SNP_FB_0769013, SNP_FB_0769013 (genetic_marker) Malus x domestica

Marker Overview
NameSNP_FB_0769013
AliasF_0769013_L8_PA
dbSNP ID.
SNP Array ID
480K SNP array for apple:AX-115198500
20K SNP array for apple:SNP_FB_0769013
TypeSNP
SNP AllelesA/C
Probe 1SNP_FB_0769013.probe: ATTTTGCACTGTTTGGTGGGGATGATGAGGACAGAACTTGTTGATAACAT
5' Flanking SequenceTGCTTGATCTGTNAACGTGCGTTTCAAGTTTGTGTAGTTGTAGTGTTTATATGTACTGTC
3' Flanking SequenceATGTTATCAACAAGTTCTGTCCTCATCATCCCCACCAAACAGTGCAAAATAAAWTTTCTT
SpeciesMalus x domestica
Primer 1SNP_FB_0769013.S8_013_For: CCAGTTGTTTCAAGGCAGCA
Primer 2SNP_FB_0769013.S8_013_Rev: TGAGCTGGTACCGTGTGCTT
Primer 3SNP_FB_0769013.S8_013_TSP: CCAGTGTTTATATGTACTGTCG
Publication[view all]
ContactMichela Troggio
CommentTSP (Temperature Switch PCR) primers
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
S8_013_ForSNP_FB_0769013.S8_013_ForMalus x domesticaprimer
S8_013_RevSNP_FB_0769013.S8_013_RevMalus x domesticaprimer
S8_013_TSPSNP_FB_0769013.S8_013_TSPMalus x domesticaprimer


The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeSNP_FB_0769013.probeMalus x domesticaprobe


Sequence
>SNP_FB_0769013 ID=SNP_FB_0769013|Name=SNP_FB_0769013|organism=Malus x domestica|type=genetic_marker|length=75bp
AAGTTTGTGTAGTTGTAGTGTTTATATGTACTGTC[G/T]ATGTTATCAA
CAAGTTCTGTCCTCATCATCCCCAC
Alignments
Feature NameTypeLocationAnalysis
Chr08 chromosome Chr08:31217233..31217233- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation