The genome of the domesticated apple (Malus x domestica Borkh.)

Publication Overview
TitleThe genome of the domesticated apple (Malus x domestica Borkh.)
AuthorsVelasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R
TypeJournal Article
Journal NameNature Genetics
Volume42
Issue10
Year2010
Page(s)833-839
CitationVelasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.

Abstract

We report a high-quality draft genome sequence of the domesticated apple (Malus × domestica). We show that a relatively recent (>50 million years ago) genome-wide duplication (GWD) has resulted in the transition from nine ancestral chromosomes to 17 chromosomes in the Pyreae. Traces of older GWDs partly support the monophyly of the ancestral paleohexaploidy of eudicots. Phylogenetic reconstruction of Pyreae and the genus Malus, relative to major Rosaceae taxa, identified the progenitor of the cultivated apple as M. sieversii. Expansion of gene families reported to be involved in fruit development may explain formation of the pome, a Pyreae-specific false fruit that develops by proliferation of the basal part of the sepals, the receptacle. In apple, a subclade of MADS-box genes, normally involved in flower and fruit development, is expanded to include 15 members, as are other gene families involved in Rosaceae-specific metabolism, such as transport and assimilation of sorbitol.

Features
This publication contains information about 1,769 features:
Feature NameUniquenameType
GDsnp00478GDsnp00478genetic_marker
GDsnp01349GDsnp01349genetic_marker
GDsnp01934GDsnp01934genetic_marker
GDsnp00120GDsnp00120genetic_marker
GDsnp00267GDsnp00267genetic_marker
GDsnp00624GDsnp00624genetic_marker
GDsnp02061GDsnp02061genetic_marker
GDsnp01868GDsnp01868genetic_marker
GDsnp00973GDsnp00973genetic_marker
GDsnp10007GDsnp10007genetic_marker
GDsnp01532GDsnp01532genetic_marker
GDsnp00019GDsnp00019genetic_marker
GDsnp00669GDsnp00669genetic_marker
GDsnp01322GDsnp01322genetic_marker
GDsnp00914GDsnp00914genetic_marker
GDsnp00995GDsnp00995genetic_marker
GDsnp00471GDsnp00471genetic_marker
GDsnp01938GDsnp01938genetic_marker
GDsnp00167GDsnp00167genetic_marker
GDsnp02535GDsnp02535genetic_marker
GDsnp00242GDsnp00242genetic_marker
GDsnp00506GDsnp00506genetic_marker
GDsnp00866GDsnp00866genetic_marker
GDsnp00754GDsnp00754genetic_marker
GDsnp00480GDsnp00480genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Apple Integrated map