Apple-Honeycrisp_Consensus-F1

Map Overview

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NameApple-Honeycrisp_Consensus-F1
SpeciesMalus x domestica
Map typegenetic
Population typeF1
Population size413
CommentsComposite map combining five mapping populations that have Honeycrisp as one of the parents.
Map unitcM
Maternal parentHoneycrisp
Paternal parentPitmaston Pineapple
Number of loci3632
Number of QTL9
Number of linkage groups17
Publication[view all]
ContactJames Luby
Map Loci
This map contains 3,632 features:
Linkage GroupMarker NameLocus NameTypePosition
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_GA_32689962_Lg9_01416_MAF20_MDP0000284744_exon8RosBREEDSNP_SNP_GA_32689962_Lg9_01416_MAF20_MDP0000284744_exon8marker_locus65.68 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_CT_29844947_Lg9_00467_MAF10_1682335_exon3RosBREEDSNP_SNP_CT_29844947_Lg9_00467_MAF10_1682335_exon3marker_locus65.68 cM
Apple-Honeycrisp_Consensus-F1.17GDsnp00809GDsnp00809marker_locus65.68 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1marker_locus65.68 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_GA_25603780_Lg17_00809_MAF40_1670547_exon2RosBREEDSNP_SNP_GA_25603780_Lg17_00809_MAF40_1670547_exon2marker_locus65.68 cM
Apple-Honeycrisp_Consensus-F1.17GDsnp01467GDsnp01467marker_locus64.98 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_GT_25452621_Lg17_01467_MAF50_236982_exon1RosBREEDSNP_SNP_GT_25452621_Lg17_01467_MAF50_236982_exon1marker_locus64.98 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_GT_25445054_Lg17_01467_MAF20_10531_exon1RosBREEDSNP_SNP_GT_25445054_Lg17_01467_MAF20_10531_exon1marker_locus63.96 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_TC_25441435_Lg17_01467_MAF50_681690_exon1RosBREEDSNP_SNP_TC_25441435_Lg17_01467_MAF50_681690_exon1marker_locus63.96 cM
Apple-Honeycrisp_Consensus-F1.17GDsnp00341GDsnp00341marker_locus61.81 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_CT_24829373_Lg17_00341_MAF20_1658353_exon3RosBREEDSNP_SNP_CT_24829373_Lg17_00341_MAF20_1658353_exon3marker_locus61.81 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_CT_24584902_Lg17_02678_MAF30_640777_exon2RosBREEDSNP_SNP_CT_24584902_Lg17_02678_MAF30_640777_exon2marker_locus61.81 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_AC_24544710_Lg17_02678_MAF20_MDP0000131411_exon8RosBREEDSNP_SNP_AC_24544710_Lg17_02678_MAF20_MDP0000131411_exon8marker_locus61.81 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_GA_23178125_Lg17_02534_MAF50_MDP0000515341_exon1RosBREEDSNP_SNP_GA_23178125_Lg17_02534_MAF50_MDP0000515341_exon1marker_locus60.25 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_TC_22794175_Lg17_00798_MAF20_476896_exon1RosBREEDSNP_SNP_TC_22794175_Lg17_00798_MAF20_476896_exon1marker_locus60.25 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_TC_21762855_Lg17_RosCOS2078_MAF20_MDP0000292200_exon11RosBREEDSNP_SNP_TC_21762855_Lg17_RosCOS2078_MAF20_MDP0000292200_exon11marker_locus58.92 cM
Apple-Honeycrisp_Consensus-F1.17RosBREEDSNP_SNP_AG_21759969_Lg17_RosCOS2078_MAF30_549398_exon1RosBREEDSNP_SNP_AG_21759969_Lg17_RosCOS2078_MAF30_549398_exon1marker_locus58.92 cM
Apple-Honeycrisp_Consensus-F1.16RosBREEDSNP_SNP_AG_17594764_Lg13_00390_MAF50_MDP0000199962_exon1RosBREEDSNP_SNP_AG_17594764_Lg13_00390_MAF50_MDP0000199962_exon1marker_locus28.41 cM
Apple-Honeycrisp_Consensus-F1.16RosBREEDSNP_SNP_CA_17569426_Lg13_00390_MAF20_59089_exon1RosBREEDSNP_SNP_CA_17569426_Lg13_00390_MAF20_59089_exon1marker_locus28.24 cM
Apple-Honeycrisp_Consensus-F1.16RosBREEDSNP_SNP_AC_17554961_Lg13_00390_MAF30_27538_exon1RosBREEDSNP_SNP_AC_17554961_Lg13_00390_MAF30_27538_exon1marker_locus28.24 cM
Apple-Honeycrisp_Consensus-F1.16RosBREEDSNP_SNP_AC_17550721_Lg13_00390_MAF40_MDP0000648253_exon1RosBREEDSNP_SNP_AC_17550721_Lg13_00390_MAF40_MDP0000648253_exon1marker_locus28.24 cM
Apple-Honeycrisp_Consensus-F1.16RosBREEDSNP_SNP_TC_17540601_Lg13_00390_MAF40_900958_exon1RosBREEDSNP_SNP_TC_17540601_Lg13_00390_MAF40_900958_exon1marker_locus28.24 cM
Apple-Honeycrisp_Consensus-F1.16RosBREEDSNP_SNP_GA_6845933_Lg16_02194_MAF50_390497_exon1RosBREEDSNP_SNP_GA_6845933_Lg16_02194_MAF50_390497_exon1marker_locus27.26 cM
Apple-Honeycrisp_Consensus-F1.16RosBREEDSNP_SNP_TC_6842969_Lg16_02194_MAF50_27319_exon1RosBREEDSNP_SNP_TC_6842969_Lg16_02194_MAF50_27319_exon1marker_locus27.26 cM
Apple-Honeycrisp_Consensus-F1.16GDsnp02194GDsnp02194marker_locus27.26 cM
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Publication
YearPublications
2017Howard N, van de Weg E, Bedford D, Peace C, Vanderzande S, Clark M, Teh S, Cai L, Luby J. Elucidation of the ‘Honeycrisp’ pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus× domestica) pedigree-connected SNP data set. Horticulture Research. 2017; (4)17003.
2018Howard NP, van de Weg E, Tillman J, Tong CBS, Silverstein KAT, Luby JJ. Two QTL characterized for soft scald and soggy breakdown in apple (Malus x domestica) through pedigree-based analysis of a large population of interconnected families. Tree Genetics and Genomes. 2018; 14(2).
Stock
NameTypeDetails
Honeycrisp_x_Pitmaston_Pineapple-F1population
Contact
NameDetails
James Luby
First name:James
Last name:Luby
Institution:Department of Horticultural Science, University of Minnesota, St. Paul, MN
Address:St Paul, MN 55104
Country:United States
Email:lubyx001@umn.edu
Map QTL
This map contains 9 QTL:
Linkage GroupNameTypeStartStopPeak
Apple-Honeycrisp_Consensus-F1.16qSBD.HoneyCon-LG16.15QTL32 cM38 cM35.1 cM
Apple-Honeycrisp_Consensus-F1.16qSBD.HoneyCon-LG16.14QTL34 cM40 cM37.5 cM
Apple-Honeycrisp_Consensus-F1.16qSCALD.HoneyCon-LG16.15QTL32 cM42 cM35.8 cM
Apple-Honeycrisp_Consensus-F1.16qSCALD.HoneyCon-LG16.14QTL24 cM38 cM30.8 cM
Apple-Honeycrisp_Consensus-F1.13qSCALD.HoneyCon-LG13.14QTL34 cM36 cM34.9 cM
Apple-Honeycrisp_Consensus-F1.2qSBD.HoneyCon-LG02.15QTL0 cM4 cM1.3 cM
Apple-Honeycrisp_Consensus-F1.2qSBD.HoneyCon-LG02.14QTL0 cM4 cM2.3 cM
Apple-Honeycrisp_Consensus-F1.2qSCALD.HoneyCon-LG02.15QTL0 cM4 cM1.2 cM
Apple-Honeycrisp_Consensus-F1.2qSCALD.HoneyCon-LG02.14QTL0 cM8 cM2.8 cM
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