Resource Titles: 
Library Information
Homology
Microsatellite Analysis
eSNP Summary
Contact
Publication
Downloads

Many sequencing projects around the world are depositing ESTs from the genus Prunus in the NCBI dbEST database. However, not all of these ESTs are of high quality. To filter, we crossmatched the public sequences against NCBI's UniVec database and used the BLAST sequence similarity algorithm to remove species-specific chloroplast, mitochondrial, tRNA, and rRNA sequences

To reduce redundancy and create longer transcripts we assembled these ESTs using the CAP3 1 program. For some sequences, we were able to obtain th... [more]

Resource Blocks: 
The Prunus ESTs used for this assembly were downloaded on December 19th, 2005

 

 EST Libraries
 Number of ESTs available  41900
 # of Species  5
 # of Libraries  27
 # of Tissues  11
 # of Development Stages  18

 

View detailed chart of libraries.

 Species
 Prunus armeniaca  15105
 Prunus avium  21
 Prunus cerasus  12
 Prunus dulcis  3864
 Prunus persica  22898

 

Homology was determined using the BLASTx algorithm for the Prunus Contigs and Singlets vs. the Swiss-Prot and TrEMBL databases. Only matches with an E-value of 1.0 e-9 or better were recorded as significant. Swiss-Prot is a curated protein database with a high level of annotation and a minimal level of redundancy, and TrEMBL is a computer-annotated supplement of Swiss-Prot that contains all the translations of EMBL nucleotide sequence entries not yet integrated in Swiss-Prot.

 Homology of Prunus Contigs
 Number of Contigs  5041
 Number (%) of Contigs with a Match in Swiss-Prot Database
 Download Excel Spreadsheet
 3001 (59.5%)
 Number (%) of Contigs with a Match in TrEMBL Database
 Download Excel Spreadsheet
 4419 (87.6%)

 

 Homology of Prunus Singlets
 Number of Singlets  7862
 Number (%) of Singlets with a Match in Swiss-Prot Database
 Download Excel Spreadsheet
 2899 (36.9%)
 Number (%) of Singlets with a Match in TrEMBL Database
 Download Excel Spreadsheet
 2468 (31.4%)

 

The type and frequency of simple sequence repeats in this unigene assembly (v2) were determined using the CUGIssr.pl program. For these searches, SSRs are defined as dinucleotides repeated at least 5 times, trinucleotides repeated at least 4 times, tetranucleotides repeated at least 3 times, or pentanucleotides repeated at least 3 times.

 Sequence information
 Number of Sequences  40868
 Number of Sequences Having One Or More SSRs  8465
 Percentage of Sequences Having One Or More SSRs  20.7%
 Total Number of SSRs Found  11186
 Number of Motifs  385

 

Frequency of Motif Type
 
 Motif Length  Frequency  Percentage Frequency
 2bp  2937  26.3%
 3bp  6065  54.2%
 4bp  1741  15.6%
 5bp  443  4.0%

 

 

The type and frequency of single nucleotide polymorphisms in this unigene assembly (V2) were determined using the AutoSNP software package (Savage et al., 2005).

View autoSNP output:

 
 SNP Summary
 Number of Contigs  5047
 Number of SNPs  3776
 Consensus Size  4211138 bp
 SNP Frequency  0.09/100 bp
 Total Transistions  1838
 Total Transversions  1050
 Total Indels  888

 

Contact Details
 Name  Main, Dorrie
 Lab  Department of Horticulture
 Organization  Washington State University
 Address  45 Johnson Hall, Pullman, WA 99164
 Telephone  509-335-2774
 Fax  509-335-8690
 Email  dorrie@wsu.edu

 

No publications are currently available.

Sequence Files:
Blast Result Files:
Microsatellite Files:

 

Resource Titles: 
Whole genomes
Transcripts
SNP array
Resource Titles: 
Library Information
Homology
Microsatellite Analysis
eSNP Summary
Contact
Publication
Downloads

Many sequencing projects around the world are depositing ESTs from the genus Fragaria in the NCBI dbEST database. However, not all of these ESTs are of high quality. To filter, we crossmatched the public sequences against NCBI's UniVec database and used the BLAST sequence similarity algorithm to remove species-specific chloroplast, mitochondrial, tRNA, and rRNA sequences

To reduce redundancy and create longer transcripts we assembled these ESTs using the CAP3 1 program. For some sequences, we were able to obtain ... [more]

Resource Blocks: 
The Fragaria ESTs used for this assembly were downloaded on December 19th, 2005

 

 EST Libraries
 Number of ESTs available  9399
 # of Species  2
 # of Libraries  11
 # of Tissues  7
 # of Development Stages  6

 

View detailed chart of libraries.

 Species
 Fragaria vesca  4023
 Fragaria x ananassa  5376

 

Homology was determined using the BLASTx algorithm for the Fragaria Contigs and Singlets vs. the Swiss-Prot and TrEMBL databases. Only matches with an E-value of 1.0 e-9 or better were recorded as significant. Swiss-Prot is a curated protein database with a high level of annotation and a minimal level of redundancy, and TrEMBL is a computer-annotated supplement of Swiss-Prot that contains all the translations of EMBL nucleotide sequence entries not yet integrated in Swiss-Prot.

 Homology of Fragaria Contigs
 Number of Contigs  1372
 Number (%) of Contigs with a Match in Swiss-Prot Database
 Download Excel Spreadsheet
 676 (49.3%)
 Number (%) of Contigs with a Match in TrEMBL Database
 Download Excel Spreadsheet
 901 (65.7%)

 

 Homology of Fragaria Singlets
 Number of Singlets  4193
 Number (%) of Singlets with a Match in Swiss-Prot Database
 Download Excel Spreadsheet
 1298 (31.0%)
 Number (%) of Singlets with a Match in TrEMBL Database
 Download Excel Spreadsheet
 1241 (29.6%)

 

The type and frequency of simple sequence repeats in this unigene assembly (v2) were determined using the CUGIssr.pl program. For these searches, SSRs are defined as dinucleotides repeated at least 5 times, trinucleotides repeated at least 4 times, tetranucleotides repeated at least 3 times, or pentanucleotides repeated at least 3 times.

 Sequence information
 Number of Sequences  9213
 Number of Sequences Having One Or More SSRs  1462
 Percentage of Sequences Having One Or More SSRs  15.9%
 Total Number of SSRs Found  1835
 Number of Motifs  193

 

Frequency of Motif Type

 Motif Length  Frequency  Percentage Frequency
 2bp  647  35.3%
 3bp  836  45.6%
 4bp  279  15.2%
 5bp  73  4.0%

 

The type and frequency of single nucleotide polymorphisms in this unigene assembly (V2) were determined using the AutoSNP software package (Savage et al., 2005).

View autoSNP output:

 
 SNP Summary
 Number of Contigs  1372
 Number of SNPs  283
 Consensus Size  949734 bp
 SNP Frequency  0.03/100 bp
 Total Transistions  115
 Total Transversions  69
 Total Indels  99

 

Contact Details
 Name  Main, Dorrie
 Lab  Department of Horticulture
 Organization  Washington State University
 Address  45 Johnson Hall, Pullman, WA 99164
 Telephone  509-335-2774
 Fax  509-335-8690
 Email  dorrie@wsu.edu

 

No publications are currently available.

Sequence Files:
Blast Result Files:
Microsatellite Files:

 

Resource Titles: 
Library Information
Homology
Contig GO Terms
Microsatellite Analysis
eSNP Summary
Contact
Publication
Downloads

Many sequencing projects around the world are depositing ESTs from the genus Fragaria in the NCBI dbEST database. However, not all of these ESTs are of high quality. To filter, we crossmatched the public sequences against NCBI's UniVec database and used the BLAST sequence similarity algorithm to remove species-specific chloroplast, mitochondrial, tRNA, and rRNA sequences.

To reduce redundancy and create longer transcripts we assembled these ESTs using the CAP3 1 program. For some sequences, we were able to obtain the original trace files and incorporate the phred quality values for each base into the assembly.... [more]

Resource Blocks: 
The Fragaria ESTs used for this assembly were downloaded on June 14th, 2006

 

 EST Libraries
 Number of ESTs available  18729
 # of Species  2
 # of Libraries  12
 # of Tissues  6
 # of Development Stages  6

 

View detailed chart of libraries.

 Species
 Fragaria vesca  13453
 Fragaria x ananassa  5276

 

Homology was determined using the BLASTx algorithm for the Fragaria Contigs and Singlets vs. the Swiss-Prot and TrEMBL databases. Only matches with an E-value of 1.0 e-9 or better were recorded. Swiss-Prot is a curated protein database with a high level of annotation and a minimal level of redundancy, and TrEMBL is a computer-annotated supplement of Swiss-Prot that contains all the translations of TrEMBL nucleotide sequence entries not yet integrated in Swiss-Prot.

 Homology of Fragaria Contigs
 Number of Contigs  2939
 Number (%) of Contigs with a Match in Swiss-Prot Database
 Download Excel Spreadsheet
 1827 (62.2%)
 Number (%) of Contigs with a Match in TrEMBL Database
 Download Excel Spreadsheet
 2435 (82.9%)

 

 Homology of Fragaria Singlets
 Number of Singlets  7073
 Number (%) of Singlets with a Match in Swiss-Prot Database
 Download Excel Spreadsheet
 2732 (38.6%)
 Number (%) of Singlets with a Match in TrEMBL Database
 Download Excel Spreadsheet
 4561 (64.5%)

 

The GO Terms (www.geneontology.org) were determined by comparing the contigs against Swiss-Prot using BLAST. The Sprot2GO annotation file was then used to map go terms to the sequences using relevant matches (1e-9).

883 Contigs have Biological Process annotation:

1044 Contigs have Cellular Component annotation:

1252 Contigs have Molecular Function annotation:

 

The type and frequency of simple sequence repeats in this unigene assembly (v3) were determined using the CUGIssr.pl program. For these searches, SSRs are defined as dinucleotides repeated at least 5 times, trinucleotides repeated at least 4 times, tetranucleotides repeated at least 3 times, or pentanucleotides repeated at least 3 times.

 Sequence information
 Number of Sequences  18729
 Number of Sequences Having One Or More SSRs  3821
 Percentage of Sequences Having One Or More SSRs  20.4%
 Total Number of SSRs Found  4947
 Number of Motifs  284

 

Frequency of Motif Type

 Motif Length  Frequency  Percentage Frequency
 2bp  1602  32.4%
 3bp  2536  51.3%
 4bp  588  11.9%
 5bp  211  4.5%

 

The type and frequency of single nucleotide polymorphisms in this unigene assembly (V3) were determined using the AutoSNP software package (Savage et al., 2005).

View autoSNP output:

 
 SNP Summary
 Number of Contigs  2939
 Number of SNPs  342
 Consensus Size  2567433 bp
 SNP Frequency  0.01/100 bp
 Total Transistions  132
 Total Transversions  83
 Total Indels  127

 

Contact Details
 Name  Main, Dorrie
 Lab  Department of Horticulture
 Organization  Washington State University
 Address  45 Johnson Hall, Pullman, WA 99164
 Telephone  509-335-2774
 Fax  509-335-8690
 Email  dorrie@wsu.edu

 

No publications are currently available.

Resource Titles: 
Library Information
Homology
Contig GO Terms
Microsatellite Analysis
eSNP Summary
Contact
Publication
Downloads

Many sequencing projects around the world are depositing ESTs from Fragaria in the NCBI dbEST database. The Fragaria ESTs included in this assembly were downloaded on January 1, 2008. Not all of these ESTs are of high quality. To filter, we crossmatched the public sequences against NCBI's UniVec database and used the BLAST sequence similarity algorithm to remove species-specific chloroplast, mitochondrial, tRNA, and rRNA sequences.

To reduce redundancy and create longer transcripts we assembled these ESTs using the CAP3 1<... [more]

Resource Blocks: 
The Fragaria ESTs used for this assembly were downloaded on January 1st, 2008

 

 EST Libraries
 Number of ESTs available  50882
 # of Species  3
 # of Libraries  22
 # of Tissues  16
 # of Development Stages  8

 

View detailed chart of libraries.

 Species
 Fragaria vesca  42736
 Fragaria vesca subsp. vesca  2716
 Fragaria x ananassa  5430

 

Homology was determined using the BLASTx algorithm for the Fragaria Contigs and Singlets vs. the Swiss-Prot and TrEMBL databases. Only matches with an E-value of 1.0 e-6 or better were recorded. Swiss-Prot is a curated protein database with a high level of annotation and a minimal level of redundancy, and TrEMBL is a computer-annotated supplement of Swiss-Prot that contains all the translations of TrEMBL nucleotide sequence entries not yet integrated in Swiss-Prot.

 Homology of Fragaria Contigs
 Number of Contigs  5582
 Number (%) of Contigs with a Match in Swiss-Prot Database
 Download Excel Spreadsheet
 4089 (73.3%)
 Number (%) of Contigs with a Match in TrEMBL Database
 Download Excel Spreadsheet
 5100 (91.4%)

 

 Homology of Fragaria Singlets
 Number of Singlets  8314
 Number (%) of Singlets with a Match in Swiss-Prot Database
 Download Excel Spreadsheet
 4092 (49.2%)
 Number (%) of Singlets with a Match in TrEMBL Database
 Download Excel Spreadsheet
 5986 (72.0%)

 

The GO Terms (www.geneontology.org) were determined by comparing the contigs against Swiss-Prot using BLAST. The Sprot2GO annotation file was then used to map go terms to the sequences using relevant matches (1e-9).

The type and frequency of simple sequence repeats in this unigene assembly (V4) were determined using the CUGIssr.pl program.For these searches, SSRs are defined as dinucleotides repeated at least 5 times, trinucleotides repeated at least 4 times, tetranucleotides repeated at least 3 times, or pentanucleotides repeated at least 3 times.

 Sequence information
 Number of Sequences  49132
 Number of Sequences Having One Or More SSRs  9460
 Percentage of Sequences Having One Or More SSRs  19.3%
 Total Number of SSRs Found  12105
 Number of Motifs  333

 

Frequency of Motif Type
 
 Motif Length  Frequency  Percentage Frequency
 2bp  3345  27.6%
 3bp  6628  54.8%
 4bp  1513  12.5%
 5bp  619  5.1%

 

 

The type and frequency of single nucleotide polymorphisms in this unigene assembly (V4) were determined using the AutoSNP software package (Savage et al., 2005).

View autoSNP output:

 
 SNP Summary
 Number of Contigs  5582
 Number of SNPs  623
 Consensus Size  5420231 bp
 SNP Frequency  0.01/100 bp
 Total Transistions  252
 Total Transversions  137
 Total Indels  234

 

Contact Details
 Name  Main, Dorrie
 Lab  Department of Horticulture
 Organization  Washington State University
 Address  45 Johnson Hall, Pullman, WA 99164
 Telephone  509-335-2774
 Fax  509-335-8690
 Email  dorrie@wsu.edu

 

No publications are currently available.

The Malus x domestica genome v1.0  pseudo haplotype assemblies are a set of four different assemblies (primary and alternates 1, 2 and 3)  derived from the contigs of the original v1.0 assembly.  These pseudo haplotypes are intended to divde overlapping contigs in the original assembly into four different consensus sequences representing the four different haplotypes present in the apple genome.  However, these assemblies are not true haplotypes, hence the name "pseudo haplotypes".  Currently, only the primary pseudo haplotype assembly is available on GDR.  Gaps of 200,000 N's were used to space scaffolds... [more]

Resource Titles: 
Assembly
Gene Predictions
Repeats
Downloads
Resource Blocks: 

Assembly files for the Malus x domestica genome v1.0 pseudo haplotypes are available in both GFF and FASTA format below.

For more information on the files available below, please see the description provided on the psuedo hapolotype assembly details page.

Downloads

Primary haplotype pseudomolecules (FASTA file) Malus_x_domestica.v1.0-primary.pseudo.fa.gz
Primary haplotype pseudomolecules (GFF file) Malus_x_domestica.v1.0-primary.pseudo.gff3.gz
Primary haplotype scaffold alignments (GFF file) Malus_x_domestica.v1.0-primary.scaffolds.gff3.gz
Primary haplotype scaffold sequences (FASTA file) Malus_x_domestica.v1.0-primary.scaffolds.fa.gz
Primary haplotype contig alignments (GFF file) Malus_x_domestica.v1.0-primary.contigs.gff3.gz
Repeat Masked pseudomolecules (FASTA file) Malus_x_domestica.v1.0-primary_masked.fa.gz

 

The gene predictions for the pseudo haplotype assemblies are the same consensus set from the original assembly, but have been mapped to the pseudomolecules of the haplotypes.

5' and 3' UTR regions are currently not available for gene models

Downloads

Consensus gene model CDSs (FASTA) Malus_x_domestica.v1.0-primary.CDS.fa.gz
Consensus gene model proteins (FASTA) Malus_x_domestica.v1.0-primary.protein.fa.gz
Consensus gene model mRNA (FASTA) Malus_x_domestica.v1.0-primary.mRNA.fa.gz
Consensus gene models (transcripts) (GFF3) Malus_x_domestica.v1.0-primary.transcripts.gff3.gz

 

Repeats were predicted for the original v1.0 combined assembly using read depth information from the genome assembly contigs.  The FASTA file of repeats was then used as a repeat library for RepeatMasker which was used to predict repeats on the v1.0 primary haplotype assembly.

Downloads

Predicted repeats aligned to chromosomes (GFF file) Malus_x_domestica.v1.0-primary.repeats.gff3.gz
Predicted repeats aligned to chromsomes (FASTA file) Malus_x_domestica.v1.0-primary.repeats.fa.gz

 

All assembly and annotation files are available for download by selecting the desired data type in the right-hand "Resources" side bar.  Each data type page will provide a description of the available files and links do download.

Resource Titles: 
Library Information
Homology
Microsatellite Analysis
eSNP Summary
Contact
Publication
Downloads

Many sequencing projects around the world are depositing ESTs from the genus Malus in the NCBI dbEST database. However, not all of these ESTs are of high quality. To filter, we crossmatched the public sequences against NCBI's UniVec database and used the BLAST sequence similarity algorithm to remove species-specific chloroplast, mitochondrial, tRNA, and rRNA sequences

To reduce redundancy and create longer transcripts we assembled these ESTs using the CAP3 1 program. For some sequences, we were able to obtain the o... [more]

Resource Blocks: 
The Malus ESTs used for this assembly were downloaded on December 19th, 2005

 

 EST Libraries
 Number of ESTs available  202,888
 # of Species  3
 # of Libraries  89
 # of Tissues  41
 # of Development Stages  31

View detailed chart of libraries.

 Species
 Malus sieboldii  1,163
 Malus x domestica  197,781
 Malus x domestica x Malus sieversii  3,944
 

 

Homology was determined using the BLASTx algorithm for the Malus Contigs and Singlets vs. the Swiss-Prot and TrEMBL databases. Only matches with an E-value of 1.0 e-9 or better were recorded as significant. Swiss-Prot is a curated protein database with a high level of annotation and a minimal level of redundancy, and TrEMBL is a computer-annotated supplement of Swiss-Prot that contains all the translations of EMBL nucleotide sequence entries not yet integrated in Swiss-Prot.

 Homology of Malus Contigs
 Number of Contigs  22,435
 Number (%) of Contigs with a Match in Swiss-Prot Database
Download Excel Spreadsheet
 12,401 (55.3%)
 Number (%) of Contigs with a Match in TrEMBL Database
 Download Excel Spreadsheet
 19,316 (86.1%)

 

 Homology of Malus Singlets
 Number of Singlets  45,556
 Number (%) of Singlets with a Match in Swiss-Prot Database
Download Excel Spreadsheet
 14,698 (32.3%)
 Number (%) of Singlets with a Match in TrEMBL Database
 Download Excel Spreadsheet
 20,673 (45.4%)
 

 

The type and frequency of simple sequence repeats in this unigene assembly (v2) were determined using the CUGIssr.pl program. For these searches, SSRs are defined as dinucleotides repeated at least 5 times, trinucleotides repeated at least 4 times, tetranucleotides repeated at least 3 times, or pentanucleotides repeated at least 3 times.

 

 Sequence information
 Number of Sequences  195553
 Number of Sequences Having One Or More SSRs  35504
 Percentage of Sequences Having One Or More SSRs  18.2%
 Total Number of SSRs Found  44472
 Number of Motifs  636

 

Frequency of Motif Type

 

 Motif Length  Frequency  Percentage Frequency
 2bp  20647  42.4%
 3bp  16846  37.9%
 4bp  5562  12.5%
 5bp  1417  3.2%
 

 

The type and frequency of single nucleotide polymorphisms in this unigene assembly (V2) were determined using the AutoSNP software package (Savage et al., 2005).

View autoSNP output:

 

 SNP Summary
 Number of Contigs  22,435
 Number of SNPs  10,426
 Consensus Size  19,101,680 bp
 SNP Frequency  0.05/100 bp
 Total Transistions  4,759
 Total Transversions  2,732
 Total Indels  2,935
 

 

 Contact Details
 Name  Main, Dorrie
 Lab  Department of Horticulture
 Organization  Washington State University
 Address  45 Johnson Hall, Pullman, WA 99164
 Telephone  509-335-2774
 Fax  509-335-8690
 Email  dorrie@wsu.edu

 

No publications are currently available.

Sequence Files:
Blast Result Files:
Microsatellite Files:

 

Resource Titles: 
Library Information
Homology
Contig GO Terms
Microsatellite Analysis
eSNP Summary
Contact
Publication
Download

Many sequencing projects around the world are depositing ESTs from the genus Malus in the NCBI dbEST database. All the Malus ESTs from GenBank on July 14, 2006 were included in this assembly. However, not all of these ESTs are of high quality. To filter, we crossmatched the public sequences against NCBI's UniVec database and used the BLAST sequence similarity algorithm to remove species-specific chloroplast, mitochondrial, tRNA, and rRNA sequences.

To reduce redundancy and create longer transcripts we assembled these ESTs using the CAP3 1 program. The parameters used for CAP... [more]

Resource Blocks: 
The Malus ESTs used for this assembly were downloaded on June 14th, 2006

 

 EST Libraries
 Number of ESTs available  250907
 # of Species  4
 # of Libraries  97
 # of Tissues  18
 # of Development Stages  33

View detailed chart of libraries.

 Species
 Malus hybrid rootstock  320
 Malus sieboldii  1126
 Malus x domestica  245545
 Malus x domestica x Malus sieversii  3916
 

 

Homology was determined using the BLASTx algorithm for the Malus Contigs and Singlets vs. the Swiss-Prot and TrEMBL databases. Only matches with an E-value of 1.0 e-9 or better were recorded. Swiss-Prot is a curated protein database with a high level of annotation and a minimal level of redundancy, and TrEMBL is a computer-annotated supplement of Swiss-Prot that contains all the translations of TrEMBL nucleotide sequence entries not yet integrated in Swiss-Prot.

 Homology of Malus Contigs
 Number of Contigs  23868
 Number (%) of Contigs with a Match in Swiss-Prot Database
 View as HTML | Download Excel Spreadsheet | Search
 13340 (55.9%)
 Number (%) of Contigs with a Match in TrEMBL Database
 Download Excel Spreadsheet
 20564 (86.2%)

 

 Homology of Malus Singlets
 Number of Singlets  58982
 Number (%) of Singlets with a Match in Swiss-Prot Database
 Download Excel Spreadsheet
 21842 (37.0%)
 Number (%) of Singlets with a Match in TrEMBL Database
 View as HTML | Download Excel Spreadsheet | Search
 37101 (62.9%)
 

 

The GO Terms (www.geneontology.org) were determined by comparing the contigs against Swiss-Prot using BLAST. The Sprot2GO annotation file was then used to map go terms to the sequences using relevant matches (1e-9).

 

6492 Contigs have Biological Process annotation:
 

7570 Contigs have Cellular Component annotation:
 

9322 Contigs have Molecular Function annotation:
 

 

 


 

GO Term Serach

 

GO:          

 

 

 

The type and frequency of simple sequence repeats in this unigene assembly (v3) were determined using the CUGIssr.pl program. For these searches, SSRs are defined as dinucleotides repeated at least 5 times, trinucleotides repeated at least 4 times, tetranucleotides repeated at least 3 times, or pentanucleotides repeated at least 3 times.

 

 Sequence information
 Number of Sequences  250907
 Number of Sequences Having One Or More SSRs  46663
 Percentage of Sequences Having One Or More SSRs  18.6%
 Total Number of SSRs Found  58319
 Number of Motifs  657

 

Frequency of Motif Type

 

 Motif Length  Frequency  Percentage Frequency
 2bp  27350  46.9%
 3bp  21818  37.4%
 4bp  7437  12.8%
 5bp  1714  2.9%
 

 

The type and frequency of single nucleotide polymorphisms in this unigene assembly (V3) were determined using the AutoSNP software package (Savage et al., 2005).

View autoSNP output:

 

 SNP Summary
 Number of Contigs  23868
 Number of SNPs  14298
 Consensus Size  20360530 bp
 SNP Frequency  0.07/100 bp
 Total Transistions  7060
 Total Transversions  3836
 Total Indels  3402
 

 

 Contact Details
 Name  Main, Dorrie
 Lab  Department of Horticulture
 Organization  Washington State University
 Address  45 Johnson Hall, Pullman, WA 99164
 Telephone  509-335-2774
 Fax  509-335-8690
 Email  dorrie@wsu.edu

 

No publications are currently available.

Sequence Files:
Blast Result Files:
Microsatellite Files: