Fragaria_vesca_v4.0.a2 proteins

Human-Readable NameFragaria_vesca_v4.0.a2 proteins
Database NameFragaria_vesca_v4.0.a2_proteins.fa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseJBrowse for Fragaria_vesca_v4.0.a2
RegEx/^(\S+).*/
Link-out Typejbrowse

Fragaria_vesca_v4.0.a2 transcripts

Human-Readable NameFragaria_vesca_v4.0.a2 transcripts
Database NameFragaria_vesca_v4.0.a2_transcripts.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseGDR
RegEx/^(\S+).*/
Link-out Typelink
Resource Links: 
View Alignment in JBrowse|https://www.rosaceae.org/jbrowse/index.html?data=data/fragaria/fvesca_v4.0.a1
Fragaria vesca Whole Genome v4.0.a2 (Re-annotation of v4.0.a1)

Reference

Yongping Li, Mengting Pi, Qi Gao, Zhongchi Liu & Chunying Kang.(2019). Updated annotation of the wild strawberry Fragaria vesca V4 genome. Horticulture Researchvolume 6, Article number: 61

Background

The cultivated strawberry (Fragaria × ananassa, 8x) is an economically important crop worldwide. The diploid strawberry Fragaria vesca serves as an ideal model plant for cultivated strawberry as well as the Rosaceae family. F. vesca... [more]

Resource Titles: 
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Gene Predictions
Resource Blocks: 

All annotation files are available for download by selecting the desired data type in the left-hand "Resources" side bar.  Each data type page will provide a description of the available files and links do download.  Alternatively, you can use the FTP repository for bulk download.

The Fragaria vesca v4.0.a2 gene prediction files are available in FASTA and GFF3 formats.

Downloads

Genes (GFF3 file) Fragaria_vesca_v4.0.a2.genes.gff3.gz
CDS (FASTA file) Fragaria_vesca_v4.0.a2.cds.fa.gz
Proteins (FASTA file) Fragaria_vesca_v4.0.a2.proteins.fa.gz
RNA-Seq analysis and transcriptome assembly of raspberry fruit (Rubus idaeus "Heritage") revealed several candidate genes involved in fruit development and ripening
  • Travisany D, lAyala-Raso A, Genova AD, Monsalve L, Bernales M, Martínez JP, González-Agüero M, Defilippi B, Cherian S, Maass A, Fuentesc L. RNA-Seq analysis and transcriptome assembly of raspberry fruit (Rubus idaeus "Heritage") revealed several candidate genes involved in fruit development and ripening. Scientia Horticulturae 2019 August 25; 254:26-34.
Using Illumina HiSeq ™ 2000 sequencing platform (100 bp double-end reads), we performed transcriptome analysis of flower (F), green (G) and pink (P) fruit stages of red raspberry. Transcriptome was obtained by the de-novo assembly of 298 Million high-quality reads through Trinity assembler, out of the 41,650 high quality transcripts, 18,171 coding sequences were successfully characterized using databases such as UniProtKB, NCBI Non-Redundant, K... [more]
Filling gaps with construction of a genetic linkage map in tetraploid roses
  • Yu C, Luo L, Pan H, Guo X, Wan H, Zhang Q. Filling gaps with construction of a genetic linkage map in tetraploid roses. Frontiers in plant science. 2015; 5:796.
Elucidation of the ‘Honeycrisp’ pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus× domestica) pedigree-connected SNP data set
  • Howard N, van de Weg E, Bedford D, Peace C, Vanderzande S, Clark M, Teh S, Cai L, Luby J. Elucidation of the ‘Honeycrisp’ pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus× domestica) pedigree-connected SNP data set. Horticulture Research. 2017; (4)17003.
The apple (Malus × domestica) cultivar Honeycrisp has become important economically and as a breeding parent. An earlier study with SSR markers indicated the original recorded pedigree of ‘Honeycrisp’ was incorrect and ‘Keepsake’ was identified as one putative parent, the other being unknown. The objective of this study was to verify ‘Keepsake’ as a parent and identify and genetically describe the unknown parent and its grandparen... [more]
Combination of Simple Sequence Repeat, S-Locus Polymorphism and Phenotypic Data for Identification of Tunisian Plum Species (Prunus spp.)
  • Baraket G, Abdallah D, Mustapha S, Tamarzizt H, Salhi-Hannachi A. Combination of Simple Sequence Repeat, S-Locus Polymorphism and Phenotypic Data for Identification of Tunisian Plum Species (Prunus spp.). Biochemical Genetics. 2019 Apr.
Plums (Prunus spp.) are among the first fruit tree species that attracted human interest. Artificial crosses between wild and domesticated species of plums are still paving the way for creation of new phenotypic variability. In Tunisia, despite a considerable varietal richness of plum as well as a high economic value, the plum sector is experiencing a significant regression. The main reason of this regression is the absence of a national pro... [more]