SNP_FB_0767171, SNP_FB_0767171 (genetic_marker) Malus x domestica

Marker Overview
NameSNP_FB_0767171
AliasF_0767171_L8_PA
dbSNP ID.
SNP Array ID
480K SNP array for apple:AX-115198469
20K SNP array for apple:SNP_FB_0767171
TypeSNP
SNP AllelesT/C
Probe 1SNP_FB_0767171.probe: CAATTTGCACTAAGTTTGGCCACGCTCCTAAACAATGTCCATGGAGGGGA
5' Flanking SequenceTAACACGCCRCCCGTATATTTCATNGCCCTTGCCAACTTGAGTTATGCNGAAGGGGAGAN
3' Flanking SequenceTCCCCTCCATGGACATTGTTTAGGAGCGTGGCCAAACTTAGTGCAAATTGGACAACTAGA
SpeciesMalus x domestica
Primer 1SNP_FB_0767171.S8_171_For: ACCCCGGGCATTCTGAGAT
Primer 2SNP_FB_0767171.S8_171_Rev: TGTAAAGGCTGTTGCAAACTCTC
Primer 3SNP_FB_0767171.S8_171_TSP: AAACCATGGAGGGGAC
Publication[view all]
ContactMichela Troggio
CommentTSP (Temperature Switch PCR) primers
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
S8_171_ForSNP_FB_0767171.S8_171_ForMalus x domesticaprimer
S8_171_RevSNP_FB_0767171.S8_171_RevMalus x domesticaprimer
S8_171_TSPSNP_FB_0767171.S8_171_TSPMalus x domesticaprimer


The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeSNP_FB_0767171.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
SNP_FB_0767171SNP_FB_0767171Malus x domesticamarker_locus


Sequence
>SNP_FB_0767171 ID=SNP_FB_0767171|Name=SNP_FB_0767171|organism=Malus x domestica|type=genetic_marker|length=41bp
A[A/G]TCCCCTCCATGGACATTGTTTAGGAGCGTGGCCAA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-RGTxGD-F1-2015GD_8N/A66.86SNP_FB_0767171View
Alignments
Feature NameTypeLocationAnalysis
Chr08 chromosome Chr08:30245590..30245590- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation