==================================================
file name: Pyrus_communis_genome_scaffolds.fasta
sequences:        142083
total length:  577335413 bp  (507689935 bp excl N/X-runs)
GC level:         37.33 %
bases masked:  195031258 bp ( 33.78 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
Retroelements       241316    149344780 bp   25.87 %
   SINEs:            20442      2865440 bp    0.50 %
   Penelope              0            0 bp    0.00 %
   LINEs:            14520      6024864 bp    1.04 %
    CRE/SLACS            0            0 bp    0.00 %
     L2/CR1/Rex          0            0 bp    0.00 %
     R1/LOA/Jockey       0            0 bp    0.00 %
     R2/R4/NeSL          0            0 bp    0.00 %
     RTE/Bov-B        6669      1724407 bp    0.30 %
     L1/CIN4          7851      4300457 bp    0.74 %
   LTR elements:    206354    140454476 bp   24.33 %
     BEL/Pao             0            0 bp    0.00 %
     Ty1/Copia       56724     44239531 bp    7.66 %
     Gypsy/DIRS1    114127     85382462 bp   14.79 %
       Retroviral        0            0 bp    0.00 %

DNA transposons     173387     42057677 bp    7.28 %
   hobo-Activator    36417     10006751 bp    1.73 %
   Tc1-IS630-Pogo      107        14529 bp    0.00 %
   En-Spm              296       277590 bp    0.05 %
   MuDR-IS905            0            0 bp    0.00 %
   PiggyBac              0            0 bp    0.00 %
   Tourist/Harbinger 30859      9770259 bp    1.69 %
   Other (Mirage,        0            0 bp    0.00 %
    P-element, Transib)

Rolling-circles          0            0 bp    0.00 %

Unclassified:        11995      3427479 bp    0.59 %

Total interspersed repeats:   194829936 bp   33.75 %


Small RNA:           20415      2872800 bp    0.50 %

Satellites:            186        31540 bp    0.01 %
Simple repeats:       2497       213890 bp    0.04 %
Low complexity:        226        20542 bp    0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element
                                                      

The query species was assumed to be rosids        
RepeatMasker version open-4.0.3 , sensitive mode
                                 
run with rmblastn version 2.2.27+
RepBase Update 20120418, RM database version 20120418