MDC012282.661, MDC012282.661 (contig) Malus x domestica

Contig Overview
NameMDC012282.661
Unique NameMDC012282.661
Typecontig
OrganismMalus x domestica (Apple)
Sequence length6998
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
Alignments
Feature NameTypeLocationAnalysis
MDP0000298156 mRNA MDP0000298156:943..4618- Malus x domestica Whole Genome v1.0 Assembly & Annotation
MDP0000298156_exon_1 CDS MDP0000298156_exon_1:4548..4618- Malus x domestica Whole Genome v1.0 Assembly & Annotation
MDP0000298156_exon_2 CDS MDP0000298156_exon_2:2837..3015- Malus x domestica Whole Genome v1.0 Assembly & Annotation
MDP0000298156_exon_3 CDS MDP0000298156_exon_3:1642..1805- Malus x domestica Whole Genome v1.0 Assembly & Annotation
MDP0000298156_exon_4 CDS MDP0000298156_exon_4:1516..1580- Malus x domestica Whole Genome v1.0 Assembly & Annotation
MDP0000298156_exon_5 CDS MDP0000298156_exon_5:943..1018- Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_22820602_Lg4_02025_MAF10_MDP0000185953_exon1 genetic_marker RosBREEDSNP_SNP_TC_22820602_Lg4_02025_MAF10_MDP0000185953_exon1:4423..4423. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_22823285_Lg4_02025_MAF30_MDP0000166471_exon3 genetic_marker RosBREEDSNP_SNP_AG_22823285_Lg4_02025_MAF30_MDP0000166471_exon3:1740..1740. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_22771895_Lg3 genetic_marker RosBREEDSNP_SNP_AG_22771895_Lg3:4423..4423. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_22820602_Lg4 genetic_marker RosBREEDSNP_SNP_TC_22820602_Lg4:4423..4423. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_22821038_Lg4 genetic_marker RosBREEDSNP_SNP_AG_22821038_Lg4:3987..3987. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GT_22821068_Lg4 genetic_marker RosBREEDSNP_SNP_GT_22821068_Lg4:3957..3957. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_22821096_Lg4 genetic_marker RosBREEDSNP_SNP_AG_22821096_Lg4:3929..3929. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CA_22821122_Lg4 genetic_marker RosBREEDSNP_SNP_CA_22821122_Lg4:3903..3903. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_22821144_Lg4 genetic_marker RosBREEDSNP_SNP_TC_22821144_Lg4:3881..3881. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_22821160_Lg4 genetic_marker RosBREEDSNP_SNP_TC_22821160_Lg4:3865..3865. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_22821285_Lg4 genetic_marker RosBREEDSNP_SNP_CT_22821285_Lg4:3740..3740. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_22821293_Lg4 genetic_marker RosBREEDSNP_SNP_TC_22821293_Lg4:3732..3732. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_22821302_Lg4 genetic_marker RosBREEDSNP_SNP_CT_22821302_Lg4:3723..3723. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_22821349_Lg4 genetic_marker RosBREEDSNP_SNP_GA_22821349_Lg4:3676..3676. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_22821429_Lg4 genetic_marker RosBREEDSNP_SNP_AG_22821429_Lg4:3596..3596. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_22821574_Lg4 genetic_marker RosBREEDSNP_SNP_CT_22821574_Lg4:3451..3451. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_22821575_Lg4 genetic_marker RosBREEDSNP_SNP_GA_22821575_Lg4:3450..3450. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GT_22821602_Lg4 genetic_marker RosBREEDSNP_SNP_GT_22821602_Lg4:3423..3423. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CA_22821607_Lg4 genetic_marker RosBREEDSNP_SNP_CA_22821607_Lg4:3418..3418. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_22821628_Lg4 genetic_marker RosBREEDSNP_SNP_AG_22821628_Lg4:3397..3397. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_22821648_Lg4 genetic_marker RosBREEDSNP_SNP_CT_22821648_Lg4:3377..3377. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_22821669_Lg4 genetic_marker RosBREEDSNP_SNP_CT_22821669_Lg4:3356..3356. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TG_22821753_Lg4 genetic_marker RosBREEDSNP_SNP_TG_22821753_Lg4:3272..3272. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GT_22821859_Lg4 genetic_marker RosBREEDSNP_SNP_GT_22821859_Lg4:3166..3166. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_22821925_Lg4 genetic_marker RosBREEDSNP_SNP_AG_22821925_Lg4:3100..3100. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AC_22822825_Lg4 genetic_marker RosBREEDSNP_SNP_AC_22822825_Lg4:2200..2200. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GT_22823219_Lg4 genetic_marker RosBREEDSNP_SNP_GT_22823219_Lg4:1806..1806. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_22823232_Lg4 genetic_marker RosBREEDSNP_SNP_AG_22823232_Lg4:1793..1793. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_22823285_Lg4 genetic_marker RosBREEDSNP_SNP_AG_22823285_Lg4:1740..1740. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_22823393_Lg4 genetic_marker RosBREEDSNP_SNP_CT_22823393_Lg4:1632..1632. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_22823656_Lg4 genetic_marker RosBREEDSNP_SNP_AG_22823656_Lg4:1369..1369. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TG_22823858_Lg4 genetic_marker RosBREEDSNP_SNP_TG_22823858_Lg4:1167..1167. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AC_22824018_Lg4 genetic_marker RosBREEDSNP_SNP_AC_22824018_Lg4:1007..1007. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_14022195_Lg8 genetic_marker RosBREEDSNP_SNP_TC_14022195_Lg8:71..71. Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr4 chromosome chr4:20652466..20659463- Malus x domestica Whole Genome v1.0 Assembly & Annotation
Sequences
The following sequences are available for this feature:

contig sequence

>MDC012282.661 ID=MDC012282.661|Name=MDC012282.661|organism=Malus x domestica|type=contig|length=6998bp
CCTGAGCCTCTTGAACTTCAGAAGGTTTTACACAATGCTTTTGGAGAGAG
ATGAGGAAGTGATCACCGTCAGTAGCCTAAGGATCTACAGTGAGTTGGCG
GAAGTACCTCTGGTGGCAACTAGGTTCCATTATCGTAGACAAGGAATGTG
TCGTGTTATGATGGATGAGCTTGAAAACCAGCTCGTCAACTTGGGAGTTG
AGAGACTGATTTTGCCTTCTGCTTCTAGTACGCTGGATACATGGACTAGC
ACTTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAATTGGGGAACGTTGCCTCCGGTGACAAGTT
TTTGATTGATGTTGACTGCATGCTGTTGGACAACAACGAACCTAGTTTCT
CGGCATGGTACAACAAACAGAATTTTAGGTTGATTCCAGGATTTTGTTAG
GGTGTAACTATATAGGATAACTGAACAAATTATCGAGGGAAAAATTTGAC
CGGTACATTTGGTAATTATGTACAATTTTTTAATGTGTTATTAAACTAAA
TATCACTTATTAAATTTTATTTTTCGTTCAGAACAGACTCAGTTTTTCTT
GTTTTAATTCAACAGTGCACAAGTTTTTCCATGAATTTTTCCCTTGATTC
TACTTTAAGAATGAGTTTAAATGTACATGTATATACACGCCACAAGAAAA
TATAAACTTAACTAATCATTGTGCCTATCAAATACAGCCCCTTAGATCTA
AAAGCAAAACAGGAAACTCCGAGAAAGACAAAGGTGCTCTACCTAGCGGA
AATGAGGATCACAAGCACAGCGGATGCTAGTCACTCCAATTATCCTCGTC
CTTGGATGGTCCTTTATCCTGCATTTCCAAACATGCATCAGATACAAGCC
GCTAAGCAACTAATAAGGTTAGATACACAAAATTATCAGGTGTCCCACCT
CATTGGAAACCATTCTTGGCGGCGACCAAACTAGAATTTGTCTATCATCG
CCACCAGTGTACAATTACTGCAATGAGAGACATGAATTACAATTCATACA
GGATTCAAAAATCATCAATAATCCATAGATAACAAGGTGAGCTCATGGAA
TAAATAAATTAACGGAGGAAAACTTCAACAGGCTTTGTAATTTTAAATCT
GATCTTAGAACAGTTGGAAAAAGGGCTTACAACTCCCGTTAATTGACATA
GAAGTTGGAGCAACTGACTTTAATATTAAATGCCATTTTAGTTTATAAAG
CATTGATTGGAAAAGACCTATAGAAAAATCGTAAATTGTTTGAAGAGTAC
TCGATCCTGTGAACTAAACCAGCAACAGTTTACATGTTCATAGTGACCTT
TCAGGGATGTTTTACCTGACCACGTATCGAATGCCTGAAGAACAAAATCT
GGATGTCAAACGTTGATGTTTGTAGAGATGCTTGTATTTTAATCCACATG
TACAATTCAAAAGACTCAAACCTACGAAAAGGATGCATTACCTTCACAGC
TGTCATGCATGGAACAAAAACAAGCTCCGAATTCTGACTTGTAGCTAACT
GTACGGGCTTGCTGCTTTGCATACGCACAGTTTCAAAGTTCACCAAAGTA
TTGCAGCCAGATTCTATATCCCACAAGTCTTGAATCGGAACCTGAAATGC
AAAAGCTCGATCAATGACATCGGCAGTGAGGAATGAATGAAAAACCAATT
AGACTAACTTATGCACGAAAGGAATGAATCAAACATTAGGAAACTAAGGT
GTAAGATCCCCTATGCATGATTTTCTCTTTTTATTTTTATTTTCTGTTGG
AGGTCGTATTCTGAAGAGTGATCTATATGACCAGTGGCGGATCCAGGAAA
TAATGTTTGAGGGGTCATTAAGGATAGCGCGCGCAGCGCGAAATTTTTTT
TTAACAGAAACGGCATGCATATCGTCATTTCATCGGGTCTTGGTAGGATA
GCGCGACCAGCTACTCCAAAATCCTTGTTCAAAATCCTACATTCCAACTC
TACATCTGCAAAGAACAATGAAAAAATAAAATAAAAAGCAGAGCCTTTCT
GTTCCACTAGCAAAGGCACAAAAATAAGGCTCTGTGCAAAATAAGGTCGA
AAGGACACGCTTGGTATTTTTGKTTTTGTTCAGACCTGCCCAGGACACGC
TGGGCATTTYTTTTTGTTTAAACCTGGCCCAAAACAACGTCGTTTTGGCC
AGGTCATTTAAAAAAATTTCCTGGGCCAAAACGACGTCGTTTTGCCCAGG
TTTTTTTTAAAAACAAACTGGCGCCACAGCGCCTTCGTCTTCTTCATCCA
ACCTGCCCAGACCGACGACCTTTCGTCGAACAGTTGGTGTGCAGCGAACG
GGGTCGCACCAGGGGTCGCACCACCAGTCCAAGGGGTCTCTAAGGTTGCT
TCCATGGCTTCCAAGGGGTCGCGCGACCCCAATGACCCCACTGTGGATCC
GCCACTGTGTATGACACCAGCGAATCGGGTTAAACTGCAATAATTCTGTG
ATAAAGTGTAAACTAATGGATATAATTAAAAAAGTAAACAGTGAACCTGA
AACACTATGATTAGTATGAACATTAACTCGGTTAAGGGGACTCAAACATA
GGATAGACAATTYAAATGGATTTCCTTCTCAAGCATAACAAACCTCCAAA
ATTAAATCACTCAACCTGCACTTAAGAGGTACACACCATCTTCAGTGACT
TTTAATCCAGTAACAGCACCGTAATGAGCAGTGACACGATACTGACTAGA
CAGCATCCCTGGATGTAATCTTTGCTTCATAGATCCCTTTACTGGACCTT
TACCAATAGGTGAGTGCTTTTGCAGATGTGCTTTGACTTGGGGACGAGGA
CTTAACCTTTGAACCCTGAGCCAGACATAAAATCAAATATTATCAGTAAA
AGGAAAAGTTCAACATACCATTTTCTCCATTTAAAACTAGATTCTCCTAT
TGACTACAAGCTTCAATAACAAACATTGCTAATAATGCAATGAAGTTATA
ATTGAAATTTGAAAACGAGGGAACTCGGGACTTATACAAGCAAATAGACA
TCGCATATAATGGGTTGTGCATTCACACTGTATCTTCAGTGTGGGTCATC
GTATTGATTGAGATCTCATCAAGTTTCATTGTCATAAAAGTCACAGATCC
ATGTGACACCAACAAGTTTAGCTGTGTTCAACTTTGTGTTGAATAAAACG
GAGAAGAATAACATGACAGGAGTGAAGGAAAGCATAAAAACTTTTTTCAG
TACCAATGATTTAATAGGTTAACAAAGAGGAAACAACATTTCCCAAAAAC
GTATATAAAACCATTTCAGAAATGCTGGTGAAATAGGCTAACTAACAGCG
AAGCAAATAATATTAAAAAAAAACTGAGCAAAATAAGTACGCTATAAGTA
ATTTGAAAACAAACTTTTTTGGCTCAGCCAAGAAAAGAAGAAAACTTTAA
CTGTGGCAGAGCGTTTCAGGATGGGTGGACGTCTCCCTAGCTGAGACTGA
GATTGATCCAAAACAAGAAAAAATCCGGCACGTCTAATGTCCCAAAAACG
TATTGCACCATCACATCCACCTGTAAGCAAAACCCACTCGCTAGAAGTAG
ACCATTCCACAGTCATCACACCATCTGCCATCAAGAAAATACAGCACTTA
GGACCCTCTACATGCACGAAACTTTATTCTACGTTATATGTTAAAACTTA
AACCCAAGAAACAAAACTAAAAACACTTGTACTTTTGTAAACAAAAACTA
GAGAACCCAAAGGAAGAATATGAATCTATCAAGAGCAGAAACCTAGCTTT
ACGATACTAAGGTTCTAAGCATGAATCCCGCCAACATGGTGTATTGTAAA
TTTCCTGCTGTCCACAATTACAGGGTTCAACCAGAAAATCCAAATGCTAC
AAATTACAAAATGCTGAGAAAACCGACTAGGCTGGATTGTTTAAAGAAGT
GAATTTTCGCAACATTCRTGACTGTCCACCCTAWATTTCAAGAACAACCC
CTTCTTATATCCTCAATATTGTCATCCAAAATGTTTCATGTGTTCACATA
ACCATGATAAGAAGTTTAAATTTTGTAACTTTCTATGTATCAAGYGTGCG
TCAAAYGTCRAATTCTATGAATTTTGGGACATACCGCGGTGGCCAGACAA
GGTGTGAGCAAAAGCCCCAGAGGCAATATCACAGAGGTGGACTTGAACAT
CTTCGGTTYYGGCAGCAATGAGCATGTGAGAAGTTGCCAACGGCGACATT
GCAGTCCGGTACATCTTCCCCGACATCTTGAAGTCCATAACTACCTGAGT
CGTATTCGTGTCCCAAACATTGATGTGATGATCGTACKACCCCGTCACAA
ACAGTYCRRTGTTGACGGGATACCACAYKSCGRAGGACACYGCGTACTTA
TGCCCGTGCTCGTGCTRCTTATCCATCGCAAGCAGGCACTTATGCCTCGT
GATAGCTCCGCCGCCCATGTTATCGGTCCCGCGCTAGACATCAAACACGG
TGACGGAAGCATCGGAGACGCCGGATAACATGTACTGGCCCTCTGTCAAA
TCGAACTAGAGAGAGTTGCGGAGCCTCGATGAGGGGAGATGATGTCTTTG
TAGTTGGAGAGTTGGAGTGTTTGGATAACAGGTACCAGCCCTCCGTCAAA
TCTACATGCCCAATACCTCGAAGGAAAGCTACTTGCTTTTTAGAGTATGC
ACCATAAAACTTAATCGATTTGAGTTTGCAAAAGAGCCACACAAACTCTC
TATATTGTTGGGCAACTTCAACTTTCCTAGCTTGGGAAATAATCCTGAAA
CATTACAGGCCAATGTGGGGATGTTTTACAACAGGCATGGCAAAAACTAT
TGGGTCTTCAATAACTTTTATTCATTTGAGCAGAAAGAAATGTTCTATTT
TGCTTGATAAATTTCAATAGAAGTACACTTACTAGGGTGTAAATATGTGG
ATACTTCAATGGTAGAAAAACATCACTTGGGTATTTACCTAGATCAGGTT
CTTGTAGATAGGGGTAGAAATCAAAGACTTGTGGGGAGGTGAATTCATTT
ATCTCATACTCGTCCTGATATTGCATATGATGTGAGTGTTGTAAGTTAGT
TTATGCACTCGCCTAGTGAAGATCACATAGTTGTGGTAATGTGAATTTTG
ACATATCTGAAGTCTGCATCTGGTAAAGGAATACTTTATGGAAAAGCATG
AGCATCTAAAAGTTGAGGGGTTTACATATGCAGATTGGGCTCGCAATGCT
ACTGACAGACAATCTACATCTAGGTATTTTACGTTTGTTGGAGGTAATTT
GGTTACATATCATAGTAAGAAGCATAAAGTGGTGTCAATGTCGTTTGCGG
AAGCTAAGTATAGAGGTATGACACATAGAATGTGAACTTCTTTAGTTACG
TAAACTTTTGAGATGTCTTGGTTTTGAACTAAAGGAGACTATGTAATTAT
ATTGTGACAATAAATCTGCAAGGGAGATAGTTGACAATAAATATGTATGT
GGAAATTATCGACACTTTGTCAAGGAAAATATTGAAAAGAAAATTGTCTC
TATAACGTTTGTGAGTTCATGAAAGCTTCTTGCTCATGCAATATCTAGTA
AGGTTTTTCAAGATTTAATCATCAAGTTGGGCATATATGATATGTATGCA
CTAACTTGAAGGAGAGTGTTGATTTGAGTCTTAATTGTAAATGTTATTGG
AGTCATGTTTTAAGTAGGATGAGAATGTGTAATCTTTAGGATTTAATGTC
CTTACATTTTGCAATTACTTTCCTTATAGAATAAGATATATGTGCCTATA
TATTATAAAATCCTAAAGGATCCCTCCAACCTCATCTTTCCAAATTCACT
CATTTTTCTCTAATTTTAGTACATACACCATCAGACTCCTTTTATGTTTC
CTTCGTGTTTGATCGAAGTTCCAACCACTCTATTCTTCTAGGGGTGGGCA
TAAAACCGCCAACCGAAAAACTGAATCGAACCGTGAMAAAAAAAAMCGTG
TTGACCAAAAAAGTCAAAACCAGAACAAAAACCAAACCGTTTCAAACAGT
TCTGGTTTCAGTTTGGAAATATTAAGAACCGAAGGAACCGGACCAAACCT
CTTTTAATATAAATTATTGTTTTATTATTATTTTTATATAAATAAGACAT
TTTTCCAAGAAGACCATGTGCATAAGCCCAATATTTTTCTTCACTTCTCT
TCCCCTCCTTTGTTGTTTTATCACTTTTCTCCCCCTACATTATTTTTTTC
CATTCTTTTCCAGTATATTATGCATTATGTCCATTTTAGTTTTAGTTTAA
GATCTACACTCTGGTCTCGATATGAGCCGTTCTATCTTTATATATATATA
TATATATATATATATATATATGCACAATTTCTATCATCCGATCACAAATC
TTGTAGATCTAGTAGTGGAAACTCAAATTTACTTGAATTTGTGGTTGAAA
TATGTGTTTGGTATTAGAAGTAGAAAATTAGAAAAAAATATATATATAAT
TTTGGTTGGAACCGTAAACCGGCATGAACTAAACCAGAACAGTCATGAAT
CGAACCGTACGGTTTTAGTAATAAATTTAAACGAAACCACACCGAACCAA
TCCGTTGAAAATTTTCAGTTTCGATTCTATTTTGAGGATGGAACGGACCG
AACGGGACCGTGCCCACCTTTATATTCTTCCATCACACTCATCTTTTATT
TATTTTTTATTTTCAATCCGCCACTGATCTTCTCTTATAATTCCCCCCCA
AACGAACCCAATCTCTACCATCTTTCTTTTAAACCTTCCATTCTCGTTAT
TTTCTTACAACTGGCCCCCTCCTTCATCACTCTTTCTTTTTCTNTTCC
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