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Marker Overview
| Name | s1_1035107 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s1_1035107 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | CAACAAACGAACACGAGCCAACAATGGAGGTCCCATGCCTCCAGCCAAGGCTGGACGCTT
GACGAATGCATATGTGTCTTCTTTCCCTACACCTCCTCCAACGTTTGTCAGGTCTCCTTC
CCATGCTCAGTATCCTGCTGGGTACTCACC |
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| 3' Flanking Sequence | TACCATTCCCCACCCACCATGTATGGCAGCAGAAGTCCACCAACCAATCCTTATGCGTAC
TCACCTGAAGCCGCCCCTCCACTTGCCGGATCATACCCTGGAGCTCCCATGAACTATCCT
GCATACGGGGGTTATGGCAATGGTATGGTA |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_1035107 ID=s1_1035107; Name=s1_1035107; organism=Prunus avium; type=genetic_marker; length=301bp
CAACAAACGAACACGAGCCAACAATGGAGGTCCCATGCCTCCAGCCAAGG
CTGGACGCTTGACGAATGCATATGTGTCTTCTTTCCCTACACCTCCTCCA
ACGTTTGTCAGGTCTCCTTCCCATGCTCAGTATCCTGCTGGGTACTCACC
RTACCATTCCCCACCCACCATGTATGGCAGCAGAAGTCCACCAACCAATC
CTTATGCGTACTCACCTGAAGCCGCCCCTCCACTTGCCGGATCATACCCT
GGAGCTCCCATGAACTATCCTGCATACGGGGGTTATGGCAATGGTATGGT
A
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