IPT, DQ792508.1-IPT.m1 (mRNA) Malus hupehensis

Transcript Overview
NameIPT
Unique NameDQ792508.1-IPT.m1
TypemRNA
OrganismMalus hupehensis ()
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2014-12-31
Relationships

This mRNA is associated with the following gene feature(s):

Feature NameUnique NameSpeciesType
IPTIPTMalus hupehensisgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
DQ792508.1-IPT.m1-cds1DQ792508.1-IPT.m1-cds1Malus hupehensisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
IPTDQ792508.1-IPT.p1Malus hupehensispolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI110671857
nuccoreDQ792508.1
Alignments
Feature NameTypeLocationAnalysis
DQ792508 region DQ792508:201..1163+ NCBI Rosaceae gene and mRNA sequences
Chr03 chromosome Chr03:35283549..35284511+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr3 chromosome chr3:31482982..31483944- Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr3 chromosome chr3:37001355..37002317+ Malus x domestica Whole Genome v1.0p Assembly & Annotation
Properties
Property NameValue
Productisopentenyltransferase
Sourcegenbank
Genbank noteMhIPT
Sequences
The following sequences are available for this feature:

mRNA sequence

>DQ792508.1-IPT.m1 ID=DQ792508.1-IPT.m1|Name=IPT|organism=Malus hupehensis|type=mRNA|length=963bp
atgatgccaatgtgcaaacaaatacaaacattactacatgttccatctag
tggccataatcataaaatggacgtgttcaatcctcaccggcagaaggaga
aggtggtgatcgtaatgggagcaacagggaccggaaagtcaaggctctcc
atcgacctagccacctgtttcccggcagaaatcataaactccgacaaaat
gcaagtctacgaaggccttgacatagtcaccaacaaaataaccaaagaag
agcaacgtggtgtaccgcaccatttgctagggatgctagatcctcatgaa
gattttactgccagggatttttgtgacctaacctcaattgccattgaatc
cattttaggccgtgatcggcttccaatcatcgttggaggttccaactctt
acatcgaggcgttgatcgatgattatgactataaatttcggtccaagtat
gactgttgctttttatgggtagatgtgtctacacccgctctgcactcttt
tgtgtcaaaacgggtagaccacatggttcaaaacggaatggtggatgagg
cgagagagtactttgatcccaatgcagattacacgaaagggattcgaaga
gcaataggggtccctgaattcgataagtacttcaggtatgggccattttt
ggaagaagaaactcgtgctcggttactacgacaagcagtggacgaaatta
aggacaatacgtgcaaattggcatgtcggcaactggagaagattcataga
cttagaaatatcaaagggtggaatctgcacccgttggatgccacggaggt
gttccgaaagcgcggcgaagaggccgacgaggcctggaaaaagcttgtgt
cggggacaagtgctatgatcgttggccagtttctttacaatatgacagct
gaggttcctccacatcttggaagccttagggttcttgaagcacttgcagc
tgcaactcactag
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protein sequence of IPT

>DQ792508.1-IPT.p1 ID=DQ792508.1-IPT.p1|Name=IPT|organism=Malus hupehensis|type=polypeptide|length=320bp
MMPMCKQIQTLLHVPSSGHNHKMDVFNPHRQKEKVVIVMGATGTGKSRLS
IDLATCFPAEIINSDKMQVYEGLDIVTNKITKEEQRGVPHHLLGMLDPHE
DFTARDFCDLTSIAIESILGRDRLPIIVGGSNSYIEALIDDYDYKFRSKY
DCCFLWVDVSTPALHSFVSKRVDHMVQNGMVDEAREYFDPNADYTKGIRR
AIGVPEFDKYFRYGPFLEEETRARLLRQAVDEIKDNTCKLACRQLEKIHR
LRNIKGWNLHPLDATEVFRKRGEEADEAWKKLVSGTSAMIVGQFLYNMTA
EVPPHLGSLRVLEALAAATH
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mRNA from alignment at DQ792508:201..1163+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>DQ792508.1-IPT.m1 ID=DQ792508.1-IPT.m1|Name=IPT|organism=Malus hupehensis|type=mRNA|length=963bp|location=Sequence derived from alignment at DQ792508:201..1163+ (Malus hupehensis)
atgatgccaatgtgcaaacaaatacaaacattactacatgttccatctag tggccataatcataaaatggacgtgttcaatcctcaccggcagaaggaga aggtggtgatcgtaatgggagcaacagggaccggaaagtcaaggctctcc atcgacctagccacctgtttcccggcagaaatcataaactccgacaaaat gcaagtctacgaaggccttgacatagtcaccaacaaaataaccaaagaag agcaacgtggtgtaccgcaccatttgctagggatgctagatcctcatgaa gattttactgccagggatttttgtgacctaacctcaattgccattgaatc cattttaggccgtgatcggcttccaatcatcgttggaggttccaactctt acatcgaggcgttgatcgatgattatgactataaatttcggtccaagtat gactgttgctttttatgggtagatgtgtctacacccgctctgcactcttt tgtgtcaaaacgggtagaccacatggttcaaaacggaatggtggatgagg cgagagagtactttgatcccaatgcagattacacgaaagggattcgaaga gcaataggggtccctgaattcgataagtacttcaggtatgggccattttt ggaagaagaaactcgtgctcggttactacgacaagcagtggacgaaatta aggacaatacgtgcaaattggcatgtcggcaactggagaagattcataga cttagaaatatcaaagggtggaatctgcacccgttggatgccacggaggt gttccgaaagcgcggcgaagaggccgacgaggcctggaaaaagcttgtgt cggggacaagtgctatgatcgttggccagtttctttacaatatgacagct gaggttcctccacatcttggaagccttagggttcttgaagcacttgcagc tgcaactcactag
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Coding sequence (CDS) from alignment at DQ792508:201..1163+

>DQ792508.1-IPT.m1 ID=DQ792508.1-IPT.m1|Name=IPT|organism=Malus hupehensis|type=CDS|length=963bp|location=Sequence derived from alignment at DQ792508:201..1163+ (Malus hupehensis)
atgatgccaatgtgcaaacaaatacaaacattactacatgttccatctag
tggccataatcataaaatggacgtgttcaatcctcaccggcagaaggaga
aggtggtgatcgtaatgggagcaacagggaccggaaagtcaaggctctcc
atcgacctagccacctgtttcccggcagaaatcataaactccgacaaaat
gcaagtctacgaaggccttgacatagtcaccaacaaaataaccaaagaag
agcaacgtggtgtaccgcaccatttgctagggatgctagatcctcatgaa
gattttactgccagggatttttgtgacctaacctcaattgccattgaatc
cattttaggccgtgatcggcttccaatcatcgttggaggttccaactctt
acatcgaggcgttgatcgatgattatgactataaatttcggtccaagtat
gactgttgctttttatgggtagatgtgtctacacccgctctgcactcttt
tgtgtcaaaacgggtagaccacatggttcaaaacggaatggtggatgagg
cgagagagtactttgatcccaatgcagattacacgaaagggattcgaaga
gcaataggggtccctgaattcgataagtacttcaggtatgggccattttt
ggaagaagaaactcgtgctcggttactacgacaagcagtggacgaaatta
aggacaatacgtgcaaattggcatgtcggcaactggagaagattcataga
cttagaaatatcaaagggtggaatctgcacccgttggatgccacggaggt
gttccgaaagcgcggcgaagaggccgacgaggcctggaaaaagcttgtgt
cggggacaagtgctatgatcgttggccagtttctttacaatatgacagct
gaggttcctccacatcttggaagccttagggttcttgaagcacttgcagc
tgcaactcactag
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