GAPDHB, JQ302965.1-GAPDHB.m1 (mRNA) Pyrus x bretschneideri

Transcript Overview


Name	GAPDHB
Unique Name	JQ302965.1-GAPDHB.m1
Type	mRNA
Organism	Pyrus x bretschneideri ()
Source	genbank
Product	glyceraldehyde-3-phosphate dehydrogenase B

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
JQ302965.1-GAPDHB.m1-cds1	JQ302965.1-GAPDHB.m1-cds1	Pyrus x bretschneideri	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
GAPDHB	JQ302965.1-GAPDHB.p1	Pyrus x bretschneideri	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	381393062
nuccore	JQ302965.1

Alignments

Feature Name	Type	Location	Analysis
JQ302965	region	JQ302965:18..1376+	NCBI Rosaceae gene and mRNA sequences
scaffold00605	supercontig	scaffold00605:82069..84677-	Pyrus communis Genome v1.0 Draft Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at JQ302965:18..1376+
coding sequence from alignment at JQ302965:18..1376+

mRNA sequence

>JQ302965.1-GAPDHB.m1 ID=JQ302965.1-GAPDHB.m1; Name=GAPDHB; organism=Pyrus x bretschneideri; type=mRNA; length=1359bp
atggcctcacacgcagctctcgcctcttcgcgagtcccggctaacaccag
gcttccctccaagccctcccactcatttcccacccaatgcttctccaaga
ggcttgaagttggtgagttttcaggactaagatcgagttcatgtgtgacc
tatgcaagcaatggcagagagcaatccttcttcgatactgtcgctgccca
gcttactcccaagactgcaggaccaactcctgtcaggggagaaacagtgg
caaaattgaaggtggcaatcaacggatttggacgtattggcagaaacttc
ctccgatgctggcatggccgcaaggactcacccctcgaagtcattgttgt
taatgacagtggtggtgtcaagaatgcttcacacttgctgaaatacgact
caatgctgggtactttcaaagcagatgtgaaaatcgttgacaatgagacc
atcagcgttgatggtaagcccgtcaaggttgtctctagcagagatcccct
gaagcttccatgggctgagatgggcattgacattgttatcgagggaacag
gagtctttgtcgatggccctggtgccggcaaacatatccaagccggtgcc
aagaaagtcatcattacagctccagcaaaaggtgctgacattcctacaca
tgttgtcggggtgaatgaaaaagactacggccacgacgttgccaacattg
taagcaatgcttcttgcaccacaaactgcctggctcctttcgtaaagatc
ctggatgaagaatttggcattgtcaagggaaccatgacaactactcattc
ctacactggagaccagaggctcttggacgcttcacaccgggacttaagga
gagccagagcggcagcactaaacatagtccccacaagcactggtgcagca
aaggctgtgtcccttgtgctgcctcaactcaaaggcaagctcaacggcat
tgccctccgtgtgccaacacctaacgtatcagtggttgaccttgtgatca
acgttgcaaagaaaggtatttcagcagaagatgtcaatgcagccttcaga
aaggcagcggacggaccacttaagggcatattggcagtgtgcgacgttcc
tcttgtgtctgtggacttcaggtgcactgatgtttcctccaccatagact
cctccttgaccatggtcatgggtgatgatatggtcaaggtggtggcctgg
tacgacaacgaatggggatacagccaaagggttgtggatttggcacattt
ggttgcaagcaagtggccaggcgcggcagtagtgggaagcggagacccat
tggaggatttctgccagacaaacccggcagacgaggagtgcaaagtctat
gaagcatag

protein sequence of GAPDHB

>JQ302965.1-GAPDHB.p1 ID=JQ302965.1-GAPDHB.p1; Name=GAPDHB; organism=Pyrus x bretschneideri; type=polypeptide; length=452bp
MASHAALASSRVPANTRLPSKPSHSFPTQCFSKRLEVGEFSGLRSSSCVT
YASNGREQSFFDTVAAQLTPKTAGPTPVRGETVAKLKVAINGFGRIGRNF
LRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNET
ISVDGKPVKVVSSRDPLKLPWAEMGIDIVIEGTGVFVDGPGAGKHIQAGA
KKVIITAPAKGADIPTHVVGVNEKDYGHDVANIVSNASCTTNCLAPFVKI
LDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAA
KAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVAKKGISAEDVNAAFR
KAADGPLKGILAVCDVPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAW
YDNEWGYSQRVVDLAHLVASKWPGAAVVGSGDPLEDFCQTNPADEECKVY
EA

mRNA from alignment at JQ302965:18..1376+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>JQ302965.1-GAPDHB.m1 ID=JQ302965.1-GAPDHB.m1; Name=GAPDHB; organism=Pyrus x bretschneideri; type=mRNA; length=1359bp; location=Sequence derived from: JQ302965:18..1376+ (Pyrus x bretschneideri
atggcctcacacgcagctctcgcctcttcgcgagtcccggctaacaccag
gcttccctccaagccctcccactcatttcccacccaatgcttctccaaga
ggcttgaagttggtgagttttcaggactaagatcgagttcatgtgtgacc
tatgcaagcaatggcagagagcaatccttcttcgatactgtcgctgccca
gcttactcccaagactgcaggaccaactcctgtcaggggagaaacagtgg
caaaattgaaggtggcaatcaacggatttggacgtattggcagaaacttc
ctccgatgctggcatggccgcaaggactcacccctcgaagtcattgttgt
taatgacagtggtggtgtcaagaatgcttcacacttgctgaaatacgact
caatgctgggtactttcaaagcagatgtgaaaatcgttgacaatgagacc
atcagcgttgatggtaagcccgtcaaggttgtctctagcagagatcccct
gaagcttccatgggctgagatgggcattgacattgttatcgagggaacag
gagtctttgtcgatggccctggtgccggcaaacatatccaagccggtgcc
aagaaagtcatcattacagctccagcaaaaggtgctgacattcctacaca
tgttgtcggggtgaatgaaaaagactacggccacgacgttgccaacattg
taagcaatgcttcttgcaccacaaactgcctggctcctttcgtaaagatc
ctggatgaagaatttggcattgtcaagggaaccatgacaactactcattc
ctacactggagaccagaggctcttggacgcttcacaccgggacttaagga
gagccagagcggcagcactaaacatagtccccacaagcactggtgcagca
aaggctgtgtcccttgtgctgcctcaactcaaaggcaagctcaacggcat
tgccctccgtgtgccaacacctaacgtatcagtggttgaccttgtgatca
acgttgcaaagaaaggtatttcagcagaagatgtcaatgcagccttcaga
aaggcagcggacggaccacttaagggcatattggcagtgtgcgacgttcc
tcttgtgtctgtggacttcaggtgcactgatgtttcctccaccatagact
cctccttgaccatggtcatgggtgatgatatggtcaaggtggtggcctgg
tacgacaacgaatggggatacagccaaagggttgtggatttggcacattt
ggttgcaagcaagtggccaggcgcggcagtagtgggaagcggagacccat
tggaggatttctgccagacaaacccggcagacgaggagtgcaaagtctat
gaagcatag

Coding sequence (CDS) from alignment at JQ302965:18..1376+

>JQ302965.1-GAPDHB.m1 ID=JQ302965.1-GAPDHB.m1; Name=GAPDHB; organism=Pyrus x bretschneideri; type=CDS; length=1359bp; location=Sequence derived from: JQ302965:18..1376+ (Pyrus x bretschneideri
atggcctcacacgcagctctcgcctcttcgcgagtcccggctaacaccag
gcttccctccaagccctcccactcatttcccacccaatgcttctccaaga
ggcttgaagttggtgagttttcaggactaagatcgagttcatgtgtgacc
tatgcaagcaatggcagagagcaatccttcttcgatactgtcgctgccca
gcttactcccaagactgcaggaccaactcctgtcaggggagaaacagtgg
caaaattgaaggtggcaatcaacggatttggacgtattggcagaaacttc
ctccgatgctggcatggccgcaaggactcacccctcgaagtcattgttgt
taatgacagtggtggtgtcaagaatgcttcacacttgctgaaatacgact
caatgctgggtactttcaaagcagatgtgaaaatcgttgacaatgagacc
atcagcgttgatggtaagcccgtcaaggttgtctctagcagagatcccct
gaagcttccatgggctgagatgggcattgacattgttatcgagggaacag
gagtctttgtcgatggccctggtgccggcaaacatatccaagccggtgcc
aagaaagtcatcattacagctccagcaaaaggtgctgacattcctacaca
tgttgtcggggtgaatgaaaaagactacggccacgacgttgccaacattg
taagcaatgcttcttgcaccacaaactgcctggctcctttcgtaaagatc
ctggatgaagaatttggcattgtcaagggaaccatgacaactactcattc
ctacactggagaccagaggctcttggacgcttcacaccgggacttaagga
gagccagagcggcagcactaaacatagtccccacaagcactggtgcagca
aaggctgtgtcccttgtgctgcctcaactcaaaggcaagctcaacggcat
tgccctccgtgtgccaacacctaacgtatcagtggttgaccttgtgatca
acgttgcaaagaaaggtatttcagcagaagatgtcaatgcagccttcaga
aaggcagcggacggaccacttaagggcatattggcagtgtgcgacgttcc
tcttgtgtctgtggacttcaggtgcactgatgtttcctccaccatagact
cctccttgaccatggtcatgggtgatgatatggtcaaggtggtggcctgg
tacgacaacgaatggggatacagccaaagggttgtggatttggcacattt
ggttgcaagcaagtggccaggcgcggcagtagtgggaagcggagacccat
tggaggatttctgccagacaaacccggcagacgaggagtgcaaagtctat
gaagcatag