SFB, HM347511.1-SFB.m1 (mRNA) Prunus speciosa

Transcript Overview
NameSFB
Unique NameHM347511.1-SFB.m1
TypemRNA
OrganismPrunus speciosa ()
Sourcegenbank
ProductS-haplotype-specific F-box protein
Genbank Noteassociated with self-incompatibility
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
HM347511regionHM347511:138..1262 +NCBI Rosaceae gene and mRNA sequencesn/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SFBHM347511.1-SFBPrunus speciosagene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
HM347511.1-SFB.m1-cds1HM347511.1-SFB.m1-cds1Prunus speciosaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
SFBHM347511.1-SFB.p1Prunus speciosapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI326535679
nuccoreHM347511.1
Sequences
The following sequences are available for this feature:

mRNA sequence

>HM347511.1-SFB.m1 ID=HM347511.1-SFB.m1; Name=SFB; organism=Prunus speciosa; type=mRNA; length=1125bp
atgacattcacactacgtaagaaagaaatcttaatcgacatcctagtaag
actacctgcaaaatccctcgttcggtttctttgtacatgcaagtcatgga
gtgatttgattggcagctccagttttgttagcacacaccttcgtaggaat
gtcacaaagaatacccatgtctatctactctgccttcatcacccgaattt
tgaacgtttggtcgaccccaatgacccatatgttaaaaaggaatatcagt
ggtctcttttttgcaatgagacatttgagcagtcctccaagttaagccat
cccttagggagcacagatcattatggaatatacggttcaagcaatggttt
agtttgcatttcggatgagatattgaatttcgatagtcctatacacatat
ggaacccatcagttaggaaacctaggacccctccaatcagcaccaacatt
aacattaaattttcctatgtttctctccaattcgggttccaccctggggt
taatgactacaaggctgttaggatgatgcgtaccaacaaaaatgccttgg
cggtggaggtttatagtcttagaacagactcttggaagatgattgaagca
attcctccttggttaaaatgcacttggcagcatcacaagggtacattttt
taacggagtagcatatcacctcattgagaaatatcctatattcagcattg
tgtcattcgattcaggcagtgaagaattcgaagaattcatagcaccagat
gccatttgcggtttattgggggtatgtattgacgtttacaaggaacaaat
ttgcttgattttcgactgttatccttgtgaggaggagggcatggacaaga
ttgacttatgggttctacaagaaaaacggtggaaacaattgtgccctttt
atttatccttcgggttatgagtatcgtacaatcgggattactatggataa
taaattcttaatgcaaaaagaagattacattgggggcatagtagatctgc
atttgtgtgattacgaatccaaggacgttcttgaaacaggaattaagttg
gccatcatgaaatatggcgaaattgaatttgtattttcaattacttgcgt
agaaagtttggttctactgaattaa
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protein sequence of SFB

>HM347511.1-SFB.p1 ID=HM347511.1-SFB.p1; Name=SFB; organism=Prunus speciosa; type=polypeptide; length=374bp
MTFTLRKKEILIDILVRLPAKSLVRFLCTCKSWSDLIGSSSFVSTHLRRN
VTKNTHVYLLCLHHPNFERLVDPNDPYVKKEYQWSLFCNETFEQSSKLSH
PLGSTDHYGIYGSSNGLVCISDEILNFDSPIHIWNPSVRKPRTPPISTNI
NIKFSYVSLQFGFHPGVNDYKAVRMMRTNKNALAVEVYSLRTDSWKMIEA
IPPWLKCTWQHHKGTFFNGVAYHLIEKYPIFSIVSFDSGSEEFEEFIAPD
AICGLLGVCIDVYKEQICLIFDCYPCEEEGMDKIDLWVLQEKRWKQLCPF
IYPSGYEYRTIGITMDNKFLMQKEDYIGGIVDLHLCDYESKDVLETGIKL
AIMKYGEIEFVFSITCVESLVLLN
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mRNA from alignment at HM347511:138..1262+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>HM347511.1-SFB.m1 ID=HM347511.1-SFB.m1; Name=SFB; organism=Prunus speciosa; type=mRNA; length=1125bp; location=Sequence derived from: HM347511:138..1262+ (Prunus speciosa
atgacattcacactacgtaagaaagaaatcttaatcgacatcctagtaag
actacctgcaaaatccctcgttcggtttctttgtacatgcaagtcatgga
gtgatttgattggcagctccagttttgttagcacacaccttcgtaggaat
gtcacaaagaatacccatgtctatctactctgccttcatcacccgaattt
tgaacgtttggtcgaccccaatgacccatatgttaaaaaggaatatcagt
ggtctcttttttgcaatgagacatttgagcagtcctccaagttaagccat
cccttagggagcacagatcattatggaatatacggttcaagcaatggttt
agtttgcatttcggatgagatattgaatttcgatagtcctatacacatat
ggaacccatcagttaggaaacctaggacccctccaatcagcaccaacatt
aacattaaattttcctatgtttctctccaattcgggttccaccctggggt
taatgactacaaggctgttaggatgatgcgtaccaacaaaaatgccttgg
cggtggaggtttatagtcttagaacagactcttggaagatgattgaagca
attcctccttggttaaaatgcacttggcagcatcacaagggtacattttt
taacggagtagcatatcacctcattgagaaatatcctatattcagcattg
tgtcattcgattcaggcagtgaagaattcgaagaattcatagcaccagat
gccatttgcggtttattgggggtatgtattgacgtttacaaggaacaaat
ttgcttgattttcgactgttatccttgtgaggaggagggcatggacaaga
ttgacttatgggttctacaagaaaaacggtggaaacaattgtgccctttt
atttatccttcgggttatgagtatcgtacaatcgggattactatggataa
taaattcttaatgcaaaaagaagattacattgggggcatagtagatctgc
atttgtgtgattacgaatccaaggacgttcttgaaacaggaattaagttg
gccatcatgaaatatggcgaaattgaatttgtattttcaattacttgcgt
agaaagtttggttctactgaattaa
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Coding sequence (CDS) from alignment at HM347511:138..1262+

>HM347511.1-SFB.m1 ID=HM347511.1-SFB.m1; Name=SFB; organism=Prunus speciosa; type=CDS; length=1125bp; location=Sequence derived from: HM347511:138..1262+ (Prunus speciosa
atgacattcacactacgtaagaaagaaatcttaatcgacatcctagtaag
actacctgcaaaatccctcgttcggtttctttgtacatgcaagtcatgga
gtgatttgattggcagctccagttttgttagcacacaccttcgtaggaat
gtcacaaagaatacccatgtctatctactctgccttcatcacccgaattt
tgaacgtttggtcgaccccaatgacccatatgttaaaaaggaatatcagt
ggtctcttttttgcaatgagacatttgagcagtcctccaagttaagccat
cccttagggagcacagatcattatggaatatacggttcaagcaatggttt
agtttgcatttcggatgagatattgaatttcgatagtcctatacacatat
ggaacccatcagttaggaaacctaggacccctccaatcagcaccaacatt
aacattaaattttcctatgtttctctccaattcgggttccaccctggggt
taatgactacaaggctgttaggatgatgcgtaccaacaaaaatgccttgg
cggtggaggtttatagtcttagaacagactcttggaagatgattgaagca
attcctccttggttaaaatgcacttggcagcatcacaagggtacattttt
taacggagtagcatatcacctcattgagaaatatcctatattcagcattg
tgtcattcgattcaggcagtgaagaattcgaagaattcatagcaccagat
gccatttgcggtttattgggggtatgtattgacgtttacaaggaacaaat
ttgcttgattttcgactgttatccttgtgaggaggagggcatggacaaga
ttgacttatgggttctacaagaaaaacggtggaaacaattgtgccctttt
atttatccttcgggttatgagtatcgtacaatcgggattactatggataa
taaattcttaatgcaaaaagaagattacattgggggcatagtagatctgc
atttgtgtgattacgaatccaaggacgttcttgaaacaggaattaagttg
gccatcatgaaatatggcgaaattgaatttgtattttcaattacttgcgt
agaaagtttggttctactgaattaa
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