IPT3A, HQ585947.1-IPT3A.m1 (mRNA) Malus x domestica

Transcript Overview
NameIPT3A
Unique NameHQ585947.1-IPT3A.m1
TypemRNA
OrganismMalus x domestica (Apple)
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
IPT3AIPT3AMalus x domesticagene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
HQ585947.1-IPT3A.m1-cds1HQ585947.1-IPT3A.m1-cds1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
IPT3AHQ585947.1-IPT3A.p1Malus x domesticapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI325112793
nuccoreHQ585947.1
Alignments
Feature NameTypeLocationAnalysis
HQ585947 region HQ585947:1..963+ NCBI Rosaceae gene and mRNA sequences
Chr03 chromosome Chr03:35283549..35284511+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr3 chromosome chr3:31482982..31483944- Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr3 chromosome chr3:37001355..37002317+ Malus x domestica Whole Genome v1.0p Assembly & Annotation
Properties
Property NameValue
Productadenylate isopentenyltransferase
Sourcegenbank
Genbank notecytokinin biosynthesis enzyme
Sequences
The following sequences are available for this feature:

mRNA sequence

>HQ585947.1-IPT3A.m1 ID=HQ585947.1-IPT3A.m1|Name=IPT3A|organism=Malus x domestica|type=mRNA|length=963bp
atgatgccaatgtgcaaacaaatacaaacattactacatgttccatctag
tggccataatcataaaatggacgtgttcaatcctcaccggcagaaggaga
aggtggtgatcgtaatgggagcaacagggaccggaaagtcaaggctctcc
atcgacctagccacctgtttcccggcagaaatcataaactccgacaaaat
gcaagtctacgaaggccttgacatagtcaccaacaaaataaccaaagaag
agcaacgtggtgtaccgcaccatttgctagggatgctagatcctcatgaa
gattttactgccagggatttttgtgacctaacctcaattgccattgaatc
cattttaggccgtgatcggcttccaatcatcgttggaggttccaactctt
acatcgaggcgttgatcgatgattatgactataaatttcggtccaagtat
gactgttgctttttatgggtagatgtgtctacacccgttctgcactcttt
tgtgtcaaaacgggtagaccacatggttcaaaacggaatggtggatgagg
cgagagagtactttgatcccaatgcagattacacgaaagggattcgaaga
gcaataggggtccctgaattcgataagtacttcaggtatgggccattttt
ggaagaagaaactcgtgctcggttactacgacaagcagtggacgaaatta
aggacaatacgtgcaaattggcatgtcgacaactggagaagattcataga
cttagaaatatcaaagggtggaatctgcacccgttggatgccacggaggt
gttccgaaagcgcggcgaagaggccgacgaggcctggaaaaagcttgtgt
cggggacaagtgctatgatcgttggccagtttctttacaatatgacagct
gaggttcctccacatcttggaagccttagggttcttgaagcacttgcagc
tgcaactcactag
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protein sequence of IPT3A

>HQ585947.1-IPT3A.p1 ID=HQ585947.1-IPT3A.p1|Name=IPT3A|organism=Malus x domestica|type=polypeptide|length=320bp
MMPMCKQIQTLLHVPSSGHNHKMDVFNPHRQKEKVVIVMGATGTGKSRLS
IDLATCFPAEIINSDKMQVYEGLDIVTNKITKEEQRGVPHHLLGMLDPHE
DFTARDFCDLTSIAIESILGRDRLPIIVGGSNSYIEALIDDYDYKFRSKY
DCCFLWVDVSTPVLHSFVSKRVDHMVQNGMVDEAREYFDPNADYTKGIRR
AIGVPEFDKYFRYGPFLEEETRARLLRQAVDEIKDNTCKLACRQLEKIHR
LRNIKGWNLHPLDATEVFRKRGEEADEAWKKLVSGTSAMIVGQFLYNMTA
EVPPHLGSLRVLEALAAATH
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mRNA from alignment at HQ585947:1..963+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>HQ585947.1-IPT3A.m1 ID=HQ585947.1-IPT3A.m1|Name=IPT3A|organism=Malus x domestica|type=mRNA|length=963bp|location=Sequence derived from alignment at HQ585947:1..963+ (Malus x domestica)
atgatgccaatgtgcaaacaaatacaaacattactacatgttccatctag tggccataatcataaaatggacgtgttcaatcctcaccggcagaaggaga aggtggtgatcgtaatgggagcaacagggaccggaaagtcaaggctctcc atcgacctagccacctgtttcccggcagaaatcataaactccgacaaaat gcaagtctacgaaggccttgacatagtcaccaacaaaataaccaaagaag agcaacgtggtgtaccgcaccatttgctagggatgctagatcctcatgaa gattttactgccagggatttttgtgacctaacctcaattgccattgaatc cattttaggccgtgatcggcttccaatcatcgttggaggttccaactctt acatcgaggcgttgatcgatgattatgactataaatttcggtccaagtat gactgttgctttttatgggtagatgtgtctacacccgttctgcactcttt tgtgtcaaaacgggtagaccacatggttcaaaacggaatggtggatgagg cgagagagtactttgatcccaatgcagattacacgaaagggattcgaaga gcaataggggtccctgaattcgataagtacttcaggtatgggccattttt ggaagaagaaactcgtgctcggttactacgacaagcagtggacgaaatta aggacaatacgtgcaaattggcatgtcgacaactggagaagattcataga cttagaaatatcaaagggtggaatctgcacccgttggatgccacggaggt gttccgaaagcgcggcgaagaggccgacgaggcctggaaaaagcttgtgt cggggacaagtgctatgatcgttggccagtttctttacaatatgacagct gaggttcctccacatcttggaagccttagggttcttgaagcacttgcagc tgcaactcactag
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Coding sequence (CDS) from alignment at HQ585947:1..963+

>HQ585947.1-IPT3A.m1 ID=HQ585947.1-IPT3A.m1|Name=IPT3A|organism=Malus x domestica|type=CDS|length=963bp|location=Sequence derived from alignment at HQ585947:1..963+ (Malus x domestica)
atgatgccaatgtgcaaacaaatacaaacattactacatgttccatctag
tggccataatcataaaatggacgtgttcaatcctcaccggcagaaggaga
aggtggtgatcgtaatgggagcaacagggaccggaaagtcaaggctctcc
atcgacctagccacctgtttcccggcagaaatcataaactccgacaaaat
gcaagtctacgaaggccttgacatagtcaccaacaaaataaccaaagaag
agcaacgtggtgtaccgcaccatttgctagggatgctagatcctcatgaa
gattttactgccagggatttttgtgacctaacctcaattgccattgaatc
cattttaggccgtgatcggcttccaatcatcgttggaggttccaactctt
acatcgaggcgttgatcgatgattatgactataaatttcggtccaagtat
gactgttgctttttatgggtagatgtgtctacacccgttctgcactcttt
tgtgtcaaaacgggtagaccacatggttcaaaacggaatggtggatgagg
cgagagagtactttgatcccaatgcagattacacgaaagggattcgaaga
gcaataggggtccctgaattcgataagtacttcaggtatgggccattttt
ggaagaagaaactcgtgctcggttactacgacaagcagtggacgaaatta
aggacaatacgtgcaaattggcatgtcgacaactggagaagattcataga
cttagaaatatcaaagggtggaatctgcacccgttggatgccacggaggt
gttccgaaagcgcggcgaagaggccgacgaggcctggaaaaagcttgtgt
cggggacaagtgctatgatcgttggccagtttctttacaatatgacagct
gaggttcctccacatcttggaagccttagggttcttgaagcacttgcagc
tgcaactcactag
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