C4H, HM204477.1-C4H.m1 (mRNA) Prunus armeniaca

Transcript Overview
NameC4H
Unique NameHM204477.1-C4H.m1
TypemRNA
OrganismPrunus armeniaca (Apricot)
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
C4HHM204477.1-C4HPrunus armeniacagene


This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
C4HC4HPrunus armeniacagene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
HM204477.1-C4H.m1-cds1HM204477.1-C4H.m1-cds1Prunus armeniacaCDS
HM204477.1-C4H.m1-cds2HM204477.1-C4H.m1-cds2Prunus armeniacaCDS
HM204477.1-C4H.m1-cds3HM204477.1-C4H.m1-cds3Prunus armeniacaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
C4HHM204477.1-C4H.p1Prunus armeniacapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI326649993
nuccoreHM204477.1
Alignments
Feature NameTypeLocationAnalysis
HM204477 region HM204477:103..2856+ NCBI Rosaceae gene and mRNA sequences
scaffold_6 supercontig scaffold_6:2187091..2189969- Prunus persica Whole Genome v1.0 Assembly & Annotation
Properties
Property NameValue
Productcinnamate 4-hydroxylase
Sourcegenbank
Sequences
The following sequences are available for this feature:

mRNA sequence

>HM204477.1-C4H.m1 ID=HM204477.1-C4H.m1|Name=C4H|organism=Prunus armeniaca|type=mRNA|length=1515bp
atggacctactcctcctggaaaagaccctcctgggtctcttcatcgccgt
catcgtcgcaatcactatttcgaagctccgtggcaagcggttcaagctcc
cgcccggtccgatacccgtaccagttttcggaaactggctccaggtcggc
gacgacctcaatcaccggaacctcaccgacctcgcgaaaaagttcggcga
catcttcctcctccgcatggggcagcgcaatttggtggtggtctcgtccc
ctgacctcgccaaggaggtcctccacacccagggcgtcgaattcgggtcg
aggacacgaaacgtcgtgttcgatattttcaccggtgagggccaggatat
ggtgttcacggtctacggtgagcactggaggaagatgaggcggatcatga
ccgttcctttcttcactaacaaggtcgtgcagcagtataggcacggctgg
gaatcggaggcagcggcggtggttgaggacgtgaagaagtacccggggtc
tgcgaccaatgggatggtgctgcggaggcggttgcagctgatgatgtaca
acaacatgtaccggattatgttcgatcggaggttcgagagcgaggaggat
cctctgtttatgaagctcaaggggttgaatggggagaggagccgattggc
tcagagcttcgattacaattatggagattttatccccattttgagaccct
tcttgagaggctacttgaagatctgcaaagaggtcaaggagaagagaatt
cggctgttcaaggactactttgttgatgaacggaagaaactttcaagcac
aaaaacgacaacaaatgaaggactgaagtgcgccatcgaccatatcctgg
acgctcagcagaagggagagatcaacgaggacaacgtcctttacatcgtc
gagaacatcaacgttgctgcaattgaaacaacactatggtcaattgagtg
ggggattgcagagcttgtgaaccaccctgagatccaaaagaagctgaggg
atgagcttgactcagtgcttggccctggtgttcaaatcacagagccagag
atccagaagcttccctaccttcaagctgtgatcaaagagactctcaggct
tcgcatggcaatcccattgcttgtcccacacatgaatctcaacgatgcaa
agctgggcagctacgacattccagcggagagcaagatcctggtgaatgca
tggtggctggcaaacaaccctgccctctggaagaagcctgaggagtttag
gccagagaggtttttggaggaagaggccaaggttgaggccaatggcaatg
actttaggtaccttccatttggtgttgggagaagaagctgtccagggatt
attttggcccttccaattcttgggatcactttgggacgtttagtccagaa
ctttgagctcttgcctcctcctggacagtccaagcttgacaccacagaga
aaggtgggcagttcagcttgcacattttgaagcactctaccattgtgttg
aagccaaggtcatag
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protein sequence of C4H

>HM204477.1-C4H.p1 ID=HM204477.1-C4H.p1|Name=C4H|organism=Prunus armeniaca|type=polypeptide|length=504bp
MDLLLLEKTLLGLFIAVIVAITISKLRGKRFKLPPGPIPVPVFGNWLQVG
DDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGS
RTRNVVFDIFTGEGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGW
ESEAAAVVEDVKKYPGSATNGMVLRRRLQLMMYNNMYRIMFDRRFESEED
PLFMKLKGLNGERSRLAQSFDYNYGDFIPILRPFLRGYLKICKEVKEKRI
RLFKDYFVDERKKLSSTKTTTNEGLKCAIDHILDAQQKGEINEDNVLYIV
ENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDSVLGPGVQITEPE
IQKLPYLQAVIKETLRLRMAIPLLVPHMNLNDAKLGSYDIPAESKILVNA
WWLANNPALWKKPEEFRPERFLEEEAKVEANGNDFRYLPFGVGRRSCPGI
ILALPILGITLGRLVQNFELLPPPGQSKLDTTEKGGQFSLHILKHSTIVL
KPRS
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mRNA from alignment at HM204477:103..2856+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>HM204477.1-C4H.m1 ID=HM204477.1-C4H.m1|Name=C4H|organism=Prunus armeniaca|type=mRNA|length=2754bp|location=Sequence derived from alignment at HM204477:103..2856+ (Prunus armeniaca)
atggacctactcctcctggaaaagaccctcctgggtctcttcatcgccgt catcgtcgcaatcactatttcgaagctccgtggcaagcggttcaagctcc cgcccggtccgatacccgtaccagttttcggaaactggctccaggtcggc gacgacctcaatcaccggaacctcaccgacctcgcgaaaaagttcggcga catcttcctcctccgcatggggcagcgcaatttggtggtggtctcgtccc ctgacctcgccaaggaggtcctccacacccagggcgtcgaattcgggtcg aggacacgaaacgtcgtgttcgatattttcaccggtgagggccaggatat ggtgttcacggtctacggtgagcactggaggaagatgaggcggatcatga ccgttcctttcttcactaacaaggtcgtgcagcagtataggcacggctgg gaatcggaggcagcggcggtggttgaggacgtgaagaagtacccggggtc tgcgaccaatgggatggtgctgcggaggcggttgcagctgatgatgtaca acaacatgtaccggattatgttcgatcggaggttcgagagcgaggaggat cctctgtttatgaagctcaaggggttgaatggggagaggagccgattggc tcagagcttcgattacaattatggagattttatccccattttgagaccct tcttgagaggctacttgaagatctgcaaagaggtcaaggagaagagaatt cggctgttcaaggactactttgttgatgaacggaagtaagattttttttt ttttttacttaattcaattttgttatttatgttgaaaaacattagtgtct aattagtaaaagataaaaatgaaactgttactggaactctaatttgtcgt cctgcattgaaaaagaaacgaataagaatgacaaactgatagtgtaaata agtattactggtcaaatataccacgttagtagcatgagtattatgaatgg tttccttttttgggtctaatggaaattttttttttccactttcaaaatat gtgaagttttctatttttatagaatatttgattatatctgaaatgaaatt tgattttaattgttgagcaggaaactttcaagcacaaaaacgacaacaaa tgaaggactgaagtgcgccatcgaccatatcctggacgctcagcagaagg gagagatcaacgaggacaacgtcctttacatcgtcgagaacatcaacgtt gctggtaagtggggccctcacttccctagtctcctaatttttaccacagc aacacagtgccatgcatttttactgctttacccaattttttcgagaggtt attatgggaaatgccaatggcgcttctcttaaaattttcacatgatttat gcagaacaaacaaaaaataaatcctataaaacttaccgttcataattgca agcctgcgaaattcggtgcccttgtcgccggtgtttattgtgaggataaa ttttttgacctgttcttccactcttttattttatattttcttacaaataa tattacaattaatcctagattttatttaaatcgcaattaaaacattaacg ggtctagttgagtgaaaaagtgaattgacatgcagattagagggcttaag ttcgaaccccataatatcttggttacaagacaaaattgattatttcaacg ccaacttagaactcattttaagtatttaagttattttcaactctatttta acccaaaccattggttgtcctgcatcgtgacatgattccttttcaggtta ggtgataaatatttgtttaaatctgaatatgtcaaatccactttattagg tgcatctaggtgaacaaaacatgtggcttcaatgttaatacatacaacct agcaactttcttgggtttccttataatgatggaaacatacacatcttatc ctctacattagttaaacttcattttatgtacaatccactttcttcttgcc aacccctgtgacattgactgccaactcactttccatttggacactacaga ttaatcacagtctgatatatgtgcataaactttactctttgtaattttaa taacgtatctaactcgttacagataatcagagtctaatatattttttttg attaacagcaattgaaacaacactatggtcaattgagtgggggattgcag agcttgtgaaccaccctgagatccaaaagaagctgagggatgagcttgac tcagtgcttggccctggtgttcaaatcacagagccagagatccagaagct tccctaccttcaagctgtgatcaaagagactctcaggcttcgcatggcaa tcccattgcttgtcccacacatgaatctcaacgatgcaaagctgggcagc tacgacattccagcggagagcaagatcctggtgaatgcatggtggctggc aaacaaccctgccctctggaagaagcctgaggagtttaggccagagaggt ttttggaggaagaggccaaggttgaggccaatggcaatgactttaggtac cttccatttggtgttgggagaagaagctgtccagggattattttggccct tccaattcttgggatcactttgggacgtttagtccagaactttgagctct tgcctcctcctggacagtccaagcttgacaccacagagaaaggtgggcag ttcagcttgcacattttgaagcactctaccattgtgttgaagccaaggtc atag
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Coding sequence (CDS) from alignment at HM204477:103..2856+

>HM204477.1-C4H.m1 ID=HM204477.1-C4H.m1|Name=C4H|organism=Prunus armeniaca|type=CDS|length=1515bp|location=Sequence derived from alignment at HM204477:103..2856+ (Prunus armeniaca)
atggacctactcctcctggaaaagaccctcctgggtctcttcatcgccgt
catcgtcgcaatcactatttcgaagctccgtggcaagcggttcaagctcc
cgcccggtccgatacccgtaccagttttcggaaactggctccaggtcggc
gacgacctcaatcaccggaacctcaccgacctcgcgaaaaagttcggcga
catcttcctcctccgcatggggcagcgcaatttggtggtggtctcgtccc
ctgacctcgccaaggaggtcctccacacccagggcgtcgaattcgggtcg
aggacacgaaacgtcgtgttcgatattttcaccggtgagggccaggatat
ggtgttcacggtctacggtgagcactggaggaagatgaggcggatcatga
ccgttcctttcttcactaacaaggtcgtgcagcagtataggcacggctgg
gaatcggaggcagcggcggtggttgaggacgtgaagaagtacccggggtc
tgcgaccaatgggatggtgctgcggaggcggttgcagctgatgatgtaca
acaacatgtaccggattatgttcgatcggaggttcgagagcgaggaggat
cctctgtttatgaagctcaaggggttgaatggggagaggagccgattggc
tcagagcttcgattacaattatggagattttatccccattttgagaccct
tcttgagaggctacttgaagatctgcaaagaggtcaaggagaagagaatt
cggctgttcaaggactactttgttgatgaacggaagaaactttcaagcac
aaaaacgacaacaaatgaaggactgaagtgcgccatcgaccatatcctgg
acgctcagcagaagggagagatcaacgaggacaacgtcctttacatcgtc
gagaacatcaacgttgctgcaattgaaacaacactatggtcaattgagtg
ggggattgcagagcttgtgaaccaccctgagatccaaaagaagctgaggg
atgagcttgactcagtgcttggccctggtgttcaaatcacagagccagag
atccagaagcttccctaccttcaagctgtgatcaaagagactctcaggct
tcgcatggcaatcccattgcttgtcccacacatgaatctcaacgatgcaa
agctgggcagctacgacattccagcggagagcaagatcctggtgaatgca
tggtggctggcaaacaaccctgccctctggaagaagcctgaggagtttag
gccagagaggtttttggaggaagaggccaaggttgaggccaatggcaatg
actttaggtaccttccatttggtgttgggagaagaagctgtccagggatt
attttggcccttccaattcttgggatcactttgggacgtttagtccagaa
ctttgagctcttgcctcctcctggacagtccaagcttgacaccacagaga
aaggtgggcagttcagcttgcacattttgaagcactctaccattgtgttg
aagccaaggtcatag
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