CPPCT008, CPPCT008 (genetic_marker) Prunus persica

Marker Overview


Name	CPPCT008
Genbank ID	N/A
Type	SSR
Species	Prunus persica
Source Type	Genomic DNA
Repeat Motif	(CT)6..(CT)7
PCR Condition	94 C 1 min, 94 C 30 sec, 59 C 30 sec, 72 C 1 min. 34 cycles, 72 C 5min
Primer 1	CPPCT008.Forward Primer: GAGCTCTCACGCATTAGTTTTTTGACTGCATAACAAAACG
Primer 2	CPPCT008.primer 1: GAGCTCTCACGCATTAGTTTTTTGACTGCATAACAAAACG
Product Length	161
Publication	[view all]
Contact	E. Dirlewanger Maria Badenes
Associated With	GWAS0001932

Contact

Name

Details

E. Dirlewanger

First name:	Elisabeth
Last name:	Dirlewanger
Institution:	INRA
Address:	Unite de Recherche sur les Especes Fruitieres et la Vigne, Centre de Bordeaux, BP 81, 33883 Villenave d Ornon cedex, France
Country:	France
Email:	dirlewan@bordeaux.inra.fr

Maria Badenes

First name:	Maria
Last name:	Badenes
Institution:	Instituto Valenciano de Investigaciones Agrarias (IVIA)
Address:	Instituto Valenciano de Investigaciones Agrarias, Apartado Oficial 46113 Moncada, Valencia, Spain
Country:	Spain
Email:	badenes_mlu@gva.es

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_6	supercontig	scaffold_6:489850..490263 .	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a
Pp06	chromosome	Pp06:4382821..4383234 +	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
GDR Markers Database	2004-01-01
Alignment of genetic markers to Prunus persics v2.0	2019-04-11

Publications


Year	Publication
2002	Plant breeding = Zeitschrift fr Pflanzenzchtung. Plant breed. Feb 2002. v. 121 (1) p. 87-92. ISSN 0179-9541; PLABED
2002	Dirlewanger E, Cosson P, Tavaud M, Aranzana J, Poizat C, Zanetto A, Arús P, Laigret F. Development of microsatellite markers in peach [ Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry ( Prunus avium L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2002 Jul; 105(1):127-138.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Almond-RD-F1	G6	N/A	0	CPPCT008	View
2	Prunus-TE-F2	G6	N/A	8.7	CPPCT008	View
3	Almond-NL-F1-2010	G6	N/A	8.96	CPPCT008	View
4	Peach-LAxFG-F2	LG6	N/A	0	CPPCT008	View
5	Peach-DvsS-BC2	LG6	N/A	9	CPPCT008	View
6	Prunus-TxE-peachV2.0	LG6	N/A	8.7	CPPCT008	View
7	Sweet Cherry-C-309xC-195-50-F1	Pa6	N/A	5.53	CPPCT008	View
8	Sweet Cherry-PAV_r1.0_consensus_map-F1	Pa6	N/A	32.59	CPPCT008	View
9	Apricot-LB-F1	L6	N/A	0	CPPCT08	View
10	Chokecherry-RCxSC-F1-2014	RC VIa	N/A	62.7	CPPCT08	View
11	Chokecherry-RCxSC-F1-2017	Cho-6	N/A	38.88	CPPCT08	View

Annotated Terms

The following terms have been associated with this genetic_marker:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
28:fruit fresh weight	fruit fresh weight