2013-physical-Malus-domestica1N/A14657993RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1View
4Apple-RGTxGD-F1-2015RGT_1N/A13.85RosBREEDSNP_SNP_GT_14657993_Lg1_RosCOS1779_MAF30_MDP0000119296_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC004266.140 contig MDC004266.140:50491..50491. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:18963688..18963688- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation