CDPK, EF519915.1-CDPK.m1 (mRNA) Malus hupehensis

Transcript Overview
NameCDPK
Unique NameEF519915.1-CDPK.m1
TypemRNA
OrganismMalus hupehensis ()
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
CDPKCDPKMalus hupehensisgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EF519915.1-CDPK.m1-cds1EF519915.1-CDPK.m1-cds1Malus hupehensisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CDPKEF519915.1-CDPK.p1Malus hupehensispolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI154968281
nuccoreEF519915.1
Alignments
Feature NameTypeLocationAnalysis
EF519915 region EF519915:1..1701+ NCBI Rosaceae gene and mRNA sequences
Chr02 chromosome Chr02:30964904..30970801+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr2 chromosome chr2:29570514..29576411+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
Properties
Property NameValue
Productcalcium-dependent calmodulin-independent protein kinase
Sourcegenbank
Sequences
The following sequences are available for this feature:

mRNA sequence

>EF519915.1-CDPK.m1 ID=EF519915.1-CDPK.m1|Name=CDPK|organism=Malus hupehensis|type=mRNA|length=1701bp
atgggtaatacttgtgttggacctagcatttccaagaatggtttcttcca
atcagtttcagctgtaatgtggccaaaccggtcgcctgatgactcagttc
acacaaacggagaagctgtcgctgagacatcatcacctaaggaacctgag
tcacctatgccagtactagacaaaccaccagagcaagtgacaataccaaa
tccagaaaccgagccaaaacaatccgcaaaacccaagaagctaccacaga
tgaagagggtccctagtgcaggactcgctggttcggtgttgcaaacgaaa
actggaaagttaaaggagttttacagtttggggagaaaactaggacaagg
gcagtttggaattacgtttctgtgtgtggagaaggcgacagggaaagagt
atgcgtgcaaatcgattgcaaaaaggaagttaataactgatgaggatgtg
gaggatgtgaggagggaaattcagatcatgcaccatttggcagggcaccc
aaatgttatatctattaagggagcttatgaggatgctatagcagttcatg
ttgtaatggaattatgtgcaggaggtgagctgtttgataggattatccag
cgtgggcattatacagaaagaaaggcagctgagctaactaggactatagt
tggagttgtcgaagcttgccattcattgggagttatgcatcgagacctta
agccggagaattttctttttgtcagtcaggatgaggatgcactactgaaa
actattgattttggattatctattttcttgaagccaggagtaaaatttac
tgatgtggttggaagtccatattatgttgcacctgaagtgttacgcaagc
gttatggtccagaagcagatgtctggagtgcaggagtaatcctttacatt
ctgttaagtggggtacctccattttgggctgaaggtgagcacggaatatt
tgaacaggtcctgcatggtgacttagattttgaatcagacccttggccta
gtatttctgatggtgccaaagatttagtgaggagaatgcttgtccgagac
cctaaaaggcggctgacagcacatgaagttttgtgccacccctgggtgca
agttgatggtgtggctcccgataaggctcttgattctgcagttctaagtc
gcttaaaacaattttcagctatgaacaagctcaagaaaatggctctcaga
gtaattgcagagaggttgtctgaagaagaaatagctggcctgaaagaaat
gttcaagatgatagacactgacaacagtggtcaaatcacttttgacgaac
tcaaggccggattgaaaagatttggagcaactctggaggagtctgaaatt
tatgatctaatgcaagcagcagatgtcgataacagtggaaccattgatta
tggggagttcgtagctgcaacattgcatctgaacaaaattgagagagaag
atcatctattttcagctttctcctactttgataaggatggaagtggctat
attacttcagatgagcttcaagtagcttgtgaggagtttggcatagagga
tgttcggctcgaagagatgataagagaagttgatcaggacaatgatggac
gcatagattacaacgagtttgtagccatgatgcagaaaggaaattttgtt
ggcccgggtaagaagggattgcaaagtagcttcagcattgcctttagata
a
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protein sequence of CDPK

>EF519915.1-CDPK.p1 ID=EF519915.1-CDPK.p1|Name=CDPK|organism=Malus hupehensis|type=polypeptide|length=566bp
MGNTCVGPSISKNGFFQSVSAVMWPNRSPDDSVHTNGEAVAETSSPKEPE
SPMPVLDKPPEQVTIPNPETEPKQSAKPKKLPQMKRVPSAGLAGSVLQTK
TGKLKEFYSLGRKLGQGQFGITFLCVEKATGKEYACKSIAKRKLITDEDV
EDVRREIQIMHHLAGHPNVISIKGAYEDAIAVHVVMELCAGGELFDRIIQ
RGHYTERKAAELTRTIVGVVEACHSLGVMHRDLKPENFLFVSQDEDALLK
TIDFGLSIFLKPGVKFTDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYI
LLSGVPPFWAEGEHGIFEQVLHGDLDFESDPWPSISDGAKDLVRRMLVRD
PKRRLTAHEVLCHPWVQVDGVAPDKALDSAVLSRLKQFSAMNKLKKMALR
VIAERLSEEEIAGLKEMFKMIDTDNSGQITFDELKAGLKRFGATLEESEI
YDLMQAADVDNSGTIDYGEFVAATLHLNKIEREDHLFSAFSYFDKDGSGY
ITSDELQVACEEFGIEDVRLEEMIREVDQDNDGRIDYNEFVAMMQKGNFV
GPGKKGLQSSFSIAFR
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mRNA from alignment at EF519915:1..1701+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EF519915.1-CDPK.m1 ID=EF519915.1-CDPK.m1|Name=CDPK|organism=Malus hupehensis|type=mRNA|length=1701bp|location=Sequence derived from alignment at EF519915:1..1701+ (Malus hupehensis)
atgggtaatacttgtgttggacctagcatttccaagaatggtttcttcca atcagtttcagctgtaatgtggccaaaccggtcgcctgatgactcagttc acacaaacggagaagctgtcgctgagacatcatcacctaaggaacctgag tcacctatgccagtactagacaaaccaccagagcaagtgacaataccaaa tccagaaaccgagccaaaacaatccgcaaaacccaagaagctaccacaga tgaagagggtccctagtgcaggactcgctggttcggtgttgcaaacgaaa actggaaagttaaaggagttttacagtttggggagaaaactaggacaagg gcagtttggaattacgtttctgtgtgtggagaaggcgacagggaaagagt atgcgtgcaaatcgattgcaaaaaggaagttaataactgatgaggatgtg gaggatgtgaggagggaaattcagatcatgcaccatttggcagggcaccc aaatgttatatctattaagggagcttatgaggatgctatagcagttcatg ttgtaatggaattatgtgcaggaggtgagctgtttgataggattatccag cgtgggcattatacagaaagaaaggcagctgagctaactaggactatagt tggagttgtcgaagcttgccattcattgggagttatgcatcgagacctta agccggagaattttctttttgtcagtcaggatgaggatgcactactgaaa actattgattttggattatctattttcttgaagccaggagtaaaatttac tgatgtggttggaagtccatattatgttgcacctgaagtgttacgcaagc gttatggtccagaagcagatgtctggagtgcaggagtaatcctttacatt ctgttaagtggggtacctccattttgggctgaaggtgagcacggaatatt tgaacaggtcctgcatggtgacttagattttgaatcagacccttggccta gtatttctgatggtgccaaagatttagtgaggagaatgcttgtccgagac cctaaaaggcggctgacagcacatgaagttttgtgccacccctgggtgca agttgatggtgtggctcccgataaggctcttgattctgcagttctaagtc gcttaaaacaattttcagctatgaacaagctcaagaaaatggctctcaga gtaattgcagagaggttgtctgaagaagaaatagctggcctgaaagaaat gttcaagatgatagacactgacaacagtggtcaaatcacttttgacgaac tcaaggccggattgaaaagatttggagcaactctggaggagtctgaaatt tatgatctaatgcaagcagcagatgtcgataacagtggaaccattgatta tggggagttcgtagctgcaacattgcatctgaacaaaattgagagagaag atcatctattttcagctttctcctactttgataaggatggaagtggctat attacttcagatgagcttcaagtagcttgtgaggagtttggcatagagga tgttcggctcgaagagatgataagagaagttgatcaggacaatgatggac gcatagattacaacgagtttgtagccatgatgcagaaaggaaattttgtt ggcccgggtaagaagggattgcaaagtagcttcagcattgcctttagata a
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Coding sequence (CDS) from alignment at EF519915:1..1701+

>EF519915.1-CDPK.m1 ID=EF519915.1-CDPK.m1|Name=CDPK|organism=Malus hupehensis|type=CDS|length=1701bp|location=Sequence derived from alignment at EF519915:1..1701+ (Malus hupehensis)
atgggtaatacttgtgttggacctagcatttccaagaatggtttcttcca
atcagtttcagctgtaatgtggccaaaccggtcgcctgatgactcagttc
acacaaacggagaagctgtcgctgagacatcatcacctaaggaacctgag
tcacctatgccagtactagacaaaccaccagagcaagtgacaataccaaa
tccagaaaccgagccaaaacaatccgcaaaacccaagaagctaccacaga
tgaagagggtccctagtgcaggactcgctggttcggtgttgcaaacgaaa
actggaaagttaaaggagttttacagtttggggagaaaactaggacaagg
gcagtttggaattacgtttctgtgtgtggagaaggcgacagggaaagagt
atgcgtgcaaatcgattgcaaaaaggaagttaataactgatgaggatgtg
gaggatgtgaggagggaaattcagatcatgcaccatttggcagggcaccc
aaatgttatatctattaagggagcttatgaggatgctatagcagttcatg
ttgtaatggaattatgtgcaggaggtgagctgtttgataggattatccag
cgtgggcattatacagaaagaaaggcagctgagctaactaggactatagt
tggagttgtcgaagcttgccattcattgggagttatgcatcgagacctta
agccggagaattttctttttgtcagtcaggatgaggatgcactactgaaa
actattgattttggattatctattttcttgaagccaggagtaaaatttac
tgatgtggttggaagtccatattatgttgcacctgaagtgttacgcaagc
gttatggtccagaagcagatgtctggagtgcaggagtaatcctttacatt
ctgttaagtggggtacctccattttgggctgaaggtgagcacggaatatt
tgaacaggtcctgcatggtgacttagattttgaatcagacccttggccta
gtatttctgatggtgccaaagatttagtgaggagaatgcttgtccgagac
cctaaaaggcggctgacagcacatgaagttttgtgccacccctgggtgca
agttgatggtgtggctcccgataaggctcttgattctgcagttctaagtc
gcttaaaacaattttcagctatgaacaagctcaagaaaatggctctcaga
gtaattgcagagaggttgtctgaagaagaaatagctggcctgaaagaaat
gttcaagatgatagacactgacaacagtggtcaaatcacttttgacgaac
tcaaggccggattgaaaagatttggagcaactctggaggagtctgaaatt
tatgatctaatgcaagcagcagatgtcgataacagtggaaccattgatta
tggggagttcgtagctgcaacattgcatctgaacaaaattgagagagaag
atcatctattttcagctttctcctactttgataaggatggaagtggctat
attacttcagatgagcttcaagtagcttgtgaggagtttggcatagagga
tgttcggctcgaagagatgataagagaagttgatcaggacaatgatggac
gcatagattacaacgagtttgtagccatgatgcagaaaggaaattttgtt
ggcccgggtaagaagggattgcaaagtagcttcagcattgcctttagata
a
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