Hi02c07, Hi02c07 (genetic_marker) Malus x domestica

Marker Overview
NameHi02c07
AliasHi02c07_FM
Hi02c07b
Hi02c07
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1Hi02c07.primer 1: AGAGCTACGGGGATCCAAAT
Primer 2Hi02c07.primer 2: GTTTAAGCATCCCGATTGAAAGG
Product Length108-149
PolymorphismP_ Hi02c07
Publication[view all]
ContactT. Yamamoto
A. Patocchi
Andreas Peil
Miyuki Kunihisa
Zhen Han
Ana Wünsch
Contact
NameDetails
T. Yamamoto
First name:Toshiya
Last name:Yamamoto
Title:researcher
Institution:National Institute of Fruit Tree Science, Japan
Address:National Institute of Fruit Tree Science Fujimoto 2-1, Tsukuba Ibaraki 305-8605, Japan
Email:toshiya@affrc.go.jp
Phone:81-29-838-6474,6491
Keywords:Pyrus pyrifolia
A. Patocchi
First name:Andrea
Last name:Patocchi
Institution:Agroscope Changins-W?denswil Research Station ACW
Address:Standort W?denswil Schloss Postfach 185 8820 W?denswil
Country:SWITZERLAND
Email:andrea.patocchi@acw.admin.ch
Phone:+41 44 783 6313
Fax:+41 (0)44 783 63 05
Andreas Peil
First name:Andreas
Last name:Peil
Title:Researcher
Institution:Institute for Breeding Research on Fruit
Address:Kulius Kuhn-Institut (JKI), Pillnitzer Platz 3a, 01326
Country:Dresden, Germany
Email:andreas.peil@jki.bund.de
Miyuki Kunihisa
First name:Miyuki
Last name:Kunihisa
Institution:NARO Institute of Fruit Tree Science
Address:2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:Japan
Email:miyuky@affrc.go.jp
Phone:81-29-838-6437
Keywords:fruit drop
Zhen Han
First name:Zhen
Last name:Han
Institution:Institute for Horticultural Plants, China Agricultural University
Address:Beijing 100193, China
Country:China
Email:rschan@cau.edu.cn
Keywords:apple
Ana Wünsch
First name:Ana
Last name:Wünsch
Title:researcher
Institution:CITA Aragon
Address:Avda. Montañana 930
Country:Spain
Email:awunsch@aragon.es
Phone:+34 976 713591
Keywords:cherry
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
primer 1Hi02c07.primer 1Malus x domesticaprimer
primer 2Hi02c07.primer 2Malus x domesticaprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
phenolic compound contentqPHE.X5210X8402-LG1.F09.reynoutrinMalus x domesticaQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Hi02c07Hi02c07-68.25Malus x domesticamarker_locus
Hi02c07-m1Hi02c07-m1-14.7Malus x domesticamarker_locus
Hi02c07Hi02c07Malus x domesticamarker_locus
Hi02c07bHi02c07bMalus x domesticamarker_locus


Publications
YearPublication
2006Terakami S, Shoda M, Adachi Y, Gonai T, Kasumi M, Sawamura Y, Iketani H, Kotobuki K, Patocchi A, Gessler C, Hayashi T, Yamamoto T. Genetic mapping of the pear scab resistance gene Vnk of Japanese pear cultivar Kinchaku. Theoretical and Applied Genetics. 2006 Aug; 113(4):743-752.
2009Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2014Wöhner TW, Flachowsky H, Richter K, Garcia-Libreros T, Trognitz F, Hanke M, Peil A. QTL mapping of fire blight resistance in Malus ×robusta 5 after inoculation with different strains of Erwinia amylovora. Molecular breeding. 2014; 34(1):217-230.
2014Emeriewen O, Richter K, Kilian A, Zini E, Hanke M, Malnoy M, Peil A. Identification of a major quantitative trait locus for resistance to fire blight in the wild apple species Malus fusca. Molecular breeding. 2014; 34(2):407-419.
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2014Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.
2015Cui MS, Yang LL, Han YY, Zhang Q, Zhao YB, Li CM, Han YP, Wang Y, Chen DM, Yang FQ, Zhang XZ, Han ZH. Genetic mapping reveals sophisticated responses of Malus domestica to Botryosphaeria dothidea isolates. Journal of Phytopathology. 2015; 163:42–53.
2011Characterization and mapping of non-S gametophytic self-compatibility in sweet cherry (Prunus avium L.). 2011. Journal of Experimental Botany. 62(6): 1847–1856.
2015Ben Sadok I, Tiecher A, Galvez-Lopez D, Lahaye M, Lasserre-Zuber P, Bruneau M, Hanteville S, Robic R, Cournol R, Laurens F. Apple fruit texture QTLs: year and cold storage effects on sensory and instrumental traits. Tree Genetics & Genomes 2015 11:119
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2004Plant Breeding, 123(4):321
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Pear-integrated_consensus_map-IPCG-2017LG1N/A68.25Hi02c07-68.25View
2Pear-Ba-F1-2013Ba1N/A14.7Hi02c07-m1-14.7View
3Apple-FD-F1-2006F1N/A23.1Hi02c07View
4Apple Integrated map1N/A16.4Hi02c07View
5Pear-Kin1b-F1Kin1bN/A13.1Hi02c07View
6Apple-IM-F1-IdaredIda LG 1N/A9.3Hi02c07View
7Apple-IM-F1-Mr5Mr5 LG 1N/A31.1Hi02c07View
8Apple-MM-F11N/A10Hi02c07View
9Apple-OA-F1-OrinOR1N/A14.4Hi02c07View
10Apple-JGD-F1-FRRG1N/A6.9Hi02c07View
11Apple-GDxA-F1LG1AN/A0Hi02c07View
12Apple-GDxA-F1LG1BN/A0Hi02c07View
13Apple-GDxA-F1LG1CN/A0Hi02c07View
14Apple-X3259X3263-F11N/A19.1Hi02c07View
15Apple-GDxJ-F1-2012LG1N/A33.8Hi02c07View
16Apple-M432-2012LG1N/A10.4Hi02c07View
17Apple-RGTxGD-F1-2015GD_1N/A14.04Hi02c07View
18Apple-RGxPI6-F1LG1N/A18.3Hi02c07View
19Apple-X5210X8402-F1-ConsensusLG1N/A9.5Hi02c07View
20Apple-X5210X8402-F1-X5210LG1N/A7.9Hi02c07View
21Apple-X5210X8402-F1-X8402LG1N/A9.8Hi02c07View
22Apple-MAL0045_x_Idared-F1-MfuscaLG1N/A17.5Hi02c07bView