MDP0000138698, MDP0000138698 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000138698
Unique Name	MDP0000138698
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	3662

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr6	chromosome	chr6:9957642..9961303 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC009939.167	contig	MDC009939.167:4845..8506 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000138698_exon_1	MDP0000138698_exon_1	Malus x domestica	CDS
MDP0000138698_exon_2	MDP0000138698_exon_2	Malus x domestica	CDS
MDP0000138698_exon_3	MDP0000138698_exon_3	Malus x domestica	CDS
MDP0000138698_exon_4	MDP0000138698_exon_4	Malus x domestica	CDS
MDP0000138698_exon_5	MDP0000138698_exon_5	Malus x domestica	CDS
MDP0000138698_exon_6	MDP0000138698_exon_6	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000138698	MDP0000138698	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 112..203 score: 4.7
None	No IPR available	SEG	seg	seg	coord: 15..20 score: NAcoord: 246..252 score
None	No IPR available	SEG	seg	seg	coord: 36..40 score
None	No IPR available	SEG	seg	seg	coord: 35..39 score
None	No IPR available	SEG	seg	seg	coord: 3..14 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:9957642..9961303-
mRNA from alignment at MDC009939.167:4845..8506-
coding sequence from alignment at MDC009939.167:4845..8506-

mRNA sequence

>MDP0000138698 ID=MDP0000138698; Name=MDP0000138698; organism=Malus x domestica; type=mRNA; length=3662bp
ATGGCGACAGCAATCAAAATCGAGCGCCAACGACCCGAATATTCTTCTTC
TTCTTCTTCCCAAAATGTAAGTAATCCGGATAGCCCACCAATTCGAACAT
ACATTTTGAGTTCTTTTTGTTGGGTTTTCTTTTCTTTTTCCAGTACAACT
GTAGTTTATAATTTAATTTTTTTAAATATATTGTTATGGAATTTCGTTGT
ATAGTTGATATAGCTGAATCTGTGGGTAAATTTTTTTGAAGGCCAATGGA
GATTGGTTGCAAGATTCCAAAAAGATTGAACCTTTGGTATTGAATGAATG
AAGTTTGTTCTGCTCTGTGATCAACATATATATATACACACACACACACA
CATATACATATATATGTATATATTTGTGTGTTAATTTAATTAGGAATTTA
GGATTCAACCTTGTTTTTTATACCCTTTTTGTGTTTGATGGGGTTCCCAA
ATTTTTTTATGAGAAGAGAATTAGATGATGTGAATATTTTACCATGGAAT
GAATAACCGCAAACTGGTTAGTTTAGTGTTTTTATGTTTTTRTTCTGAAG
CTGCTAGAATCCAATCTGCTTCCATGTTAASCACGASATATAAGAATTAT
ATGAGCAAGGACGGAGCTAGAAMTTTTATTTAYTGAGGCCAACTTCTGAA
AACAAAATGAACTTATTATCCAAAAAAAATGTTATAATTGATCGATAATG
ATGTGTCACAATGCTATTGTTACAAAGATTTAGATTTGGGTGGATGATAT
TTGTTAGAGAGGTAAAGCGGGAGCTAAAGGAAGAGAATTTGTATAGGATA
GAARTCTCTTTCCTTGCCAGTTCTATCATCTGTTAGCATTGATCCAGCAG
CCGAGGGCAGAGCCTAATTGTTAATCTCATTGATCATATTCTTATACAAC
GATAAGTATCTTGGGTCACTACAGCCATAGAACTATGTAATTAGTAGCTA
GGTGAGAGTAGGATGAGGATGAACAATTGGTTTATTGAGTTTAGAGAATG
AAGGTTTATGTGGAACTAGTGTATTCTTCACGATAATCATGAATACAAAG
GTTTTTCTGTTTCTTTTTCTTACAAGTTGAGTGGGGGCAGCTGCCCCATC
AGGGCAATTGCTAACTCCGTCTATGGTTATGATGGATTAGGAACTAGTTT
GTTTCAGCTTTCCAGTTTACTTCTTTCTTTGGCAATATATGATGGTTGAA
ACTATGATAGACAGATAGAGGTATCAACATATGAGCATAGATGTTAGCCT
ACAATATTTGTTTTTCCTTCCATGTTTTTTTCTTTTTGGTGTGTTTTTCG
GTAGTTTTTACAAAAGAATATGGTTTTATTATAATGAAGAAAACAATATT
TGTTTAGACCATGAACAGACAGCTGACTGGAGGTATCTATCTACGTGTAT
GYGATGTTTTCTTTACGCTGAGAAGTTTTCCTGATAAGTTAGTATATTAA
TGCACCTTCATACGTAAATAGGGCAAGATTCTTGGTAGTTTGTTTATCGT
AAAGGGCTTAATATTCTCAATTGTTATGGCAGGTACTTATATGTAAATGA
AATGCATGCTGAGAATCTCAACCAARACATTATGCTGTTGGTTTAATTAT
CAACTATTGTATTGTGGTCTGAATTCTTTCTTATTAAATTCAGCTGGTAT
TTTACCCATATTGAGATCTGTATGTGTATSATTCATTTTTGAGYTCTCTC
TCTCCGTCCACTTGTACTCTGTGTGTATCAAAAAATTTTGGTCTTTGTTT
TGTTTTGTTTTGATTTATTTGCTAATTTTGGATAACTAAGTTTCTCATTT
GCTAATCCAAAAGTCTTTTTTTKTCAAATCCTTTCAGTAAATTAGCATAT
CAAATTCATGGGAATTTAGGAATTAATGTACACTTGTTGATCTTTTTTCA
AAAGCATATTCACTGAGTACACATCCTGTGTAACAGACTTAGGAGGATAT
CAAAATTTATGTTTGGGAATGAGCTTCCTGCTAAAAGAAAGGTAATTTCT
TGTACTAGCTATGGACACATGCCTTAATCTTCTTCTGTCTTTGTATTTAT
ATTTATTTTTCCTGAGTTGTGTCCAGATATGACAAGAACTACAAAGGGAA
CTAAGGATATCCAGCATTCCATTAGCGGTTGAAGAACTAATTGATCATAT
ATCTTGGATTGTTAGTGTTTTCGTTTTGGAAACATGTGAGACTTTATGCA
TCATGTATATCTGTGCAATGTATATCCCTTATATCTTTATTGTACAAAAT
ATTAGTTCACTTACAATTTAACTCTATTCATCGTTGTCRTGTCTTTTAGG
GTAAACAGTTAATATTTAAGTCTATTGATACCGGAATTTGATTGAGCACG
AGAGAGAGAAACAGCAAAGCAAGGGAAAGAACTATTTTCCCACAAGAAAT
ATAATACCCCTCCCTCCCCTCKGCCGTGTAGTGCTTAATTATCTATAGAA
CTCATKGCATGTGACAATCATTCCCGTTCTAAGTCATTCCTTTTTTTAAT
TATTTTAAATTACGCAATTATCATTTTTACGCTATGCAATTATTGTTATG
CTGTGTTTGTAGTTTTGTCACATKTTTTTTTTTTTTTTTTATGTTATTTT
ATTAGGATGAATTCTGATTCAGCTATAAGAAAACGAGGAMGGGGTCAAAA
CAAACGTTTCTGGACAACCAAAGAAGATTCTGCATTAGTTGAATCATTGC
AAGAATTATATCGCAACACCAAGTGGCGAGCTGATAATGGTTTCAAAAAT
GGATACTTAACCCATATAGAGGCAATACTGGAAGCCAAACTGCCGGGTTG
TGGAATACAAGCGTCTCCTCACATTGAATCACGAGTTAAGACATTGAAGA
AAAAGTATTGTGCCTTAACTGAGATGTTATCTCAAGGAGGATTTAGTTGG
GATGATAAACAAATGATGTTGGTTTGCAATAGAAGTCTMTATGATGAATG
GGTGAAGGTAAGTCTGCAGATATCCTTATTCATTATTTCTTATATTTTCC
TGTCGACTATGGATTATAGTTTCTGTAATATTCTGTAATTGTAGAAAAGA
AGGGATGCAAGTGGATTGTATGGCAAGCCATTTCCATTCTACCATGTCTT
GCGGGAGATATATGAAAAAGGTCGTCATACTGGTGCAAATGTTGGCAATG
ATGATGATGATGAAGAGGACATTAGGCAAGAGGATGCAAACATTGATCAA
ACTCATGGCGGGGACGATGATTTGGGTGAAAATGTGATTCTGAATGTGGA
TACGAATATAGAATCAGAGTCTGAAGGGATGGAACAGTTTGATGTATCAT
TTAGTACCCAACAACGAAGGCCTGCACAAAGTACCCCAAGTGTTTCAGAT
CCCGGTCGCAGGGTGAAAGCAAAGGTAATGGAGGAGATGACAAAGAATTT
TGGGAGTATGGCAGCTTCGGTACAAGCGATGACATCTAAGATTGATGCTC
TGATTAAAGTTCTTTCAACTGATAAACAAGTGGSTGAATTGCAAGCTAAA
CTTGACGGTGAGTTGAGCAAAATTGAAGGCCTTACCGGATTGCAAGTCTT
TAGAGCGATAAATATACTGGCCACCAATCATGACCTGCTGAGAGTGTTCT
TTACCATGTCCGAGGAAAGGAAAAAGGTATACATTACGCATCTGTTAGAG
TATGGCTTATGA

protein sequence of MDP0000138698

>MDP0000138698 ID=MDP0000138698; Name=MDP0000138698; organism=Malus x domestica; type=polypeptide; length=415bp
MATAIKIERQRPEYSSSSSSQNANGDWLQDSKKIEPLTMNRQLTGGIYLR
VCDVFFTLRSFPDNIFTEYTSCVTDLGGYQNLCLGMSFLLKERMNSDSAI
RKRGXGQNKRFWTTKEDSALVESLQELYRNTKWRADNGFKNGYLTHIEAI
LEAKLPGCGIQASPHIESRVKTLKKKYCALTEMLSQGGFSWDDKQMMLVC
NRSLYDEWVKKRRDASGLYGKPFPFYHVLREIYEKGRHTGANVGNDDDDE
EDIRQEDANIDQTHGGDDDLGENVILNVDTNIESESEGMEQFDVSFSTQQ
RRPAQSTPSVSDPGRRVKAKVMEEMTKNFGSMAASVQAMTSKIDALIKVL
STDKQVXELQAKLDGELSKIEGLTGLQVFRAINILATNHDLLRVFFTMSE
ERKKVYITHLLEYGL

mRNA from alignment at chr6:9957642..9961303-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000138698 ID=MDP0000138698; Name=MDP0000138698; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr6:9957642..9961303- (Malus x domestica

mRNA from alignment at MDC009939.167:4845..8506-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000138698 ID=MDP0000138698; Name=MDP0000138698; organism=Malus x domestica; type=mRNA; length=3662bp; location=Sequence derived from: MDC009939.167:4845..8506- (Malus x domestica
ATGGCGACAGCAATCAAAATCGAGCGCCAACGACCCGAATATTCTTCTTC
TTCTTCTTCCCAAAATGTAAGTAATCCGGATAGCCCACCAATTCGAACAT
ACATTTTGAGTTCTTTTTGTTGGGTTTTCTTTTCTTTTTCCAGTACAACT
GTAGTTTATAATTTAATTTTTTTAAATATATTGTTATGGAATTTCGTTGT
ATAGTTGATATAGCTGAATCTGTGGGTAAATTTTTTTGAAGGCCAATGGA
GATTGGTTGCAAGATTCCAAAAAGATTGAACCTTTGGTATTGAATGAATG
AAGTTTGTTCTGCTCTGTGATCAACATATATATATACACACACACACACA
CATATACATATATATGTATATATTTGTGTGTTAATTTAATTAGGAATTTA
GGATTCAACCTTGTTTTTTATACCCTTTTTGTGTTTGATGGGGTTCCCAA
ATTTTTTTATGAGAAGAGAATTAGATGATGTGAATATTTTACCATGGAAT
GAATAACCGCAAACTGGTTAGTTTAGTGTTTTTATGTTTTTRTTCTGAAG
CTGCTAGAATCCAATCTGCTTCCATGTTAASCACGASATATAAGAATTAT
ATGAGCAAGGACGGAGCTAGAAMTTTTATTTAYTGAGGCCAACTTCTGAA
AACAAAATGAACTTATTATCCAAAAAAAATGTTATAATTGATCGATAATG
ATGTGTCACAATGCTATTGTTACAAAGATTTAGATTTGGGTGGATGATAT
TTGTTAGAGAGGTAAAGCGGGAGCTAAAGGAAGAGAATTTGTATAGGATA
GAARTCTCTTTCCTTGCCAGTTCTATCATCTGTTAGCATTGATCCAGCAG
CCGAGGGCAGAGCCTAATTGTTAATCTCATTGATCATATTCTTATACAAC
GATAAGTATCTTGGGTCACTACAGCCATAGAACTATGTAATTAGTAGCTA
GGTGAGAGTAGGATGAGGATGAACAATTGGTTTATTGAGTTTAGAGAATG
AAGGTTTATGTGGAACTAGTGTATTCTTCACGATAATCATGAATACAAAG
GTTTTTCTGTTTCTTTTTCTTACAAGTTGAGTGGGGGCAGCTGCCCCATC
AGGGCAATTGCTAACTCCGTCTATGGTTATGATGGATTAGGAACTAGTTT
GTTTCAGCTTTCCAGTTTACTTCTTTCTTTGGCAATATATGATGGTTGAA
ACTATGATAGACAGATAGAGGTATCAACATATGAGCATAGATGTTAGCCT
ACAATATTTGTTTTTCCTTCCATGTTTTTTTCTTTTTGGTGTGTTTTTCG
GTAGTTTTTACAAAAGAATATGGTTTTATTATAATGAAGAAAACAATATT
TGTTTAGACCATGAACAGACAGCTGACTGGAGGTATCTATCTACGTGTAT
GYGATGTTTTCTTTACGCTGAGAAGTTTTCCTGATAAGTTAGTATATTAA
TGCACCTTCATACGTAAATAGGGCAAGATTCTTGGTAGTTTGTTTATCGT
AAAGGGCTTAATATTCTCAATTGTTATGGCAGGTACTTATATGTAAATGA
AATGCATGCTGAGAATCTCAACCAARACATTATGCTGTTGGTTTAATTAT
CAACTATTGTATTGTGGTCTGAATTCTTTCTTATTAAATTCAGCTGGTAT
TTTACCCATATTGAGATCTGTATGTGTATSATTCATTTTTGAGYTCTCTC
TCTCCGTCCACTTGTACTCTGTGTGTATCAAAAAATTTTGGTCTTTGTTT
TGTTTTGTTTTGATTTATTTGCTAATTTTGGATAACTAAGTTTCTCATTT
GCTAATCCAAAAGTCTTTTTTTKTCAAATCCTTTCAGTAAATTAGCATAT
CAAATTCATGGGAATTTAGGAATTAATGTACACTTGTTGATCTTTTTTCA
AAAGCATATTCACTGAGTACACATCCTGTGTAACAGACTTAGGAGGATAT
CAAAATTTATGTTTGGGAATGAGCTTCCTGCTAAAAGAAAGGTAATTTCT
TGTACTAGCTATGGACACATGCCTTAATCTTCTTCTGTCTTTGTATTTAT
ATTTATTTTTCCTGAGTTGTGTCCAGATATGACAAGAACTACAAAGGGAA
CTAAGGATATCCAGCATTCCATTAGCGGTTGAAGAACTAATTGATCATAT
ATCTTGGATTGTTAGTGTTTTCGTTTTGGAAACATGTGAGACTTTATGCA
TCATGTATATCTGTGCAATGTATATCCCTTATATCTTTATTGTACAAAAT
ATTAGTTCACTTACAATTTAACTCTATTCATCGTTGTCRTGTCTTTTAGG
GTAAACAGTTAATATTTAAGTCTATTGATACCGGAATTTGATTGAGCACG
AGAGAGAGAAACAGCAAAGCAAGGGAAAGAACTATTTTCCCACAAGAAAT
ATAATACCCCTCCCTCCCCTCKGCCGTGTAGTGCTTAATTATCTATAGAA
CTCATKGCATGTGACAATCATTCCCGTTCTAAGTCATTCCTTTTTTTAAT
TATTTTAAATTACGCAATTATCATTTTTACGCTATGCAATTATTGTTATG
CTGTGTTTGTAGTTTTGTCACATKTTTTTTTTTTTTTTTTATGTTATTTT
ATTAGGATGAATTCTGATTCAGCTATAAGAAAACGAGGAMGGGGTCAAAA
CAAACGTTTCTGGACAACCAAAGAAGATTCTGCATTAGTTGAATCATTGC
AAGAATTATATCGCAACACCAAGTGGCGAGCTGATAATGGTTTCAAAAAT
GGATACTTAACCCATATAGAGGCAATACTGGAAGCCAAACTGCCGGGTTG
TGGAATACAAGCGTCTCCTCACATTGAATCACGAGTTAAGACATTGAAGA
AAAAGTATTGTGCCTTAACTGAGATGTTATCTCAAGGAGGATTTAGTTGG
GATGATAAACAAATGATGTTGGTTTGCAATAGAAGTCTMTATGATGAATG
GGTGAAGGTAAGTCTGCAGATATCCTTATTCATTATTTCTTATATTTTCC
TGTCGACTATGGATTATAGTTTCTGTAATATTCTGTAATTGTAGAAAAGA
AGGGATGCAAGTGGATTGTATGGCAAGCCATTTCCATTCTACCATGTCTT
GCGGGAGATATATGAAAAAGGTCGTCATACTGGTGCAAATGTTGGCAATG
ATGATGATGATGAAGAGGACATTAGGCAAGAGGATGCAAACATTGATCAA
ACTCATGGCGGGGACGATGATTTGGGTGAAAATGTGATTCTGAATGTGGA
TACGAATATAGAATCAGAGTCTGAAGGGATGGAACAGTTTGATGTATCAT
TTAGTACCCAACAACGAAGGCCTGCACAAAGTACCCCAAGTGTTTCAGAT
CCCGGTCGCAGGGTGAAAGCAAAGGTAATGGAGGAGATGACAAAGAATTT
TGGGAGTATGGCAGCTTCGGTACAAGCGATGACATCTAAGATTGATGCTC
TGATTAAAGTTCTTTCAACTGATAAACAAGTGGSTGAATTGCAAGCTAAA
CTTGACGGTGAGTTGAGCAAAATTGAAGGCCTTACCGGATTGCAAGTCTT
TAGAGCGATAAATATACTGGCCACCAATCATGACCTGCTGAGAGTGTTCT
TTACCATGTCCGAGGAAAGGAAAAAGGTATACATTACGCATCTGTTAGAG
TATGGCTTATGA

Coding sequence (CDS) from alignment at MDC009939.167:4845..8506-

>MDP0000138698 ID=MDP0000138698; Name=MDP0000138698; organism=Malus x domestica; type=CDS; length=1248bp; location=Sequence derived from: MDC009939.167:4845..8506- (Malus x domestica
ATGGCGACAGCAATCAAAATCGAGCGCCAACGACCCGAATATTCTTCTTC
TTCTTCTTCCCAAAATGCCAATGGAGATTGGTTGCAAGATTCCAAAAAGA
TTGAACCTTTGACCATGAACAGACAGCTGACTGGAGGTATCTATCTACGT
GTATGYGATGTTTTCTTTACGCTGAGAAGTTTTCCTGATAACATATTCAC
TGAGTACACATCCTGTGTAACAGACTTAGGAGGATATCAAAATTTATGTT
TGGGAATGAGCTTCCTGCTAAAAGAAAGGATGAATTCTGATTCAGCTATA
AGAAAACGAGGAMGGGGTCAAAACAAACGTTTCTGGACAACCAAAGAAGA
TTCTGCATTAGTTGAATCATTGCAAGAATTATATCGCAACACCAAGTGGC
GAGCTGATAATGGTTTCAAAAATGGATACTTAACCCATATAGAGGCAATA
CTGGAAGCCAAACTGCCGGGTTGTGGAATACAAGCGTCTCCTCACATTGA
ATCACGAGTTAAGACATTGAAGAAAAAGTATTGTGCCTTAACTGAGATGT
TATCTCAAGGAGGATTTAGTTGGGATGATAAACAAATGATGTTGGTTTGC
AATAGAAGTCTMTATGATGAATGGGTGAAGAAAAGAAGGGATGCAAGTGG
ATTGTATGGCAAGCCATTTCCATTCTACCATGTCTTGCGGGAGATATATG
AAAAAGGTCGTCATACTGGTGCAAATGTTGGCAATGATGATGATGATGAA
GAGGACATTAGGCAAGAGGATGCAAACATTGATCAAACTCATGGCGGGGA
CGATGATTTGGGTGAAAATGTGATTCTGAATGTGGATACGAATATAGAAT
CAGAGTCTGAAGGGATGGAACAGTTTGATGTATCATTTAGTACCCAACAA
CGAAGGCCTGCACAAAGTACCCCAAGTGTTTCAGATCCCGGTCGCAGGGT
GAAAGCAAAGGTAATGGAGGAGATGACAAAGAATTTTGGGAGTATGGCAG
CTTCGGTACAAGCGATGACATCTAAGATTGATGCTCTGATTAAAGTTCTT
TCAACTGATAAACAAGTGGSTGAATTGCAAGCTAAACTTGACGGTGAGTT
GAGCAAAATTGAAGGCCTTACCGGATTGCAAGTCTTTAGAGCGATAAATA
TACTGGCCACCAATCATGACCTGCTGAGAGTGTTCTTTACCATGTCCGAG
GAAAGGAAAAAGGTATACATTACGCATCTGTTAGAGTATGGCTTATGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR024752	Myb/SANT-like_dom