SFB, GQ456944.1-SFB.m1 (mRNA) Pyrus sinkiangensis

Transcript Overview


Name	SFB
Unique Name	GQ456944.1-SFB.m1
Type	mRNA
Organism	Pyrus sinkiangensis ()
Source	genbank
Product	S-haplotype-specific F-box protein
Genbank Note	may be involved in control of plant self-incompatibility

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GQ456944	region	GQ456944:1..1101 +	NCBI Rosaceae gene and mRNA sequences	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
GQ456944.1-SFB.m1-cds1	GQ456944.1-SFB.m1-cds1	Pyrus sinkiangensis	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
SFB	GQ456944.1-SFB.p1	Pyrus sinkiangensis	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	290755962
nuccore	GQ456944.1

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at GQ456944:1..1101+
coding sequence from alignment at GQ456944:1..1101+

mRNA sequence

>GQ456944.1-SFB.m1 ID=GQ456944.1-SFB.m1; Name=SFB; organism=Pyrus sinkiangensis; type=mRNA; length=1101bp
atggcattcatactacgtaagaaagaaatcttaatcgacatcctagtaag
actacctgcaaaatccctcgttcggtttgtttgtacatgcaagtcatgga
gtgatttgattggtagctccagttttgttagcatacacgttaacaggaat
gtcacaaaacatgcccatgtctatttattctgcctccaccacccaaattt
tgaacgtcagaatgacaatgatgacccatatgatatagaagaacttcaat
ggtcgcttttttccaatgaaacgtttcagcagttctccaagttgagccat
cccttagaaagcacagagcagtataggatatatggtgcaagcaatggttt
agtttgcatttcagatgagatattgaatttcgatagtcctatacacatat
ggaacccgtctgttaggaaatttaggacccctccaatgagcaccaacatt
aacatgaaattttcccatgttgctctccaactcggtttccaccccggggt
taatgactacaaggctgtaaggatcatgcgtaccaacaaaggtgccttgg
cagttgaggtttacagtcttaaaacatactgttggaagatgattgaagca
attcctccttggttaaaatgcacttggaagcatcataagggtacattttt
taatggagtagcataccacatcattgagaaaggtcctatatgcagcatta
tgtcattcgattcaggcaatgaagaattcgaagaattcatagcaccagat
gacatttgcagttcatgggggttatgcatcgacatttacaaggaacgaat
ttgcttgctttttgacttttatccttgtgaggaggagtgcatggaaaaac
ggtggaaacaattgtgtccttttatttattcttcggattattgttttcgt
acaatcgggattagtatagataatgaactcttattggcaagaagaggttt
cgatcagggcatagcagatctgtgtttgtgtaattacgaatccaagcaag
ctcttgaaacagatataaagttggccgtcatgagatatggtgaaatcgaa
tccttgtttgcaattaattacgtagaaagtttggttttactcaataattg
a

protein sequence of SFB

>GQ456944.1-SFB.p1 ID=GQ456944.1-SFB.p1; Name=SFB; organism=Pyrus sinkiangensis; type=polypeptide; length=366bp
MAFILRKKEILIDILVRLPAKSLVRFVCTCKSWSDLIGSSSFVSIHVNRN
VTKHAHVYLFCLHHPNFERQNDNDDPYDIEELQWSLFSNETFQQFSKLSH
PLESTEQYRIYGASNGLVCISDEILNFDSPIHIWNPSVRKFRTPPMSTNI
NMKFSHVALQLGFHPGVNDYKAVRIMRTNKGALAVEVYSLKTYCWKMIEA
IPPWLKCTWKHHKGTFFNGVAYHIIEKGPICSIMSFDSGNEEFEEFIAPD
DICSSWGLCIDIYKERICLLFDFYPCEEECMEKRWKQLCPFIYSSDYCFR
TIGISIDNELLLARRGFDQGIADLCLCNYESKQALETDIKLAVMRYGEIE
SLFAINYVESLVLLNN

mRNA from alignment at GQ456944:1..1101+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>GQ456944.1-SFB.m1 ID=GQ456944.1-SFB.m1; Name=SFB; organism=Pyrus sinkiangensis; type=mRNA; length=1101bp; location=Sequence derived from: GQ456944:1..1101+ (Pyrus sinkiangensis
atggcattcatactacgtaagaaagaaatcttaatcgacatcctagtaag
actacctgcaaaatccctcgttcggtttgtttgtacatgcaagtcatgga
gtgatttgattggtagctccagttttgttagcatacacgttaacaggaat
gtcacaaaacatgcccatgtctatttattctgcctccaccacccaaattt
tgaacgtcagaatgacaatgatgacccatatgatatagaagaacttcaat
ggtcgcttttttccaatgaaacgtttcagcagttctccaagttgagccat
cccttagaaagcacagagcagtataggatatatggtgcaagcaatggttt
agtttgcatttcagatgagatattgaatttcgatagtcctatacacatat
ggaacccgtctgttaggaaatttaggacccctccaatgagcaccaacatt
aacatgaaattttcccatgttgctctccaactcggtttccaccccggggt
taatgactacaaggctgtaaggatcatgcgtaccaacaaaggtgccttgg
cagttgaggtttacagtcttaaaacatactgttggaagatgattgaagca
attcctccttggttaaaatgcacttggaagcatcataagggtacattttt
taatggagtagcataccacatcattgagaaaggtcctatatgcagcatta
tgtcattcgattcaggcaatgaagaattcgaagaattcatagcaccagat
gacatttgcagttcatgggggttatgcatcgacatttacaaggaacgaat
ttgcttgctttttgacttttatccttgtgaggaggagtgcatggaaaaac
ggtggaaacaattgtgtccttttatttattcttcggattattgttttcgt
acaatcgggattagtatagataatgaactcttattggcaagaagaggttt
cgatcagggcatagcagatctgtgtttgtgtaattacgaatccaagcaag
ctcttgaaacagatataaagttggccgtcatgagatatggtgaaatcgaa
tccttgtttgcaattaattacgtagaaagtttggttttactcaataattg
a

Coding sequence (CDS) from alignment at GQ456944:1..1101+

>GQ456944.1-SFB.m1 ID=GQ456944.1-SFB.m1; Name=SFB; organism=Pyrus sinkiangensis; type=CDS; length=1101bp; location=Sequence derived from: GQ456944:1..1101+ (Pyrus sinkiangensis
atggcattcatactacgtaagaaagaaatcttaatcgacatcctagtaag
actacctgcaaaatccctcgttcggtttgtttgtacatgcaagtcatgga
gtgatttgattggtagctccagttttgttagcatacacgttaacaggaat
gtcacaaaacatgcccatgtctatttattctgcctccaccacccaaattt
tgaacgtcagaatgacaatgatgacccatatgatatagaagaacttcaat
ggtcgcttttttccaatgaaacgtttcagcagttctccaagttgagccat
cccttagaaagcacagagcagtataggatatatggtgcaagcaatggttt
agtttgcatttcagatgagatattgaatttcgatagtcctatacacatat
ggaacccgtctgttaggaaatttaggacccctccaatgagcaccaacatt
aacatgaaattttcccatgttgctctccaactcggtttccaccccggggt
taatgactacaaggctgtaaggatcatgcgtaccaacaaaggtgccttgg
cagttgaggtttacagtcttaaaacatactgttggaagatgattgaagca
attcctccttggttaaaatgcacttggaagcatcataagggtacattttt
taatggagtagcataccacatcattgagaaaggtcctatatgcagcatta
tgtcattcgattcaggcaatgaagaattcgaagaattcatagcaccagat
gacatttgcagttcatgggggttatgcatcgacatttacaaggaacgaat
ttgcttgctttttgacttttatccttgtgaggaggagtgcatggaaaaac
ggtggaaacaattgtgtccttttatttattcttcggattattgttttcgt
acaatcgggattagtatagataatgaactcttattggcaagaagaggttt
cgatcagggcatagcagatctgtgtttgtgtaattacgaatccaagcaag
ctcttgaaacagatataaagttggccgtcatgagatatggtgaaatcgaa
tccttgtttgcaattaattacgtagaaagtttggttttactcaataattg
a