COX1, EU701210.1-COX1.m1 (mRNA) Rubus occidentalis

Transcript Overview
NameCOX1
Unique NameEU701210.1-COX1.m1
TypemRNA
OrganismRubus occidentalis (Black raspberry)
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
COX1EU701210.1-COX1Rubus occidentalisgene


This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
COX1COX1Rubus occidentalisgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EU701210.1-COX1.m1-cds1EU701210.1-COX1.m1-cds1Rubus occidentalisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
COX1EU701210.1-COX1.p1Rubus occidentalispolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI187962341
nuccoreEU701210.1
Alignments
Feature NameTypeLocationAnalysis
EU701210 region EU701210:1..655+ NCBI Rosaceae gene and mRNA sequences
Properties
Property NameValue
Productcytochrome oxidase subunit 1
Sourcegenbank
Sequences
The following sequences are available for this feature:

mRNA sequence

>EU701210.1-COX1.m1 ID=EU701210.1-COX1.m1|Name=COX1|organism=Rubus occidentalis|type=mRNA|length=655bp
ggatatagggactctatatttcatcttcggtgctattgctggagtgatgg
gcacatgcttctcagtactgattcgtatggaattagcacgacccggcgat
caaattcttggtgggaatcatcaactttataatgttttaataacggctca
cgcttttttaatgatcttttttatggttatgccggcgatgataggtggat
ttggtaattggtttgttccgattctgataggtgcacctgacatggcattt
ccacgattaaataatatttcattctggttgttgccaccaagtctcttgct
cctattaagctcagccttagtagaagtgggtagcgggactgggtggacgg
tctatccgcccttaagtggtattaccagccattctggaggagctgttgat
ttagcaatttctagtcttcatctatctggtgtttcatccattttaggttc
tatcaattttataacaactatcttcaacatgcgtggacctggaatgacta
tgcatagattacccctatttgtgtggtccgttctagtgacagcattccta
cttttattatcacttcccgtactggcaggggcaattaccatgttattaac
cgatcgaaactttaatacaaccttttttgatcccgctggggggggagacc
ccata
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protein sequence of COX1

>EU701210.1-COX1.p1 ID=EU701210.1-COX1.p1|Name=COX1|organism=Rubus occidentalis|type=polypeptide|length=218bp
DIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAH
AFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLL
LLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAISSLHLSGVSSILGS
INFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLT
DRNFNTTFFDPAGGGDPI
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mRNA from alignment at EU701210:1..655+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EU701210.1-COX1.m1 ID=EU701210.1-COX1.m1|Name=COX1|organism=Rubus occidentalis|type=mRNA|length=655bp|location=Sequence derived from alignment at EU701210:1..655+ (Rubus occidentalis)
ggatatagggactctatatttcatcttcggtgctattgctggagtgatgg gcacatgcttctcagtactgattcgtatggaattagcacgacccggcgat caaattcttggtgggaatcatcaactttataatgttttaataacggctca cgcttttttaatgatcttttttatggttatgccggcgatgataggtggat ttggtaattggtttgttccgattctgataggtgcacctgacatggcattt ccacgattaaataatatttcattctggttgttgccaccaagtctcttgct cctattaagctcagccttagtagaagtgggtagcgggactgggtggacgg tctatccgcccttaagtggtattaccagccattctggaggagctgttgat ttagcaatttctagtcttcatctatctggtgtttcatccattttaggttc tatcaattttataacaactatcttcaacatgcgtggacctggaatgacta tgcatagattacccctatttgtgtggtccgttctagtgacagcattccta cttttattatcacttcccgtactggcaggggcaattaccatgttattaac cgatcgaaactttaatacaaccttttttgatcccgctggggggggagacc ccata
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Coding sequence (CDS) from alignment at EU701210:1..655+

>EU701210.1-COX1.m1 ID=EU701210.1-COX1.m1|Name=COX1|organism=Rubus occidentalis|type=CDS|length=655bp|location=Sequence derived from alignment at EU701210:1..655+ (Rubus occidentalis)
ggatatagggactctatatttcatcttcggtgctattgctggagtgatgg
gcacatgcttctcagtactgattcgtatggaattagcacgacccggcgat
caaattcttggtgggaatcatcaactttataatgttttaataacggctca
cgcttttttaatgatcttttttatggttatgccggcgatgataggtggat
ttggtaattggtttgttccgattctgataggtgcacctgacatggcattt
ccacgattaaataatatttcattctggttgttgccaccaagtctcttgct
cctattaagctcagccttagtagaagtgggtagcgggactgggtggacgg
tctatccgcccttaagtggtattaccagccattctggaggagctgttgat
ttagcaatttctagtcttcatctatctggtgtttcatccattttaggttc
tatcaattttataacaactatcttcaacatgcgtggacctggaatgacta
tgcatagattacccctatttgtgtggtccgttctagtgacagcattccta
cttttattatcacttcccgtactggcaggggcaattaccatgttattaac
cgatcgaaactttaatacaaccttttttgatcccgctggggggggagacc
ccata
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