FAD2, KC702671.1-FAD2.m1 (mRNA) Malus baccata

Transcript Overview
NameFAD2
Unique NameKC702671.1-FAD2.m1
TypemRNA
OrganismMalus baccata ()
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
FAD2FAD2Malus baccatagene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KC702671.1-FAD2.m1-cds1KC702671.1-FAD2.m1-cds1Malus baccataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
FAD2KC702671.1-FAD2.p1Malus baccatapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI575498385
nuccoreKC702671.1
Alignments
Feature NameTypeLocationAnalysis
KC702671 region KC702671:1..1149+ NCBI Rosaceae gene and mRNA sequences
Chr12 chromosome Chr12:6578245..6579393- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr9 chromosome chr9:10738063..10739211+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr9 chromosome chr9:11322769..11323917+ Malus x domestica Whole Genome v1.0p Assembly & Annotation
Properties
Property NameValue
Productendoplasmic reticulum 18:1 desaturase
Sourcegenbank
Genbank noteMbFAD2
Sequences
The following sequences are available for this feature:

mRNA sequence

>KC702671.1-FAD2.m1 ID=KC702671.1-FAD2.m1|Name=FAD2|organism=Malus baccata|type=mRNA|length=1149bp
atgggtgccggtggaagaatggttgcgcctcctgtgcgcaaaaatgcgga
tgctgacacccacaagagagttccgtactctaagcctccgttcagcctcg
gtgaggtcaagaaagccatcccacctcattgttttcagcgctctgttatc
cgctccttctcctatgtcttttatgacctcaccattgcctctatccttta
ctacattgcttccacctacattcagaatctgtctcaacctctatccttct
tggcatggccgattttctggtacgttcagggctgtgttctcaccggtgtt
tgggtcatagcacatgagtgcggtcaccatgctttcagtgattatcaatg
gctggatgacactgttggtttgatcctccactcttgcctccttgtcccgt
acttctcatggaagtatagccatcgccgccaccattccaacacagcttcc
cttgagcgagatgaagtctttgtccccaagcagaagttcgaaattggatg
gcatgccaaatatctcaacaatccgccaggcagattcctcacactcctca
tccaactcactctaggctggcctttgtatcttgcgttcaatgtttctgga
aggccctacaaaggatttgcttgccactttcatccgtatgggccaatcta
ctctgatcgcgaacgattgcagatatttgtgtccgatgctggtgttcttg
ctgtcgtctatgggctttaccgtcttgccgttgcaaaggggcttgcttgg
gttatatgcttctacggaggtcctctaatggtggtgaatggatttttggt
actgatcacgtacttgcagcacacccaccccgcattgccgcactatgatt
cctctgaatgggactggtttaggggagctttggccaccgttgacagagac
tacggaatcctgaacaaggttttccacaacatcacagacactcacgttgc
gcaccatttgttctcaaccatgccgcactatcacgcaatggaggcgacca
aggcaatcaagccgatattgggcgagtactatcagttcgacgggactccg
gtttacaaggcaatgtttagagaggcgaaggagtgtatctacgtcgagcc
cgatgagggtgccaagaaaggtgtcttctggtacaataaaaagctgtga
back to top

protein sequence of FAD2

>KC702671.1-FAD2.p1 ID=KC702671.1-FAD2.p1|Name=FAD2|organism=Malus baccata|type=polypeptide|length=382bp
MGAGGRMVAPPVRKNADADTHKRVPYSKPPFSLGEVKKAIPPHCFQRSVI
RSFSYVFYDLTIASILYYIASTYIQNLSQPLSFLAWPIFWYVQGCVLTGV
WVIAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTAS
LERDEVFVPKQKFEIGWHAKYLNNPPGRFLTLLIQLTLGWPLYLAFNVSG
RPYKGFACHFHPYGPIYSDRERLQIFVSDAGVLAVVYGLYRLAVAKGLAW
VICFYGGPLMVVNGFLVLITYLQHTHPALPHYDSSEWDWFRGALATVDRD
YGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTP
VYKAMFREAKECIYVEPDEGAKKGVFWYNKKL
back to top

mRNA from alignment at KC702671:1..1149+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KC702671.1-FAD2.m1 ID=KC702671.1-FAD2.m1|Name=FAD2|organism=Malus baccata|type=mRNA|length=1149bp|location=Sequence derived from alignment at KC702671:1..1149+ (Malus baccata)
atgggtgccggtggaagaatggttgcgcctcctgtgcgcaaaaatgcgga tgctgacacccacaagagagttccgtactctaagcctccgttcagcctcg gtgaggtcaagaaagccatcccacctcattgttttcagcgctctgttatc cgctccttctcctatgtcttttatgacctcaccattgcctctatccttta ctacattgcttccacctacattcagaatctgtctcaacctctatccttct tggcatggccgattttctggtacgttcagggctgtgttctcaccggtgtt tgggtcatagcacatgagtgcggtcaccatgctttcagtgattatcaatg gctggatgacactgttggtttgatcctccactcttgcctccttgtcccgt acttctcatggaagtatagccatcgccgccaccattccaacacagcttcc cttgagcgagatgaagtctttgtccccaagcagaagttcgaaattggatg gcatgccaaatatctcaacaatccgccaggcagattcctcacactcctca tccaactcactctaggctggcctttgtatcttgcgttcaatgtttctgga aggccctacaaaggatttgcttgccactttcatccgtatgggccaatcta ctctgatcgcgaacgattgcagatatttgtgtccgatgctggtgttcttg ctgtcgtctatgggctttaccgtcttgccgttgcaaaggggcttgcttgg gttatatgcttctacggaggtcctctaatggtggtgaatggatttttggt actgatcacgtacttgcagcacacccaccccgcattgccgcactatgatt cctctgaatgggactggtttaggggagctttggccaccgttgacagagac tacggaatcctgaacaaggttttccacaacatcacagacactcacgttgc gcaccatttgttctcaaccatgccgcactatcacgcaatggaggcgacca aggcaatcaagccgatattgggcgagtactatcagttcgacgggactccg gtttacaaggcaatgtttagagaggcgaaggagtgtatctacgtcgagcc cgatgagggtgccaagaaaggtgtcttctggtacaataaaaagctgtga
back to top

Coding sequence (CDS) from alignment at KC702671:1..1149+

>KC702671.1-FAD2.m1 ID=KC702671.1-FAD2.m1|Name=FAD2|organism=Malus baccata|type=CDS|length=1149bp|location=Sequence derived from alignment at KC702671:1..1149+ (Malus baccata)
atgggtgccggtggaagaatggttgcgcctcctgtgcgcaaaaatgcgga
tgctgacacccacaagagagttccgtactctaagcctccgttcagcctcg
gtgaggtcaagaaagccatcccacctcattgttttcagcgctctgttatc
cgctccttctcctatgtcttttatgacctcaccattgcctctatccttta
ctacattgcttccacctacattcagaatctgtctcaacctctatccttct
tggcatggccgattttctggtacgttcagggctgtgttctcaccggtgtt
tgggtcatagcacatgagtgcggtcaccatgctttcagtgattatcaatg
gctggatgacactgttggtttgatcctccactcttgcctccttgtcccgt
acttctcatggaagtatagccatcgccgccaccattccaacacagcttcc
cttgagcgagatgaagtctttgtccccaagcagaagttcgaaattggatg
gcatgccaaatatctcaacaatccgccaggcagattcctcacactcctca
tccaactcactctaggctggcctttgtatcttgcgttcaatgtttctgga
aggccctacaaaggatttgcttgccactttcatccgtatgggccaatcta
ctctgatcgcgaacgattgcagatatttgtgtccgatgctggtgttcttg
ctgtcgtctatgggctttaccgtcttgccgttgcaaaggggcttgcttgg
gttatatgcttctacggaggtcctctaatggtggtgaatggatttttggt
actgatcacgtacttgcagcacacccaccccgcattgccgcactatgatt
cctctgaatgggactggtttaggggagctttggccaccgttgacagagac
tacggaatcctgaacaaggttttccacaacatcacagacactcacgttgc
gcaccatttgttctcaaccatgccgcactatcacgcaatggaggcgacca
aggcaatcaagccgatattgggcgagtactatcagttcgacgggactccg
gtttacaaggcaatgtttagagaggcgaaggagtgtatctacgtcgagcc
cgatgagggtgccaagaaaggtgtcttctggtacaataaaaagctgtga
back to top