HSF1, HM122589.1-HSF1.m1 (mRNA) Malus x domestica

Transcript Overview
NameHSF1
Unique NameHM122589.1-HSF1.m1
TypemRNA
OrganismMalus x domestica (Apple)
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
HSF1HSF1Malus x domesticagene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
HM122589.1-HSF1.m1-cds1HM122589.1-HSF1.m1-cds1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
HSF1HM122589.1-HSF1.p1Malus x domesticapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI302398867
nuccoreHM122589.1
Alignments
Feature NameTypeLocationAnalysis
HM122589 region HM122589:176..1420+ NCBI Rosaceae gene and mRNA sequences
Chr16 chromosome Chr16:1246392..1248406- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr10 chromosome chr10:1456139..1458153+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr10 chromosome chr10:1789383..1791397+ Malus x domestica Whole Genome v1.0p Assembly & Annotation
Properties
Property NameValue
ProductHSF domain class transcription factor
Sourcegenbank
Sequences
The following sequences are available for this feature:

mRNA sequence

>HM122589.1-HSF1.m1 ID=HM122589.1-HSF1.m1|Name=HSF1|organism=Malus x domestica|type=mRNA|length=1245bp
atggtgaaatcggcggagaagggcggaggagatgggtctgggccgtcggg
gtcggtgcctccttttctcagaaaatgctacgagatggtggatgacaagg
acagcgacagtataatctcgtggagtgaagccggcgacagctttgcgata
ctggacatggcccagttctcgatttcaatgctgcccaagtatttcaagca
cagcaacttttctagcttcatgaggcagctcaatatctatggatttagaa
aaatagatccagatcgttgggtgtttgcaaatgaaggatttattcgaggt
caaaagcatttgttgaagaatattgctagaaggaaacatccacagggcac
agatcaaaaaaagatattacagcaaaaagacaatcctgatataccgtctg
aaaatattagtgaaaatggtctgtggaaggaagttgagaacttgaagact
gataaagttgctctgaagcaagagttggtgaagcttaggcagcaccagga
aatttcacaaaataaattgctcctcctgaggaaccgccttcgcggaatgg
agaaaaatcaacagcagatgctgtcatttctagtgatggccatgcaaagt
cctggatttctagttcagcttcttcatccaaaggaaaatagttggcgaat
tgctgaagctggcaatataatagaacagtgtatggatgatgatagaccag
tggcttctgatggtgcgatagtgaggtaccaaccaccgatgattgaagcc
ccaaagcctttagtcccaccgaattcaggctcagagaaacaacctgaagt
tgatgcttatatggatggaatggaagattttgttgtaaatcctgatttca
tgaaaatgctaatggatgaaaagttgagccctgtagaaacccatgcccca
tatactctaccagatatatctgacgatggtgcatgggagcagtttctttt
agctagtcctttcttagaaaatattgaaggtacaaaggaagatggcgaag
agcctgctgatgctagaatggaggtggaaccaatagtatctgatctggat
gaatcacaaaattttgattatttagtcgagcaaatgaagaaatctcagaa
ctttgcatcggattcaacagttgatggatctaatatggagagctctcaaa
acttggagtttattactgaacaaatgggacatttggcttctgactctaac
aacatggaacagaatcagggaagcagaaggacaacttctgtgtaa
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protein sequence of HSF1

>HM122589.1-HSF1.p1 ID=HM122589.1-HSF1.p1|Name=HSF1|organism=Malus x domestica|type=polypeptide|length=414bp
MVKSAEKGGGDGSGPSGSVPPFLRKCYEMVDDKDSDSIISWSEAGDSFAI
LDMAQFSISMLPKYFKHSNFSSFMRQLNIYGFRKIDPDRWVFANEGFIRG
QKHLLKNIARRKHPQGTDQKKILQQKDNPDIPSENISENGLWKEVENLKT
DKVALKQELVKLRQHQEISQNKLLLLRNRLRGMEKNQQQMLSFLVMAMQS
PGFLVQLLHPKENSWRIAEAGNIIEQCMDDDRPVASDGAIVRYQPPMIEA
PKPLVPPNSGSEKQPEVDAYMDGMEDFVVNPDFMKMLMDEKLSPVETHAP
YTLPDISDDGAWEQFLLASPFLENIEGTKEDGEEPADARMEVEPIVSDLD
ESQNFDYLVEQMKKSQNFASDSTVDGSNMESSQNLEFITEQMGHLASDSN
NMEQNQGSRRTTSV
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mRNA from alignment at HM122589:176..1420+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>HM122589.1-HSF1.m1 ID=HM122589.1-HSF1.m1|Name=HSF1|organism=Malus x domestica|type=mRNA|length=1245bp|location=Sequence derived from alignment at HM122589:176..1420+ (Malus x domestica)
atggtgaaatcggcggagaagggcggaggagatgggtctgggccgtcggg gtcggtgcctccttttctcagaaaatgctacgagatggtggatgacaagg acagcgacagtataatctcgtggagtgaagccggcgacagctttgcgata ctggacatggcccagttctcgatttcaatgctgcccaagtatttcaagca cagcaacttttctagcttcatgaggcagctcaatatctatggatttagaa aaatagatccagatcgttgggtgtttgcaaatgaaggatttattcgaggt caaaagcatttgttgaagaatattgctagaaggaaacatccacagggcac agatcaaaaaaagatattacagcaaaaagacaatcctgatataccgtctg aaaatattagtgaaaatggtctgtggaaggaagttgagaacttgaagact gataaagttgctctgaagcaagagttggtgaagcttaggcagcaccagga aatttcacaaaataaattgctcctcctgaggaaccgccttcgcggaatgg agaaaaatcaacagcagatgctgtcatttctagtgatggccatgcaaagt cctggatttctagttcagcttcttcatccaaaggaaaatagttggcgaat tgctgaagctggcaatataatagaacagtgtatggatgatgatagaccag tggcttctgatggtgcgatagtgaggtaccaaccaccgatgattgaagcc ccaaagcctttagtcccaccgaattcaggctcagagaaacaacctgaagt tgatgcttatatggatggaatggaagattttgttgtaaatcctgatttca tgaaaatgctaatggatgaaaagttgagccctgtagaaacccatgcccca tatactctaccagatatatctgacgatggtgcatgggagcagtttctttt agctagtcctttcttagaaaatattgaaggtacaaaggaagatggcgaag agcctgctgatgctagaatggaggtggaaccaatagtatctgatctggat gaatcacaaaattttgattatttagtcgagcaaatgaagaaatctcagaa ctttgcatcggattcaacagttgatggatctaatatggagagctctcaaa acttggagtttattactgaacaaatgggacatttggcttctgactctaac aacatggaacagaatcagggaagcagaaggacaacttctgtgtaa
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Coding sequence (CDS) from alignment at HM122589:176..1420+

>HM122589.1-HSF1.m1 ID=HM122589.1-HSF1.m1|Name=HSF1|organism=Malus x domestica|type=CDS|length=1245bp|location=Sequence derived from alignment at HM122589:176..1420+ (Malus x domestica)
atggtgaaatcggcggagaagggcggaggagatgggtctgggccgtcggg
gtcggtgcctccttttctcagaaaatgctacgagatggtggatgacaagg
acagcgacagtataatctcgtggagtgaagccggcgacagctttgcgata
ctggacatggcccagttctcgatttcaatgctgcccaagtatttcaagca
cagcaacttttctagcttcatgaggcagctcaatatctatggatttagaa
aaatagatccagatcgttgggtgtttgcaaatgaaggatttattcgaggt
caaaagcatttgttgaagaatattgctagaaggaaacatccacagggcac
agatcaaaaaaagatattacagcaaaaagacaatcctgatataccgtctg
aaaatattagtgaaaatggtctgtggaaggaagttgagaacttgaagact
gataaagttgctctgaagcaagagttggtgaagcttaggcagcaccagga
aatttcacaaaataaattgctcctcctgaggaaccgccttcgcggaatgg
agaaaaatcaacagcagatgctgtcatttctagtgatggccatgcaaagt
cctggatttctagttcagcttcttcatccaaaggaaaatagttggcgaat
tgctgaagctggcaatataatagaacagtgtatggatgatgatagaccag
tggcttctgatggtgcgatagtgaggtaccaaccaccgatgattgaagcc
ccaaagcctttagtcccaccgaattcaggctcagagaaacaacctgaagt
tgatgcttatatggatggaatggaagattttgttgtaaatcctgatttca
tgaaaatgctaatggatgaaaagttgagccctgtagaaacccatgcccca
tatactctaccagatatatctgacgatggtgcatgggagcagtttctttt
agctagtcctttcttagaaaatattgaaggtacaaaggaagatggcgaag
agcctgctgatgctagaatggaggtggaaccaatagtatctgatctggat
gaatcacaaaattttgattatttagtcgagcaaatgaagaaatctcagaa
ctttgcatcggattcaacagttgatggatctaatatggagagctctcaaa
acttggagtttattactgaacaaatgggacatttggcttctgactctaac
aacatggaacagaatcagggaagcagaaggacaacttctgtgtaa
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