C4H, HQ901370.1-C4H.m1 (mRNA) Pyrus x bretschneideri

Transcript Overview
NameC4H
Unique NameHQ901370.1-C4H.m1
TypemRNA
OrganismPyrus x bretschneideri ()
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
C4HC4HPyrus x bretschneiderigene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
HQ901370.1-C4H.m1-cds1HQ901370.1-C4H.m1-cds1Pyrus x bretschneideriCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
C4HHQ901370.1-C4H.p1Pyrus x bretschneideripolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI341833962
nuccoreHQ901370.1
Alignments
Feature NameTypeLocationAnalysis
HQ901370 region HQ901370:85..1599+ NCBI Rosaceae gene and mRNA sequences
scaffold00442 supercontig scaffold00442:28348..32677+ Pyrus communis Genome v1.0 Draft Assembly & Annotation
Properties
Property NameValue
Productcinnamic acid 4-hydroxylase-like protein
Sourcegenbank
Genbank notesimilar to INSD ABD77493.2 cinnamic acid 4-hydroxylase [Arnebia euchroma]
Sequences
The following sequences are available for this feature:

mRNA sequence

>HQ901370.1-C4H.m1 ID=HQ901370.1-C4H.m1|Name=C4H|organism=Pyrus x bretschneideri|type=mRNA|length=1515bp
atggacctcctcttcctggaaaagacccttctgggtctcttcgtcgcggt
catcgttgccatcaccatttcaaaactccgcggcaagaaattcaggctcc
cgccgggtcccatccccgtacccgtattcggaaactggctccaggtcggt
gacggcctcaaccaccgcaatctcaccgacatggccaagaaattcggcga
ctgcttcctcctccgcatggggcagcgcaacctcgtcgtcgtctcctcgc
cggagctcgccaaggaggtcctccacactcagggagtcgaattcgggtcg
aggacccgaaacgtcgtctttgatattttcaccggtgaaggccaggacat
ggtgttcaccgtctacggcgagcactggcggaaaatgcggcgtatcatga
ccgtccccttcttcaccaacaaggtcgtccagcagtaccgctacggatgg
gagtcggaggcggcggcggtcgtcgaggatgtgaaaaagcaccccgaggc
ggcgaccagcggaatggtgctgcggaggcggctgcagctgatgatgtaca
acaacatgtacagaatcatgttcgaccggcgattcgagagcgaggaggat
cccctgttcgtgaagctcaaggcgctgaatggggagaggaaccgattggc
gcagagcttcgactacaactacggtgattttatcccgatcttaaggccct
ttttgagagggtatttgaagatctgcaaggaagtggaggagaagaggatc
cagctgtttaaggactatttcgtggacgagaggaagaaactttcgagcac
aaagcctacaacaaacgaagggttgaaatgcgccatcgaccacatcctcg
acgcgcagcagaaaggagaaatcaacgaggacaacgttctctacatcgtc
gagaacatcaacgttgctgctattgaaaccacattgtggtcgatcgagtg
gggaattgccgagctagtgaaccatcccgaaatccagaagaagctgagga
atgaactcgacacagtccttggccgcggagttcagatcacagagcccgac
gttcataaacttccctacctgcaagccgtggtcaaggagactctccgact
tcgcatggcaatcccactccttgtcccccacatgaacctccaggatgcca
agctcggtgggtttgatattccggcggagagcaagatactggtgaatgct
tggtggttggcaaacaaccctgccctgtggaagaagccagaagagtttag
gcccgagaggtttttggaggaggagtcgaaggtggaggctaacgggaacg
acttcaggtatctcccgtttggtgttgggaggagaagttgtcctgggatt
attttggccctgccaatcctgggcattacaattggacgtttagtccagaa
cttcgagcttctgcctccgccgggacagtccaagctcgacacctcggaga
aaggtgggcagttcagcctgcacatcctgaagcattccaccattgtgatg
aagtcgagggcgtag
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protein sequence of C4H

>HQ901370.1-C4H.p1 ID=HQ901370.1-C4H.p1|Name=C4H|organism=Pyrus x bretschneideri|type=polypeptide|length=504bp
MDLLFLEKTLLGLFVAVIVAITISKLRGKKFRLPPGPIPVPVFGNWLQVG
DGLNHRNLTDMAKKFGDCFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGS
RTRNVVFDIFTGEGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGW
ESEAAAVVEDVKKHPEAATSGMVLRRRLQLMMYNNMYRIMFDRRFESEED
PLFVKLKALNGERNRLAQSFDYNYGDFIPILRPFLRGYLKICKEVEEKRI
QLFKDYFVDERKKLSSTKPTTNEGLKCAIDHILDAQQKGEINEDNVLYIV
ENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGRGVQITEPD
VHKLPYLQAVVKETLRLRMAIPLLVPHMNLQDAKLGGFDIPAESKILVNA
WWLANNPALWKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGI
ILALPILGITIGRLVQNFELLPPPGQSKLDTSEKGGQFSLHILKHSTIVM
KSRA
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mRNA from alignment at HQ901370:85..1599+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>HQ901370.1-C4H.m1 ID=HQ901370.1-C4H.m1|Name=C4H|organism=Pyrus x bretschneideri|type=mRNA|length=1515bp|location=Sequence derived from alignment at HQ901370:85..1599+ (Pyrus x bretschneideri)
atggacctcctcttcctggaaaagacccttctgggtctcttcgtcgcggt catcgttgccatcaccatttcaaaactccgcggcaagaaattcaggctcc cgccgggtcccatccccgtacccgtattcggaaactggctccaggtcggt gacggcctcaaccaccgcaatctcaccgacatggccaagaaattcggcga ctgcttcctcctccgcatggggcagcgcaacctcgtcgtcgtctcctcgc cggagctcgccaaggaggtcctccacactcagggagtcgaattcgggtcg aggacccgaaacgtcgtctttgatattttcaccggtgaaggccaggacat ggtgttcaccgtctacggcgagcactggcggaaaatgcggcgtatcatga ccgtccccttcttcaccaacaaggtcgtccagcagtaccgctacggatgg gagtcggaggcggcggcggtcgtcgaggatgtgaaaaagcaccccgaggc ggcgaccagcggaatggtgctgcggaggcggctgcagctgatgatgtaca acaacatgtacagaatcatgttcgaccggcgattcgagagcgaggaggat cccctgttcgtgaagctcaaggcgctgaatggggagaggaaccgattggc gcagagcttcgactacaactacggtgattttatcccgatcttaaggccct ttttgagagggtatttgaagatctgcaaggaagtggaggagaagaggatc cagctgtttaaggactatttcgtggacgagaggaagaaactttcgagcac aaagcctacaacaaacgaagggttgaaatgcgccatcgaccacatcctcg acgcgcagcagaaaggagaaatcaacgaggacaacgttctctacatcgtc gagaacatcaacgttgctgctattgaaaccacattgtggtcgatcgagtg gggaattgccgagctagtgaaccatcccgaaatccagaagaagctgagga atgaactcgacacagtccttggccgcggagttcagatcacagagcccgac gttcataaacttccctacctgcaagccgtggtcaaggagactctccgact tcgcatggcaatcccactccttgtcccccacatgaacctccaggatgcca agctcggtgggtttgatattccggcggagagcaagatactggtgaatgct tggtggttggcaaacaaccctgccctgtggaagaagccagaagagtttag gcccgagaggtttttggaggaggagtcgaaggtggaggctaacgggaacg acttcaggtatctcccgtttggtgttgggaggagaagttgtcctgggatt attttggccctgccaatcctgggcattacaattggacgtttagtccagaa cttcgagcttctgcctccgccgggacagtccaagctcgacacctcggaga aaggtgggcagttcagcctgcacatcctgaagcattccaccattgtgatg aagtcgagggcgtag
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Coding sequence (CDS) from alignment at HQ901370:85..1599+

>HQ901370.1-C4H.m1 ID=HQ901370.1-C4H.m1|Name=C4H|organism=Pyrus x bretschneideri|type=CDS|length=1515bp|location=Sequence derived from alignment at HQ901370:85..1599+ (Pyrus x bretschneideri)
atggacctcctcttcctggaaaagacccttctgggtctcttcgtcgcggt
catcgttgccatcaccatttcaaaactccgcggcaagaaattcaggctcc
cgccgggtcccatccccgtacccgtattcggaaactggctccaggtcggt
gacggcctcaaccaccgcaatctcaccgacatggccaagaaattcggcga
ctgcttcctcctccgcatggggcagcgcaacctcgtcgtcgtctcctcgc
cggagctcgccaaggaggtcctccacactcagggagtcgaattcgggtcg
aggacccgaaacgtcgtctttgatattttcaccggtgaaggccaggacat
ggtgttcaccgtctacggcgagcactggcggaaaatgcggcgtatcatga
ccgtccccttcttcaccaacaaggtcgtccagcagtaccgctacggatgg
gagtcggaggcggcggcggtcgtcgaggatgtgaaaaagcaccccgaggc
ggcgaccagcggaatggtgctgcggaggcggctgcagctgatgatgtaca
acaacatgtacagaatcatgttcgaccggcgattcgagagcgaggaggat
cccctgttcgtgaagctcaaggcgctgaatggggagaggaaccgattggc
gcagagcttcgactacaactacggtgattttatcccgatcttaaggccct
ttttgagagggtatttgaagatctgcaaggaagtggaggagaagaggatc
cagctgtttaaggactatttcgtggacgagaggaagaaactttcgagcac
aaagcctacaacaaacgaagggttgaaatgcgccatcgaccacatcctcg
acgcgcagcagaaaggagaaatcaacgaggacaacgttctctacatcgtc
gagaacatcaacgttgctgctattgaaaccacattgtggtcgatcgagtg
gggaattgccgagctagtgaaccatcccgaaatccagaagaagctgagga
atgaactcgacacagtccttggccgcggagttcagatcacagagcccgac
gttcataaacttccctacctgcaagccgtggtcaaggagactctccgact
tcgcatggcaatcccactccttgtcccccacatgaacctccaggatgcca
agctcggtgggtttgatattccggcggagagcaagatactggtgaatgct
tggtggttggcaaacaaccctgccctgtggaagaagccagaagagtttag
gcccgagaggtttttggaggaggagtcgaaggtggaggctaacgggaacg
acttcaggtatctcccgtttggtgttgggaggagaagttgtcctgggatt
attttggccctgccaatcctgggcattacaattggacgtttagtccagaa
cttcgagcttctgcctccgccgggacagtccaagctcgacacctcggaga
aaggtgggcagttcagcctgcacatcctgaagcattccaccattgtgatg
aagtcgagggcgtag
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