|
|
Marker Overview
| Name | s1_26482311 |
|---|
| dbSNP ID | N/A |
|---|
| SNP Array ID | | Cherry 6+9K SNP array: | s1_26482311 |
|
|---|
| Type | SNP |
|---|
| SNP Alleles | A/C |
|---|
| 5' Flanking Sequence | ATTGGGTCCAATGTGCCTGTCCATTTTGAGGGCTTGTGACACTACAAATGTTCCTTCTTG
CGCATAGGCCATCACGCAGATTCCACCAGAAGCCCATATTGGGAGGATTTTCATGAAGCA
TATCACCTCTTCAACCTGTTGCATGCTGCA |
|---|
| 3' Flanking Sequence | AGCCTCCATGGATTTGAACAAGACCCATCATCTTTTAGGTCATTGTCCACCACTAAAGCT
GCTTTCTTCAAGAAGCTGAGCTACCAAAGTAGTGCGAGAATTAGTAAATGAACAAGCAAA
CAATGGTGATTAAGCAATGTAAGGAAAATG |
|---|
| Species | Prunus avium |
|---|
| Publication | [view all] |
|---|
| Contact | Patricio Hinrichsen
Stijn Vanderzande
|
|---|
| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
|---|
Alignments
The following features are aligned
Publications
| Year | Publication |
|---|
| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_26482311 ID=s1_26482311; Name=s1_26482311; organism=Prunus avium; type=genetic_marker; length=301bp
ATTGGGTCCAATGTGCCTGTCCATTTTGAGGGCTTGTGACACTACAAATG
TTCCTTCTTGCGCATAGGCCATCACGCAGATTCCACCAGAAGCCCATATT
GGGAGGATTTTCATGAAGCATATCACCTCTTCAACCTGTTGCATGCTGCA
MAGCCTCCATGGATTTGAACAAGACCCATCATCTTTTAGGTCATTGTCCA
CCACTAAAGCTGCTTTCTTCAAGAAGCTGAGCTACCAAAGTAGTGCGAGA
ATTAGTAAATGAACAAGCAAACAATGGTGATTAAGCAATGTAAGGAAAAT
G
|
