CRY1, GQ497942.1-CRY1.m1 (mRNA) Fragaria vesca

Transcript Overview
NameCRY1
Unique NameGQ497942.1-CRY1.m1
TypemRNA
OrganismFragaria vesca (Woodland strawberry (diploid))
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
CRY1CRY1Fragaria vescagene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
GQ497942.1-CRY1.m1-cds1GQ497942.1-CRY1.m1-cds1Fragaria vescaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CRY1GQ497942.1-CRY1.p1Fragaria vescapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI259019315
nuccoreGQ497942.1
Alignments
Feature NameTypeLocationAnalysis
GQ497942 region GQ497942:1..2022+ NCBI Rosaceae gene and mRNA sequences
LG5 chromosome LG5:27617864..27621219+ Fragaria vesca Whole Genome v1.0 (build 8) Assembly & Annotation
Properties
Property NameValue
ProductCRY1
Sourcegenbank
Genbank noteblue light photoreceptor; FvCRY1
Sequences
The following sequences are available for this feature:

mRNA sequence

>GQ497942.1-CRY1.m1 ID=GQ497942.1-CRY1.m1|Name=CRY1|organism=Fragaria vesca|type=mRNA|length=2022bp
atgtcaggtggtagtggttgcagtgtagtttggttcaggagagatctgag
ggttgaagacaatccagctttgttagctggagttagagcaggaggagttg
ttgctctttttatttgggcacctgaggaagaagggccttattacccagga
agggtctcaaggtggtggctcaaacacagtttggcacatcttgattcctc
tttgagaagtttgggcactcctctcatcaccaaaaaatctactgacagtg
tttcttctcttcttgaggtttgtcttgcaactggagccactcagctcttc
ttcaaccacttatatgatcctatatcactggttagagatcacagggccaa
ggaggttttgtccgccaacggcataactgtgcgttcctttaacgccgatt
tgctctatgaaccatgggatgttaatgatgtccacggtcgtccattcaca
acctttgatgctttttgggaaagatgcctcagcatgccctttgatccaga
ggcaccacttctcccccctaagagaatcatatcaggtgatgcatcaaggt
gtcctcctgatacattggtttttgaagatgaatcagagaagggaagcaat
gcgctacttgctcgagcatggtcacctgggtggagcagtgctgataaggc
agtaaccacatttattaatggtccattgatcgagtattccacaaaccgca
gaaaggctgatagtaatacaacttcactgctttctccccatttgcatttt
ggggaggtaagtgtcagaaaagtatttcatcttatacgcatcaagcagtt
gctttgggccaatgaaggtaacaaggctggtgaagagagtgtgaacttgt
ttctgaaatctattggtcttagggagtattcaagatacattagtttcaat
catccttacagtcatgaaagacctcttcttgggcacctaaaattcttccc
ctgggttataaatcagaactatttcaaggcatggaggcaaggtcgaactg
gctatccgttggtggatgctggcatgagagaattgtgggctactggctgg
ctgcatgatcggatacgagttgttgtttctagtttcttcgtaaaggttct
gcagctcccgtggaggtggggaatgaagtatttctgggacacactcttag
atgctgatcttgaaagtgatgctcttggttggcagtatatatccggcact
atccctgatgggcgtgagtttgaccgcatagataatccacagtttgaggg
ttacaagtgtgatccacatggagaatatgtgcgaaggtggcttcctgaac
tatccaggctaccaactgactggatacaccacccatggaatgcaccagag
tctgtactccaggcagctggaattgaacttggatcaaattacccccttcc
tattgtaggaatagaagcagcaaaatccaggttgcaagaagcgttaactg
aaatgtggcagcatgaacgagccgctgctgagaatggaactgaagaaggg
ctcggagagtcttctgaatcaacctccattgcgtttcctgaagacataca
aatggaggatagtcatgaacaggtgaggaataaccctcctcctccaactc
gacgctatgaggatcagatggtccctagtatcactacttccctcgtgcga
gttgaagaggaagaaagttctttggatcttccaagcagagctgaagtgcc
tacaaatgttactggggatcaagaaccaatgagagacacaatgaaccaag
agggttttcagcctaatcataacaacactccaccacaacctaatactaca
ctaaccctgcagtatgttgttgaagattcgacggcggaatcgtctagcag
tactaggagagagagggatggaggtgtagttccagtttggtctccttcaa
attctagctactcagagcagtttgtgagtgatgaaaatggcattgcaaca
agttcttacttgcagagacatcctcagtctcaccaaataatgaattggag
gcggctatctcaaactgggtaa
back to top

protein sequence of CRY1

>GQ497942.1-CRY1.p1 ID=GQ497942.1-CRY1.p1|Name=CRY1|organism=Fragaria vesca|type=polypeptide|length=673bp
MSGGSGCSVVWFRRDLRVEDNPALLAGVRAGGVVALFIWAPEEEGPYYPG
RVSRWWLKHSLAHLDSSLRSLGTPLITKKSTDSVSSLLEVCLATGATQLF
FNHLYDPISLVRDHRAKEVLSANGITVRSFNADLLYEPWDVNDVHGRPFT
TFDAFWERCLSMPFDPEAPLLPPKRIISGDASRCPPDTLVFEDESEKGSN
ALLARAWSPGWSSADKAVTTFINGPLIEYSTNRRKADSNTTSLLSPHLHF
GEVSVRKVFHLIRIKQLLWANEGNKAGEESVNLFLKSIGLREYSRYISFN
HPYSHERPLLGHLKFFPWVINQNYFKAWRQGRTGYPLVDAGMRELWATGW
LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT
IPDGREFDRIDNPQFEGYKCDPHGEYVRRWLPELSRLPTDWIHHPWNAPE
SVLQAAGIELGSNYPLPIVGIEAAKSRLQEALTEMWQHERAAAENGTEEG
LGESSESTSIAFPEDIQMEDSHEQVRNNPPPPTRRYEDQMVPSITTSLVR
VEEEESSLDLPSRAEVPTNVTGDQEPMRDTMNQEGFQPNHNNTPPQPNTT
LTLQYVVEDSTAESSSSTRRERDGGVVPVWSPSNSSYSEQFVSDENGIAT
SSYLQRHPQSHQIMNWRRLSQTG
back to top

mRNA from alignment at GQ497942:1..2022+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>GQ497942.1-CRY1.m1 ID=GQ497942.1-CRY1.m1|Name=CRY1|organism=Fragaria vesca|type=mRNA|length=2022bp|location=Sequence derived from alignment at GQ497942:1..2022+ (Fragaria vesca)
atgtcaggtggtagtggttgcagtgtagtttggttcaggagagatctgag ggttgaagacaatccagctttgttagctggagttagagcaggaggagttg ttgctctttttatttgggcacctgaggaagaagggccttattacccagga agggtctcaaggtggtggctcaaacacagtttggcacatcttgattcctc tttgagaagtttgggcactcctctcatcaccaaaaaatctactgacagtg tttcttctcttcttgaggtttgtcttgcaactggagccactcagctcttc ttcaaccacttatatgatcctatatcactggttagagatcacagggccaa ggaggttttgtccgccaacggcataactgtgcgttcctttaacgccgatt tgctctatgaaccatgggatgttaatgatgtccacggtcgtccattcaca acctttgatgctttttgggaaagatgcctcagcatgccctttgatccaga ggcaccacttctcccccctaagagaatcatatcaggtgatgcatcaaggt gtcctcctgatacattggtttttgaagatgaatcagagaagggaagcaat gcgctacttgctcgagcatggtcacctgggtggagcagtgctgataaggc agtaaccacatttattaatggtccattgatcgagtattccacaaaccgca gaaaggctgatagtaatacaacttcactgctttctccccatttgcatttt ggggaggtaagtgtcagaaaagtatttcatcttatacgcatcaagcagtt gctttgggccaatgaaggtaacaaggctggtgaagagagtgtgaacttgt ttctgaaatctattggtcttagggagtattcaagatacattagtttcaat catccttacagtcatgaaagacctcttcttgggcacctaaaattcttccc ctgggttataaatcagaactatttcaaggcatggaggcaaggtcgaactg gctatccgttggtggatgctggcatgagagaattgtgggctactggctgg ctgcatgatcggatacgagttgttgtttctagtttcttcgtaaaggttct gcagctcccgtggaggtggggaatgaagtatttctgggacacactcttag atgctgatcttgaaagtgatgctcttggttggcagtatatatccggcact atccctgatgggcgtgagtttgaccgcatagataatccacagtttgaggg ttacaagtgtgatccacatggagaatatgtgcgaaggtggcttcctgaac tatccaggctaccaactgactggatacaccacccatggaatgcaccagag tctgtactccaggcagctggaattgaacttggatcaaattacccccttcc tattgtaggaatagaagcagcaaaatccaggttgcaagaagcgttaactg aaatgtggcagcatgaacgagccgctgctgagaatggaactgaagaaggg ctcggagagtcttctgaatcaacctccattgcgtttcctgaagacataca aatggaggatagtcatgaacaggtgaggaataaccctcctcctccaactc gacgctatgaggatcagatggtccctagtatcactacttccctcgtgcga gttgaagaggaagaaagttctttggatcttccaagcagagctgaagtgcc tacaaatgttactggggatcaagaaccaatgagagacacaatgaaccaag agggttttcagcctaatcataacaacactccaccacaacctaatactaca ctaaccctgcagtatgttgttgaagattcgacggcggaatcgtctagcag tactaggagagagagggatggaggtgtagttccagtttggtctccttcaa attctagctactcagagcagtttgtgagtgatgaaaatggcattgcaaca agttcttacttgcagagacatcctcagtctcaccaaataatgaattggag gcggctatctcaaactgggtaa
back to top

Coding sequence (CDS) from alignment at GQ497942:1..2022+

>GQ497942.1-CRY1.m1 ID=GQ497942.1-CRY1.m1|Name=CRY1|organism=Fragaria vesca|type=CDS|length=2022bp|location=Sequence derived from alignment at GQ497942:1..2022+ (Fragaria vesca)
atgtcaggtggtagtggttgcagtgtagtttggttcaggagagatctgag
ggttgaagacaatccagctttgttagctggagttagagcaggaggagttg
ttgctctttttatttgggcacctgaggaagaagggccttattacccagga
agggtctcaaggtggtggctcaaacacagtttggcacatcttgattcctc
tttgagaagtttgggcactcctctcatcaccaaaaaatctactgacagtg
tttcttctcttcttgaggtttgtcttgcaactggagccactcagctcttc
ttcaaccacttatatgatcctatatcactggttagagatcacagggccaa
ggaggttttgtccgccaacggcataactgtgcgttcctttaacgccgatt
tgctctatgaaccatgggatgttaatgatgtccacggtcgtccattcaca
acctttgatgctttttgggaaagatgcctcagcatgccctttgatccaga
ggcaccacttctcccccctaagagaatcatatcaggtgatgcatcaaggt
gtcctcctgatacattggtttttgaagatgaatcagagaagggaagcaat
gcgctacttgctcgagcatggtcacctgggtggagcagtgctgataaggc
agtaaccacatttattaatggtccattgatcgagtattccacaaaccgca
gaaaggctgatagtaatacaacttcactgctttctccccatttgcatttt
ggggaggtaagtgtcagaaaagtatttcatcttatacgcatcaagcagtt
gctttgggccaatgaaggtaacaaggctggtgaagagagtgtgaacttgt
ttctgaaatctattggtcttagggagtattcaagatacattagtttcaat
catccttacagtcatgaaagacctcttcttgggcacctaaaattcttccc
ctgggttataaatcagaactatttcaaggcatggaggcaaggtcgaactg
gctatccgttggtggatgctggcatgagagaattgtgggctactggctgg
ctgcatgatcggatacgagttgttgtttctagtttcttcgtaaaggttct
gcagctcccgtggaggtggggaatgaagtatttctgggacacactcttag
atgctgatcttgaaagtgatgctcttggttggcagtatatatccggcact
atccctgatgggcgtgagtttgaccgcatagataatccacagtttgaggg
ttacaagtgtgatccacatggagaatatgtgcgaaggtggcttcctgaac
tatccaggctaccaactgactggatacaccacccatggaatgcaccagag
tctgtactccaggcagctggaattgaacttggatcaaattacccccttcc
tattgtaggaatagaagcagcaaaatccaggttgcaagaagcgttaactg
aaatgtggcagcatgaacgagccgctgctgagaatggaactgaagaaggg
ctcggagagtcttctgaatcaacctccattgcgtttcctgaagacataca
aatggaggatagtcatgaacaggtgaggaataaccctcctcctccaactc
gacgctatgaggatcagatggtccctagtatcactacttccctcgtgcga
gttgaagaggaagaaagttctttggatcttccaagcagagctgaagtgcc
tacaaatgttactggggatcaagaaccaatgagagacacaatgaaccaag
agggttttcagcctaatcataacaacactccaccacaacctaatactaca
ctaaccctgcagtatgttgttgaagattcgacggcggaatcgtctagcag
tactaggagagagagggatggaggtgtagttccagtttggtctccttcaa
attctagctactcagagcagtttgtgagtgatgaaaatggcattgcaaca
agttcttacttgcagagacatcctcagtctcaccaaataatgaattggag
gcggctatctcaaactgggtaa
back to top