HSF8, HM122596.1-HSF8.m1 (mRNA) Malus x domestica

Transcript Overview
NameHSF8
Unique NameHM122596.1-HSF8.m1
TypemRNA
OrganismMalus x domestica (Apple)
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
HSF8HSF8Malus x domesticagene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
HM122596.1-HSF8.m1-cds1HM122596.1-HSF8.m1-cds1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
HSF8HM122596.1-HSF8.p1Malus x domesticapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI302398881
nuccoreHM122596.1
Alignments
Feature NameTypeLocationAnalysis
HM122596 region HM122596:186..1337+ NCBI Rosaceae gene and mRNA sequences
Chr15 chromosome Chr15:5510688..5511956- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr15 chromosome chr15:2337891..2339159- Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr15 chromosome chr15:2337892..2339160- Malus x domestica Whole Genome v1.0p Assembly & Annotation
Properties
Property NameValue
ProductHSF domain class transcription factor
Sourcegenbank
Sequences
The following sequences are available for this feature:

mRNA sequence

>HM122596.1-HSF8.m1 ID=HM122596.1-HSF8.m1|Name=HSF8|organism=Malus x domestica|type=mRNA|length=1152bp
atggcgttgatgatagacaactgcgagggcatactgctctctctggactc
ccacaagtcggtcccggcgccgttcctgaccaaaacctaccagctcgtcg
acgaccccgccaccgaccacatcgtctcgtggggcgacgacgacaccacc
ttcgtcgtctggcgccctcccgagttcgcccgcgacctcctccccaacta
cttcaagcacaacaacttctcaagcttcgtccgccagctcaacacctatg
gttttaggaagattgtaccggacagatgggagtttgcgaacgagttcttc
aaaaagggagagaagcatttgctttgcgagatccaccggagaaaaacagc
tcagccacatcaggtgggtctcagccaccaccaccaccaccactcccaac
tcggcatgaacggccaccaccaccatcctggctttttccccttcccaagt
cccggcagcatctcgccctccgactcggacgagcagcccaactggtgcga
ttcggactcccctcctctcttatccccaacgggaggtattaacacaaaca
ttaactctaacaacaataatttcatgaatattaacaataataataccacg
gtggcgggtttggcggaggacaacgagaggctgcggaggagcaacaccat
gctaatgtctgagctggcacatatgagaaaactctacaacgacatcatct
actttgttcagaaccatgtcaagccggtggctccgagcaactcataccct
tcttccatgcttctctgcaacccacagcctcctaaacataatggtcctaa
tagtaatttgaaccaacttctagggtactatccggctgctcctccaccta
atgccaaacaaaaccctcatcatatcatgaactcttccagtccgatgagc
aacaccacgtcgaagagctcctccgtcactattctcgaagaccatcacca
gcagcctccgagcggtaacaatgggtgcaagaacactaagctttttgggg
tgccgctgcttcattcgaagaaacgattgcacccggaggagtacggctcg
aataatcaccatgggaacaacatgatggaggccagcaaggctcgtttgat
tttggagaaggatgatttaggactccacctcatgcctccatccagatgtt
ag
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protein sequence of HSF8

>HM122596.1-HSF8.p1 ID=HM122596.1-HSF8.p1|Name=HSF8|organism=Malus x domestica|type=polypeptide|length=383bp
MALMIDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGDDDTT
FVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFF
KKGEKHLLCEIHRRKTAQPHQVGLSHHHHHHSQLGMNGHHHHPGFFPFPS
PGSISPSDSDEQPNWCDSDSPPLLSPTGGINTNINSNNNNFMNINNNNTT
VAGLAEDNERLRRSNTMLMSELAHMRKLYNDIIYFVQNHVKPVAPSNSYP
SSMLLCNPQPPKHNGPNSNLNQLLGYYPAAPPPNAKQNPHHIMNSSSPMS
NTTSKSSSVTILEDHHQQPPSGNNGCKNTKLFGVPLLHSKKRLHPEEYGS
NNHHGNNMMEASKARLILEKDDLGLHLMPPSRC
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mRNA from alignment at HM122596:186..1337+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>HM122596.1-HSF8.m1 ID=HM122596.1-HSF8.m1|Name=HSF8|organism=Malus x domestica|type=mRNA|length=1152bp|location=Sequence derived from alignment at HM122596:186..1337+ (Malus x domestica)
atggcgttgatgatagacaactgcgagggcatactgctctctctggactc ccacaagtcggtcccggcgccgttcctgaccaaaacctaccagctcgtcg acgaccccgccaccgaccacatcgtctcgtggggcgacgacgacaccacc ttcgtcgtctggcgccctcccgagttcgcccgcgacctcctccccaacta cttcaagcacaacaacttctcaagcttcgtccgccagctcaacacctatg gttttaggaagattgtaccggacagatgggagtttgcgaacgagttcttc aaaaagggagagaagcatttgctttgcgagatccaccggagaaaaacagc tcagccacatcaggtgggtctcagccaccaccaccaccaccactcccaac tcggcatgaacggccaccaccaccatcctggctttttccccttcccaagt cccggcagcatctcgccctccgactcggacgagcagcccaactggtgcga ttcggactcccctcctctcttatccccaacgggaggtattaacacaaaca ttaactctaacaacaataatttcatgaatattaacaataataataccacg gtggcgggtttggcggaggacaacgagaggctgcggaggagcaacaccat gctaatgtctgagctggcacatatgagaaaactctacaacgacatcatct actttgttcagaaccatgtcaagccggtggctccgagcaactcataccct tcttccatgcttctctgcaacccacagcctcctaaacataatggtcctaa tagtaatttgaaccaacttctagggtactatccggctgctcctccaccta atgccaaacaaaaccctcatcatatcatgaactcttccagtccgatgagc aacaccacgtcgaagagctcctccgtcactattctcgaagaccatcacca gcagcctccgagcggtaacaatgggtgcaagaacactaagctttttgggg tgccgctgcttcattcgaagaaacgattgcacccggaggagtacggctcg aataatcaccatgggaacaacatgatggaggccagcaaggctcgtttgat tttggagaaggatgatttaggactccacctcatgcctccatccagatgtt ag
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Coding sequence (CDS) from alignment at HM122596:186..1337+

>HM122596.1-HSF8.m1 ID=HM122596.1-HSF8.m1|Name=HSF8|organism=Malus x domestica|type=CDS|length=1152bp|location=Sequence derived from alignment at HM122596:186..1337+ (Malus x domestica)
atggcgttgatgatagacaactgcgagggcatactgctctctctggactc
ccacaagtcggtcccggcgccgttcctgaccaaaacctaccagctcgtcg
acgaccccgccaccgaccacatcgtctcgtggggcgacgacgacaccacc
ttcgtcgtctggcgccctcccgagttcgcccgcgacctcctccccaacta
cttcaagcacaacaacttctcaagcttcgtccgccagctcaacacctatg
gttttaggaagattgtaccggacagatgggagtttgcgaacgagttcttc
aaaaagggagagaagcatttgctttgcgagatccaccggagaaaaacagc
tcagccacatcaggtgggtctcagccaccaccaccaccaccactcccaac
tcggcatgaacggccaccaccaccatcctggctttttccccttcccaagt
cccggcagcatctcgccctccgactcggacgagcagcccaactggtgcga
ttcggactcccctcctctcttatccccaacgggaggtattaacacaaaca
ttaactctaacaacaataatttcatgaatattaacaataataataccacg
gtggcgggtttggcggaggacaacgagaggctgcggaggagcaacaccat
gctaatgtctgagctggcacatatgagaaaactctacaacgacatcatct
actttgttcagaaccatgtcaagccggtggctccgagcaactcataccct
tcttccatgcttctctgcaacccacagcctcctaaacataatggtcctaa
tagtaatttgaaccaacttctagggtactatccggctgctcctccaccta
atgccaaacaaaaccctcatcatatcatgaactcttccagtccgatgagc
aacaccacgtcgaagagctcctccgtcactattctcgaagaccatcacca
gcagcctccgagcggtaacaatgggtgcaagaacactaagctttttgggg
tgccgctgcttcattcgaagaaacgattgcacccggaggagtacggctcg
aataatcaccatgggaacaacatgatggaggccagcaaggctcgtttgat
tttggagaaggatgatttaggactccacctcatgcctccatccagatgtt
ag
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