EMPaS-14, EMPaS-14 (genetic_marker) Prunus avium | GDR

Marker Overview

Marker Overview


Name	EMPaS-14
Genbank ID	N/A
Type	SSR
Species	Prunus avium
Primer 1	EMPaS-14.F primer: TCCGCCATATCACAATCAAC
Primer 2	EMPaS-14.R primer: TTCCACACAAAAACCAATCC
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Pp05	chromosome	Pp05:15136554..15136728 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	GDR marker alignment to genome using primer sequences
PAV05_REGINA	chromosome	PAV05_REGINA:17400346..17400542 .	Prunus avium Regina Genome v1.0 Assembly & Annotation	GDR marker alignment to genome using primer sequences
chr_5	chromosome	chr_5:31096389..31096585 .	Prunus avium Tieton Genome v2.0 Assembly & Annotation	GDR marker alignment to genome using primer sequences
Pd05	chromosome	Pd05:14469994..14470190 .	Prunus dulcis Lauranne Genome v1.0	GDR marker alignment to genome using primer sequences

Publications


Year	Publication
2004	Vaughan SP and Russel K. Characterization of novel microsatellites and development of multiplex PCR for large-scale population studies in wild cherry, Prunus avium. Molecular Ecology Notes 2004 4:429-431

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Sweet Cherry-Ra-F1	RaLG5	N/A	46.49	EMPaS-14	View
2	Sweet Cherry-RaxRi-F1	LG5	N/A	54.83	EMPaS-14	View