BZIP18, HM122470.1-BZIP18.m1 (mRNA) Malus x domestica

Transcript Overview
NameBZIP18
Unique NameHM122470.1-BZIP18.m1
TypemRNA
OrganismMalus x domestica (Apple)
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
BZIP18BZIP18Malus x domesticagene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
HM122470.1-BZIP18.m1-cds1HM122470.1-BZIP18.m1-cds1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
BZIP18HM122470.1-BZIP18.p1Malus x domesticapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI302398629
nuccoreHM122470.1
Alignments
Feature NameTypeLocationAnalysis
HM122470 region HM122470:121..2646+ NCBI Rosaceae gene and mRNA sequences
Chr15 chromosome Chr15:6405717..6411837- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr3 chromosome chr3:28402800..28408886- Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr3 chromosome chr3:33393316..33399402+ Malus x domestica Whole Genome v1.0p Assembly & Annotation
Properties
Property NameValue
ProductBZIP domain class transcription factor
Sourcegenbank
Sequences
The following sequences are available for this feature:

mRNA sequence

>HM122470.1-BZIP18.m1 ID=HM122470.1-BZIP18.m1|Name=BZIP18|organism=Malus x domestica|type=mRNA|length=2526bp
atggctgtgacgtcttcctgcaaagatggtgggatgaagatgcagatgga
caatggcaagtacgtaaggtacacgccggagcaagtggaagctttagagc
ggttgtaccatgagtgcccgaagccgagctccatgcgccgccagcagctc
atccgcgagtgccctatcctctccaacatcgagccgaagcagatcaaagt
ttggttccaaaaccgcagatgcagagagaagcagcgcaaggaggcgtcga
gattgcagacggtgaacagaaagctgacggcgatgaacaagcttctgatg
gaggagaatgatcggttgcagaagcaggtttctcagctggtctatgagaa
cacctatttccgccagcacacacaaaatgcaactctagcgacgacagaca
cgagttgtgagtcggtggtgacgagcggtcaacaccatttgactgcacag
cagcatccaccaccaagggatgccagccctgcaggacttctgtccattgc
acaggaaactttagcagagtttttatcaaaggccactgggactgctgtgg
agtgggtccaattgcctgggatgaagcctggtccggattccattggaatc
gttgcaatttctcacggttgcactggtgtggcagcacgtgcatgcggcct
tgtaggtctagaccctacaagagtcgctgaaatcctcaaagatcggcctt
cgtggttccgaaattgccgatctgtggatgtggccaatgtaatgtccact
ggcaatggtggaaccattgaactgctttacatgcagctctatgcacccac
gactttggcaccagctcgagacttctggttgcttcgctacacatcggttc
tagaagacggtagtcttgtggtctgtgaaagatcacttaacaacacacag
aatggtcctagcatgccaccagtgcagaattttgtgagagcggaaatgct
gccgagcgggtatctaattagaccttgtgaaggtggtggctcgatccttc
acattgttgatcatatggatttagagccttggagtgtacctgaagtgttg
cgcccgctttatgagtcatcaacaattcttgctcagaagacaactatggc
agcattacgcaacctgaggcagatatctcaagaagtttctcagcctaatt
ctgctggttggggaagaaggcctgcagctctccgtgctcttagtcagaga
ttgagcaagggtttcaatgaagcagttaacgggtttacagatgagggatg
gtctgttctagaaagtgatggtgtcgatgatgttacccttcttgtgaact
cgtctccgggcaagatgatgagtgcaaatctttataccgatggagttcca
tctatgagcactgcagtcttatgtgccaaagcatccatgttactccaaaa
tgtgcctccagccatccttctcagattcttgcgagaacaccgatcagagt
gggctgacagaagcattgatgcttattcagctgctgctgttaaagctggt
ccctgcaacatgctagggcctcgagttggaagtttcggggataatgttat
tcttcccctggctcacacaattgagcacgaagagttcatggaggtcatta
agattgagaacttgggccactatcgagaggatatgattatgcctgcagct
gacattttcctcttgcaactgtgtagtggagtggatgagaatgccgtcgg
gacctgctctgaactagtatttgctcccatcgatgcatcattttcggatg
atgctccaattctaccttctggtttccggatcatccctcttgattctcgg
atggatactcccagtccaaaccgtacacttgatctggcctcagctcttga
agttggacccgcaggaagcagagcatctggtgataatgctggccactctg
gcaatacaaagtccgtaatgacaatagcattccagtttgcatttgaaatt
cacctacaagaaaatgtagcctccatggctcggcagtatgtgcgcagtat
catagcatcagtgcagagggtggcactggcgctctccccttctcgttttg
gttctcatgctggtttccggcctccacctggcactccccaagcacaaaca
cttgctggttggatttgtcagagctataggtgctatctaggtggagaact
actaaaaaccgaaggaagcgagtccattctcaaatccctttggcatcacc
cggatgcaatcttatgctgctctttgaaggcaatgccaatttttacattc
ggaaaccaggcaggcctggacatgcttgagacgacgttagttgcacttca
agacattacgctggaaaagattttcgatgacaatggaaggaagacactat
gctccgagttcccgcagataatgcagcagggttttatgtgtcatcaagga
ggaatatgcatgtcaagcatgggaaggccgatctcgtacgagagagcggt
agcatggaaggtgctgaatgaagaagaaaccgctcactgcatctgcttca
tgttcatcaactggtcatttgtttaa
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protein sequence of BZIP18

>HM122470.1-BZIP18.p1 ID=HM122470.1-BZIP18.p1|Name=BZIP18|organism=Malus x domestica|type=polypeptide|length=841bp
MAVTSSCKDGGMKMQMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQL
IRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLM
EENDRLQKQVSQLVYENTYFRQHTQNATLATTDTSCESVVTSGQHHLTAQ
QHPPPRDASPAGLLSIAQETLAEFLSKATGTAVEWVQLPGMKPGPDSIGI
VAISHGCTGVAARACGLVGLDPTRVAEILKDRPSWFRNCRSVDVANVMST
GNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQ
NGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSILHIVDHMDLEPWSVPEVL
RPLYESSTILAQKTTMAALRNLRQISQEVSQPNSAGWGRRPAALRALSQR
LSKGFNEAVNGFTDEGWSVLESDGVDDVTLLVNSSPGKMMSANLYTDGVP
SMSTAVLCAKASMLLQNVPPAILLRFLREHRSEWADRSIDAYSAAAVKAG
PCNMLGPRVGSFGDNVILPLAHTIEHEEFMEVIKIENLGHYREDMIMPAA
DIFLLQLCSGVDENAVGTCSELVFAPIDASFSDDAPILPSGFRIIPLDSR
MDTPSPNRTLDLASALEVGPAGSRASGDNAGHSGNTKSVMTIAFQFAFEI
HLQENVASMARQYVRSIIASVQRVALALSPSRFGSHAGFRPPPGTPQAQT
LAGWICQSYRCYLGGELLKTEGSESILKSLWHHPDAILCCSLKAMPIFTF
GNQAGLDMLETTLVALQDITLEKIFDDNGRKTLCSEFPQIMQQGFMCHQG
GICMSSMGRPISYERAVAWKVLNEEETAHCICFMFINWSFV
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mRNA from alignment at HM122470:121..2646+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>HM122470.1-BZIP18.m1 ID=HM122470.1-BZIP18.m1|Name=BZIP18|organism=Malus x domestica|type=mRNA|length=2526bp|location=Sequence derived from alignment at HM122470:121..2646+ (Malus x domestica)
atggctgtgacgtcttcctgcaaagatggtgggatgaagatgcagatgga caatggcaagtacgtaaggtacacgccggagcaagtggaagctttagagc ggttgtaccatgagtgcccgaagccgagctccatgcgccgccagcagctc atccgcgagtgccctatcctctccaacatcgagccgaagcagatcaaagt ttggttccaaaaccgcagatgcagagagaagcagcgcaaggaggcgtcga gattgcagacggtgaacagaaagctgacggcgatgaacaagcttctgatg gaggagaatgatcggttgcagaagcaggtttctcagctggtctatgagaa cacctatttccgccagcacacacaaaatgcaactctagcgacgacagaca cgagttgtgagtcggtggtgacgagcggtcaacaccatttgactgcacag cagcatccaccaccaagggatgccagccctgcaggacttctgtccattgc acaggaaactttagcagagtttttatcaaaggccactgggactgctgtgg agtgggtccaattgcctgggatgaagcctggtccggattccattggaatc gttgcaatttctcacggttgcactggtgtggcagcacgtgcatgcggcct tgtaggtctagaccctacaagagtcgctgaaatcctcaaagatcggcctt cgtggttccgaaattgccgatctgtggatgtggccaatgtaatgtccact ggcaatggtggaaccattgaactgctttacatgcagctctatgcacccac gactttggcaccagctcgagacttctggttgcttcgctacacatcggttc tagaagacggtagtcttgtggtctgtgaaagatcacttaacaacacacag aatggtcctagcatgccaccagtgcagaattttgtgagagcggaaatgct gccgagcgggtatctaattagaccttgtgaaggtggtggctcgatccttc acattgttgatcatatggatttagagccttggagtgtacctgaagtgttg cgcccgctttatgagtcatcaacaattcttgctcagaagacaactatggc agcattacgcaacctgaggcagatatctcaagaagtttctcagcctaatt ctgctggttggggaagaaggcctgcagctctccgtgctcttagtcagaga ttgagcaagggtttcaatgaagcagttaacgggtttacagatgagggatg gtctgttctagaaagtgatggtgtcgatgatgttacccttcttgtgaact cgtctccgggcaagatgatgagtgcaaatctttataccgatggagttcca tctatgagcactgcagtcttatgtgccaaagcatccatgttactccaaaa tgtgcctccagccatccttctcagattcttgcgagaacaccgatcagagt gggctgacagaagcattgatgcttattcagctgctgctgttaaagctggt ccctgcaacatgctagggcctcgagttggaagtttcggggataatgttat tcttcccctggctcacacaattgagcacgaagagttcatggaggtcatta agattgagaacttgggccactatcgagaggatatgattatgcctgcagct gacattttcctcttgcaactgtgtagtggagtggatgagaatgccgtcgg gacctgctctgaactagtatttgctcccatcgatgcatcattttcggatg atgctccaattctaccttctggtttccggatcatccctcttgattctcgg atggatactcccagtccaaaccgtacacttgatctggcctcagctcttga agttggacccgcaggaagcagagcatctggtgataatgctggccactctg gcaatacaaagtccgtaatgacaatagcattccagtttgcatttgaaatt cacctacaagaaaatgtagcctccatggctcggcagtatgtgcgcagtat catagcatcagtgcagagggtggcactggcgctctccccttctcgttttg gttctcatgctggtttccggcctccacctggcactccccaagcacaaaca cttgctggttggatttgtcagagctataggtgctatctaggtggagaact actaaaaaccgaaggaagcgagtccattctcaaatccctttggcatcacc cggatgcaatcttatgctgctctttgaaggcaatgccaatttttacattc ggaaaccaggcaggcctggacatgcttgagacgacgttagttgcacttca agacattacgctggaaaagattttcgatgacaatggaaggaagacactat gctccgagttcccgcagataatgcagcagggttttatgtgtcatcaagga ggaatatgcatgtcaagcatgggaaggccgatctcgtacgagagagcggt agcatggaaggtgctgaatgaagaagaaaccgctcactgcatctgcttca tgttcatcaactggtcatttgtttaa
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Coding sequence (CDS) from alignment at HM122470:121..2646+

>HM122470.1-BZIP18.m1 ID=HM122470.1-BZIP18.m1|Name=BZIP18|organism=Malus x domestica|type=CDS|length=2526bp|location=Sequence derived from alignment at HM122470:121..2646+ (Malus x domestica)
atggctgtgacgtcttcctgcaaagatggtgggatgaagatgcagatgga
caatggcaagtacgtaaggtacacgccggagcaagtggaagctttagagc
ggttgtaccatgagtgcccgaagccgagctccatgcgccgccagcagctc
atccgcgagtgccctatcctctccaacatcgagccgaagcagatcaaagt
ttggttccaaaaccgcagatgcagagagaagcagcgcaaggaggcgtcga
gattgcagacggtgaacagaaagctgacggcgatgaacaagcttctgatg
gaggagaatgatcggttgcagaagcaggtttctcagctggtctatgagaa
cacctatttccgccagcacacacaaaatgcaactctagcgacgacagaca
cgagttgtgagtcggtggtgacgagcggtcaacaccatttgactgcacag
cagcatccaccaccaagggatgccagccctgcaggacttctgtccattgc
acaggaaactttagcagagtttttatcaaaggccactgggactgctgtgg
agtgggtccaattgcctgggatgaagcctggtccggattccattggaatc
gttgcaatttctcacggttgcactggtgtggcagcacgtgcatgcggcct
tgtaggtctagaccctacaagagtcgctgaaatcctcaaagatcggcctt
cgtggttccgaaattgccgatctgtggatgtggccaatgtaatgtccact
ggcaatggtggaaccattgaactgctttacatgcagctctatgcacccac
gactttggcaccagctcgagacttctggttgcttcgctacacatcggttc
tagaagacggtagtcttgtggtctgtgaaagatcacttaacaacacacag
aatggtcctagcatgccaccagtgcagaattttgtgagagcggaaatgct
gccgagcgggtatctaattagaccttgtgaaggtggtggctcgatccttc
acattgttgatcatatggatttagagccttggagtgtacctgaagtgttg
cgcccgctttatgagtcatcaacaattcttgctcagaagacaactatggc
agcattacgcaacctgaggcagatatctcaagaagtttctcagcctaatt
ctgctggttggggaagaaggcctgcagctctccgtgctcttagtcagaga
ttgagcaagggtttcaatgaagcagttaacgggtttacagatgagggatg
gtctgttctagaaagtgatggtgtcgatgatgttacccttcttgtgaact
cgtctccgggcaagatgatgagtgcaaatctttataccgatggagttcca
tctatgagcactgcagtcttatgtgccaaagcatccatgttactccaaaa
tgtgcctccagccatccttctcagattcttgcgagaacaccgatcagagt
gggctgacagaagcattgatgcttattcagctgctgctgttaaagctggt
ccctgcaacatgctagggcctcgagttggaagtttcggggataatgttat
tcttcccctggctcacacaattgagcacgaagagttcatggaggtcatta
agattgagaacttgggccactatcgagaggatatgattatgcctgcagct
gacattttcctcttgcaactgtgtagtggagtggatgagaatgccgtcgg
gacctgctctgaactagtatttgctcccatcgatgcatcattttcggatg
atgctccaattctaccttctggtttccggatcatccctcttgattctcgg
atggatactcccagtccaaaccgtacacttgatctggcctcagctcttga
agttggacccgcaggaagcagagcatctggtgataatgctggccactctg
gcaatacaaagtccgtaatgacaatagcattccagtttgcatttgaaatt
cacctacaagaaaatgtagcctccatggctcggcagtatgtgcgcagtat
catagcatcagtgcagagggtggcactggcgctctccccttctcgttttg
gttctcatgctggtttccggcctccacctggcactccccaagcacaaaca
cttgctggttggatttgtcagagctataggtgctatctaggtggagaact
actaaaaaccgaaggaagcgagtccattctcaaatccctttggcatcacc
cggatgcaatcttatgctgctctttgaaggcaatgccaatttttacattc
ggaaaccaggcaggcctggacatgcttgagacgacgttagttgcacttca
agacattacgctggaaaagattttcgatgacaatggaaggaagacactat
gctccgagttcccgcagataatgcagcagggttttatgtgtcatcaagga
ggaatatgcatgtcaagcatgggaaggccgatctcgtacgagagagcggt
agcatggaaggtgctgaatgaagaagaaaccgctcactgcatctgcttca
tgttcatcaactggtcatttgtttaa
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