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Marker Overview
| Name | s8_4536200 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s8_4536200 |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | TCCAAAAACTGACTCTACCTCTCTTCCATTTCCTCCTCGGCAGCCAACGACGTCGTTCGA
CACTCTCTCTCCCAATCCAACCCCTACGAATCCGAGCCCTTTCGGGGGCTACTGCTGTTG
GTCTCGCTTCTGGGGCCACCAAAGCTTCTT |
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| 3' Flanking Sequence | GCACTGGGCTGGCCTCCGCCATGGTCGCTGCTATTGGGAGCTCTCCAAAGCTCGCCCAAG
GTATCCATTTTCGTTTCTGTAAATTTGAAAATGGCATTTCTCGGTTTTTACATCCCACCA
TTTACATGCATTTAACATGTACCATTTGTG |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s8_4536200 ID=s8_4536200; Name=s8_4536200; organism=Prunus avium; type=genetic_marker; length=301bp
TCCAAAAACTGACTCTACCTCTCTTCCATTTCCTCCTCGGCAGCCAACGA
CGTCGTTCGACACTCTCTCTCCCAATCCAACCCCTACGAATCCGAGCCCT
TTCGGGGGCTACTGCTGTTGGTCTCGCTTCTGGGGCCACCAAAGCTTCTT
YGCACTGGGCTGGCCTCCGCCATGGTCGCTGCTATTGGGAGCTCTCCAAA
GCTCGCCCAAGGTATCCATTTTCGTTTCTGTAAATTTGAAAATGGCATTT
CTCGGTTTTTACATCCCACCATTTACATGCATTTAACATGTACCATTTGT
G
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