COX1, EU701205.1-COX1.m1 (mRNA) Rubus idaeus subsp. strigosus

Transcript Overview
NameCOX1
Unique NameEU701205.1-COX1.m1
TypemRNA
OrganismRubus idaeus subsp. strigosus ()
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
COX1EU701205.1-COX1Rubus idaeus subsp. strigosusgene


This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
COX1COX1Rubus idaeus subsp. strigosusgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EU701205.1-COX1.m1-cds1EU701205.1-COX1.m1-cds1Rubus idaeus subsp. strigosusCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
COX1EU701205.1-COX1.p1Rubus idaeus subsp. strigosuspolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI187962331
nuccoreEU701205.1
Alignments
Feature NameTypeLocationAnalysis
EU701205 region EU701205:1..655+ NCBI Rosaceae gene and mRNA sequences
Properties
Property NameValue
Productcytochrome oxidase subunit 1
Sourcegenbank
Sequences
The following sequences are available for this feature:

mRNA sequence

>EU701205.1-COX1.m1 ID=EU701205.1-COX1.m1|Name=COX1|organism=Rubus idaeus subsp. strigosus|type=mRNA|length=655bp
ggatatagggactctatatttcatcttcggtgctattgctggagtgatgg
gcacatgcttctcagtactgattcgtatggaattagcacgacccggcgat
caaattcttggtgggaatcatcaactttataatgttttaataacggctca
cgcttttttaatgatcttttttatggttatgccggcgatgataggtggat
ttggtaattggtttgttccgattctgataggtgcacctgacatggcattt
ccacgattaaataatatttcattctggttgttgccaccaagtctcttgct
cctattaagctcagccttagtagaagtgggtagcgggactgggtggacgg
tctatccgcccttaagtggtattaccagccattctggaggagctgttgat
ttagcaatttctagtcttcatctatctggtgtttcatccattttaggttc
tatcaattttataacaactatcttcaacatgcgtggacctggaatgacta
tgcatagattacccctatttgtgtggtccgttctagtgacagcattccta
cttttattatcacttcccgtactggcaggggcaattaccatgttattaac
cgatcgaaactttaatacaaccttttttgatcccgctggggggggagacc
ccata
back to top

protein sequence of COX1

>EU701205.1-COX1.p1 ID=EU701205.1-COX1.p1|Name=COX1|organism=Rubus idaeus subsp. strigosus|type=polypeptide|length=218bp
DIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAH
AFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLL
LLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAISSLHLSGVSSILGS
INFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLT
DRNFNTTFFDPAGGGDPI
back to top

mRNA from alignment at EU701205:1..655+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EU701205.1-COX1.m1 ID=EU701205.1-COX1.m1|Name=COX1|organism=Rubus idaeus subsp. strigosus|type=mRNA|length=655bp|location=Sequence derived from alignment at EU701205:1..655+ (Rubus idaeus subsp. strigosus)
ggatatagggactctatatttcatcttcggtgctattgctggagtgatgg gcacatgcttctcagtactgattcgtatggaattagcacgacccggcgat caaattcttggtgggaatcatcaactttataatgttttaataacggctca cgcttttttaatgatcttttttatggttatgccggcgatgataggtggat ttggtaattggtttgttccgattctgataggtgcacctgacatggcattt ccacgattaaataatatttcattctggttgttgccaccaagtctcttgct cctattaagctcagccttagtagaagtgggtagcgggactgggtggacgg tctatccgcccttaagtggtattaccagccattctggaggagctgttgat ttagcaatttctagtcttcatctatctggtgtttcatccattttaggttc tatcaattttataacaactatcttcaacatgcgtggacctggaatgacta tgcatagattacccctatttgtgtggtccgttctagtgacagcattccta cttttattatcacttcccgtactggcaggggcaattaccatgttattaac cgatcgaaactttaatacaaccttttttgatcccgctggggggggagacc ccata
back to top

Coding sequence (CDS) from alignment at EU701205:1..655+

>EU701205.1-COX1.m1 ID=EU701205.1-COX1.m1|Name=COX1|organism=Rubus idaeus subsp. strigosus|type=CDS|length=655bp|location=Sequence derived from alignment at EU701205:1..655+ (Rubus idaeus subsp. strigosus)
ggatatagggactctatatttcatcttcggtgctattgctggagtgatgg
gcacatgcttctcagtactgattcgtatggaattagcacgacccggcgat
caaattcttggtgggaatcatcaactttataatgttttaataacggctca
cgcttttttaatgatcttttttatggttatgccggcgatgataggtggat
ttggtaattggtttgttccgattctgataggtgcacctgacatggcattt
ccacgattaaataatatttcattctggttgttgccaccaagtctcttgct
cctattaagctcagccttagtagaagtgggtagcgggactgggtggacgg
tctatccgcccttaagtggtattaccagccattctggaggagctgttgat
ttagcaatttctagtcttcatctatctggtgtttcatccattttaggttc
tatcaattttataacaactatcttcaacatgcgtggacctggaatgacta
tgcatagattacccctatttgtgtggtccgttctagtgacagcattccta
cttttattatcacttcccgtactggcaggggcaattaccatgttattaac
cgatcgaaactttaatacaaccttttttgatcccgctggggggggagacc
ccata
back to top