Canker-HB5

Haplotype Block Overview

Name	Canker-HB5
Species	Malus x domestica
Stock Haplotype	[view all 1]
Haplotype	[view all]

Publications


Year	Publication
2022	Karlström A, Gómez-Cortecero A, Nellist CF, Ordidge M, Dunwell JM, Harrison RJ. Identification of novel genetic regions associated with resistance to European canker in apple.. BMC plant biology. 2022 Sep 21; 22(1):452.

Stock Haplotype

Name	Haplotype
Golden Delicious	hb5-gd-r hb5-shared-s

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Canker-HB5	Apple-consensus-Allard-2016	LG5	28	43

Projects


Project Name
Apple-canker-Karlstrom-Haplotype-2020

Haplotypes

Marker	hb5-aroma-r	hb5-aroma-s	hb5-gd-r	hb5-sel3-r	hb5-shared-s
GDsnp00323	A	A	A	A	G
GDsnp00867	A	C	C	C	A
GDsnp00978	C	C	C	C	A
GDsnp01319	A	A	A	A	G
GDsnp01478	G	G	G	A	A
GDsnp02809	A	A	A	A	G
RosBREEDSNP_SNP_AC_12016362_Lg5_01319_MAF30_MDP0000224750_exon1	C	A	A	C	A
RosBREEDSNP_SNP_AG_11445563_Lg5_RosCOS1953_MAF50_MDP0000204582_exon4	G	G	A	G	A
RosBREEDSNP_SNP_AG_18043587_Lg5_MDP0000580952_MAF20_MDP0000580952_exon7	A	A	A	A	A
RosBREEDSNP_SNP_CT_11970050_Lg5_01319_MAF40_MDP0000594281_exon1	A	A	A	A	G
RosBREEDSNP_SNP_CT_19577005_Lg5_01478_MAF50_1664633_exon1	G	G	G	G	G
RosBREEDSNP_SNP_GA_11403959_Lg5_RosCOS1953_MAF20_MDP0000216403_exon1	A	A	A	A	G
RosBREEDSNP_SNP_GA_18579919_Lg5_00323_MAF30_MDP0000291499_exon1	A	G	G	G	G
RosBREEDSNP_SNP_GA_19699729_Lg5_00867_MAF40_1675010_exon4	G	G	G	G	G
RosBREEDSNP_SNP_GT_11479429_Lg5_RosCOS1953_MAF50_517811_exon4	C	A	C	A	C
RosBREEDSNP_SNP_TC_11985564_Lg5_01319_MAF20_MDP0000661779_exon1	G	G	G	G	A
RosBREEDSNP_SNP_TC_19493983_Lg5_01478_MAF40_MDP0000141888_exon1	G	A	A	A	A
RosBREEDSNP_SNP_TC_19678308_Lg5_00867_MAF30_980776_exon1	A	A	A	A	A
RosBREEDSNP_SNP_TG_13685952_Lg5_00978_MAF40_1618624_exon1	C	A	C	A	A
SNP_FB_0323092	G	A	A	A	A
SNP_FB_0323102	A	G	G	G	A
SNP_FB_0323103	A	A	A	G	A
SNP_FB_0462931	A	A	A	G	A
SNP_FB_0462933	A	A	A	A	G
SNP_FB_0462945	G	A	G	A	A
SNP_FB_0609815	A	A	A	A	C
SNP_FB_0610487	A	A	A	A	G
SNP_FB_0610493	G	G	A	G	A
SNP_FB_0610499	A	A	C	A	C
SNP_FB_0611405	A	A	A	A	G
SNP_FB_0611411	G	G	G	G	A
SNP_FB_0611417	G	G	G	G	A
SNP_FB_0611418	G	G	G	G	A
SNP_FB_0611422	G	G	G	G	A
SNP_FB_0611434	A	A	A	A	G
SNP_FB_0612624	G	G	G	A	A
SNP_FB_0613612	A	G	A	G	A
SNP_FB_0616690	G	G	G	G	A
SNP_FB_0616698	A	A	A	A	G
SNP_FB_0616714	G	G	G	A	G
SNP_FB_0617605	A	G	A	G	G
SNP_FB_0617608	G	G	A	A	G
SNP_FB_0617610	A	A	A	G	A
SNP_FB_0617611	A	A	A	A	A
SNP_FB_0618472	A	A	A	A	A
SNP_FB_0618990	A	A	A	A	A
SNP_FB_0618997	G	G	G	A	A
SNP_FB_0619002	G	G	G	G	G
SNP_FB_0619019	G	A	A	G	G
SNP_FB_0619585	A	C	C	A	A
SNP_FB_0619601	A	G	G	A	G
SNP_FB_0619602	A	A	A	A	C
SNP_FB_0619609	A	G	G	G	G
SNP_FB_0620376	G	A	A	A	G
SNP_FB_0621430	A	G	G	A	A
SNP_FB_0621432	A	A	A	A	G
SNP_FB_0621436	A	A	A	G	G
SNP_FB_0621446	A	G	G	G	G
SNP_FB_0621455	A	C	C	C	A
SNP_FB_0622204	G	A	A	A	G
SNP_FB_0622222	A	A	A	A	G
SNP_FB_0629345	A	A	A	G	G
SNP_FB_0991819	G	G	A	G	G
SNP_FB_0991821	A	A	A	A	G
SNP_FB_0991822	A	A	A	A	A
SNP_FB_0991828	A	A	A	G	A
SNP_FB_0991829	A	A	A	A	G
SNP_FB_0992519	G	G	G	G	A
SNP_FB_0993439	G	G	A	A	G
SNP_FB_0995239	G	G	G	A	G
SNP_FB_0995242	C	A	A	A	C
SNP_FB_0995249	A	G	G	A	A
SNP_FB_0995817	G	G	G	G	A
SNP_FB_0995824	A	G	G	G	G
SNP_FB_1094221	A	G	A	A	G
SNP_FB_1094228	G	G	G	G	A
SNP_FB_1094449	A	G	A	G	G
SNP_FB_1095726	A	G	G	G	A

Alignments

Feature Name	Type	Location	Analysis
Chr05	chromosome	Chr05:29889122..37094392.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation

Annotated Terms

The following terms have been associated with this haplotype_block:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
28:resistance to Neonectria ditissima	resistance to Neonectria ditissima