apple-RGxGS-F1-2015

Map Overview

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Nameapple-RGxGS-F1-2015
SpeciesMalus x domestica
Map typegenetic
Map unitcM
Maternal parentRoyal_Gala
Paternal parentGranny_Smith
Number of loci25
Number of QTL1
Number of linkage groups2
Publication[view all]
ContactRoss Atkinson
Map Loci
This map contains 25 features:
Linkage GroupMarker NameLocus NameTypePosition
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_AG_4746500_Lg1_MDP0000213515_MAF40_MDP0000213515_exon1SNP_AG_4746500_Lg1_MDP0000213515_MAF40_MDP0000213515_exon1marker_locus1.5 cM
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_CT_23134240_Lg1_109586__109586_exon1SNP_CT_23134240_Lg1_109586__109586_exon1marker_locus26.6 cM
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_CA_35939850_Lg1_12966_MAF20_12966_exon1RosBREEDSNP_SNP_CA_35939850_Lg1_12966_MAF20_12966_exon1marker_locus58.2 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_GA_30846147_Lg2_261916__261916_exon2SNP_GA_30846147_Lg2_261916__261916_exon2marker_locus45.4 cM
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_GA_124604_Lg1_00288_MAF50_MDP0000929646_exon2RosBREEDSNP_SNP_GA_124604_Lg1_00288_MAF50_MDP0000929646_exon2marker_locus0 cM
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_GA_12390423_Lg1_02334_MAF30_1653937_exon6RosBREEDSNP_SNP_GA_12390423_Lg1_02334_MAF30_1653937_exon6marker_locus9.7 cM
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_GA_18093819_Lg1_01783_MAF10_1653849_exon8RosBREEDSNP_SNP_GA_18093819_Lg1_01783_MAF10_1653849_exon8marker_locus18.8 cM
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_AC_18695269_Lg1_00183_MAF20_MDP0000404072_exon1RosBREEDSNP_SNP_AC_18695269_Lg1_00183_MAF20_MDP0000404072_exon1marker_locus21.1 cM
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_AG_26729463_Lg1_01228_MAF30_459491_exon1RosBREEDSNP_SNP_AG_26729463_Lg1_01228_MAF30_459491_exon1marker_locus34.1 cM
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_AG_27060614_Lg1_01693_MAF40_1665698_exon2RosBREEDSNP_SNP_AG_27060614_Lg1_01693_MAF40_1665698_exon2marker_locus35.6 cM
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_AC_30246914_Lg1_CXE4_MAF50_MDP0000473154_exon2SNP_AC_30246914_Lg1_CXE4_MAF50_MDP0000473154_exon2marker_locus44.6 cM
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_AC_34510440_Lg1_02371_MAF50_1642607_exon7SNP_AC_34510440_Lg1_02371_MAF50_1642607_exon7marker_locus49.1 cM
apple-RGxGS-F1-2015.LG1RosBREEDSNP_SNP_AG_35422934_Lg1_02092_MAF20_7047_exon1RosBREEDSNP_SNP_AG_35422934_Lg1_02092_MAF20_7047_exon1marker_locus50.6 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_TG_1270705_Lg2_01134_MAF10_484985_exon2RosBREEDSNP_SNP_TG_1270705_Lg2_01134_MAF10_484985_exon2marker_locus0 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_GA_1979331_Lg2_AAT1_MAF50_MDP0000307573_exon4RosBREEDSNP_SNP_GA_1979331_Lg2_AAT1_MAF50_MDP0000307573_exon4marker_locus1.5 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_CT_3273690_Lg2_RosCOS1998_MAF30_67740_exon1RosBREEDSNP_SNP_CT_3273690_Lg2_RosCOS1998_MAF30_67740_exon1marker_locus5.2 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_GT_11969851_Lg2_RosCOS2709_MAF30_1618610_exon1RosBREEDSNP_SNP_GT_11969851_Lg2_RosCOS2709_MAF30_1618610_exon1marker_locus25.3 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_AG_16803165_Lg2_RosCOS836_MAF10_406840_exon1RosBREEDSNP_SNP_AG_16803165_Lg2_RosCOS836_MAF10_406840_exon1marker_locus33.8 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_TC_18848241_Lg2_02651_MAF30_1636407_exon1RosBREEDSNP_SNP_TC_18848241_Lg2_02651_MAF30_1636407_exon1marker_locus37.7 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_TC_39549680_Lg2_00167_MAF30_361462_exon1RosBREEDSNP_SNP_TC_39549680_Lg2_00167_MAF30_361462_exon1marker_locus59.8 cM
apple-RGxGS-F1-2015.LG2GDsnp02271GDsnp02271marker_locus46.1 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_CT_7255188_Lg2_00505_MAF50_571945_exon1SNP_CT_7255188_Lg2_00505_MAF50_571945_exon1marker_locus19 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_AG_4411200_Lg2_RosCOS2816_MAF20_176823_exon1RosBREEDSNP_SNP_AG_4411200_Lg2_RosCOS2816_MAF20_176823_exon1marker_locus7.5 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_TG_33257933_Lg2_00629_MAF30_1656170_exon2RosBREEDSNP_SNP_TG_33257933_Lg2_00629_MAF30_1656170_exon2marker_locus48.4 cM
apple-RGxGS-F1-2015.LG2RosBREEDSNP_SNP_TG_36182763_Lg2_00914_MAF20_1649979_exon1RosBREEDSNP_SNP_TG_36182763_Lg2_00914_MAF20_1649979_exon1marker_locus55.9 cM
Page
1
Publication
YearPublications
2015Yauk YK, Chagné D, Tomes S, Matich AJ, Wang MY, Chen X, Maddumage R, Hunt MB, Rowan DD, Atkinson RG. The O-methyltransferase MdoOMT1 is required for biosynthesis of methylated phenylpropenes in ripe apple fruit. The Plant journal : for cell and molecular biology. 2015 Apr 22.
Stock
NameTypeDetails
Royal_Gala_x_Granny_Smith-F1population
Contact
NameDetails
Ross Atkinson
First name:Ross
Last name:Atkinson
Email:ross.atkinson@plantandfood.co.nz
Map QTL
This map contains 1 QTL:
Linkage GroupNameTypeStartStopPeak
apple-RGxGS-F1-2015.LG2qOMT.RGxGS-LG1.2015QTL1.5 cM9.7 cM-
Cross References
External references for this map
DatabaseAccession
GDR CMap163
View Map