MDP0000148102, MDP0000148102 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000148102
Unique Name	MDP0000148102
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	3630

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr4	chromosome	chr4:22926439..22930068 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC004190.269	contig	MDC004190.269:10068..13697 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.0	2012-04-02

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000148102_exon_1	MDP0000148102_exon_1	Malus x domestica	CDS
MDP0000148102_exon_2	MDP0000148102_exon_2	Malus x domestica	CDS
MDP0000148102_exon_3	MDP0000148102_exon_3	Malus x domestica	CDS
MDP0000148102_exon_4	MDP0000148102_exon_4	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000148102	MDP0000148102	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005067	Fatty acid desaturase, type 2	PIR	PIRSF000346	Delta-9 acyl-ACP desaturase	coord: 67..454 score: 1.2e
IPR005067	Fatty acid desaturase, type 2	PFAM	PF03405	FA_desaturase_2	coord: 124..452 score: 7.2e
IPR005803	Stearoyl-ACP desaturase, conserved site	PROSITE	PS00574	FATTY_ACID_DESATUR_2	coord: 374..393 score
IPR009078	Ferritin/ribonucleotide reductase-like	SUPERFAMILY	47240	Ferritin-like	coord: 110..454 score: 1.9e
IPR012348	Ribonucleotide reductase-related	GENE3D	1.10.620.20	no description	coord: 111..453 score: 2e
None	No IPR available	SEG	seg	seg	coord: 34..45 score
None	No IPR available	SEG	seg	seg	coord: 24..35 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:22926439..22930068+
mRNA from alignment at MDC004190.269:10068..13697+
coding sequence from alignment at MDC004190.269:10068..13697+

mRNA sequence

>MDP0000148102 ID=MDP0000148102; Name=MDP0000148102; organism=Malus x domestica; type=mRNA; length=3630bp
ATGGCTCTGAGTCTGAATTCGATGCTGACCTTCCCGTCTCACAACCTCAC
TGCCAAGTCCCACAATCTCAGATCTCCCAAAATCTTCATGGCCTCCACTC
TTCACTCCTCCACCAAGTGAGTTTCCTTCTCTTCAATTCATTTCTGCACT
TTCATTGCTTGCGTGCGCGGCTGATCATCTTGGGTGTTCGGATTCTGTGC
CCACTTGGGGAAAATGCAGATGGGTATCKCCAAGAACGAATATTTAACCA
TTCTGCTGATCTGAGTTTTTATTTGCTAATTTTTTATGCTAATTCAGCTG
AACAGGGTTTGTTTTTGGATTTCTGGGATTCTATTTTGCATTAATCTCAT
TCATTTTGTATACTTTTTGAGAAGTCTTTTGTAATTATTGAGGTTGCTAA
GCATAATTGAAATTTATTGTATTCCTATTTTCCTTTCTGTTTTTTTTGTT
TGTTTAATTTTTGGGATCCGGTTGTTAGCTAATTCCTCTTGTCYTTCACC
TGCACGAATGGTTATCTGTTCAATTTTGCTACAGAAACATATAGTAGAAC
TTCTAATGATGATTGGATGCTTTTTGAATCTTATTTTCTATATAAAAAAA
AAATCCTCTTTGTGCTCTTATTGCTATTGAATTTTATTCTGTTGATCTTG
CTGGGATATTTTAAAAAGTGATATGAAAATCGCTAGTAAGTTTTCCCTTT
GTATTTAACTATTTCTTACATTAGTTGAGGGGTAGGTCTGATTTCTTGGG
TTTAACTCTTTCTTTTGGGACTGTGTCCTGTAAGTTGACTAATTTCATTT
ATTTAATCGATTTATTCAGTCTATGTTATTTCATATACAAGTTTAATGTA
TCAATTTTCCCCGTGTCTTATTCTTTTTATGCATTTTTTGGTTTTGTATT
TCTCCGATTACTTGGTTTTTAAGAKTTAGGGAGAAAGTATATGGAAGAAG
GGGTAGATGGAGAAAGTTGGTGGGAGGGAGAAGAAGAAACAAAAAATAAT
TAATGAAAGCAATATCTTGAAAGTAAAAACAGATTTATCCTCGTACATTT
TTTCTACTTCATTCAGACGATTCTTCTTCATCCTTCTTTCMMMMATRKRS
TTTYTCSWTAMMKYRARCASWAWMRRGTGWMSTWAAASTWAAAATTAAAT
GGCCCTTTCTGTGATTGAGTGGTTATTACAAAGTTTTTTTTTAGTGATTT
CTCACTAGTTTATTTTTTTCCCATTAAAGTCAGCTACTTTTGTGTGCTTA
ATGTTTGAGTCTATGCATTTGCTTGTTTGTCAATTGTAATATCATTTTAT
GGGTTCGTGCAATGTAGGTTGTCAGATCATTGTTTCTATTGTGCTAGACA
CTTACTCCTTACATTTTCAAGCATTTRGGTGTCATATTTGTTTGTTGATA
TGGTTAGTGGTATTCGTATTGAGATTTACAWTGGTATCCATGATATCCAT
TTTTTTCCATGTTCTCAAGTTTTCACCTTTTCAGTTTTAGCTGTTACGCT
GTAAGCAACAACTACTGTTTGTTGTGTTCAGTTTTACAGCTGAATTTGGT
AGTTGCCTGTATATTTGACTTCTCTGTTCTGTATATTGCTGCTGGTCATG
TTTGCTYCCCCYCCCCCCCCCCCCCCAAAAAAATTGGCAATCTTAATCTC
TTGCTCGTTTCTCGTTTTTGTTAACTTTGTATKACTATATGTACGCTCTC
TCTCCCACCTCTAGATAATTATATCGAGAACGATGATGTTGTTAGAATCA
TTATTTGAAGTATACCAATTTTTAATCTATTTTTTCTGCTTTATATAGAG
AGACTGAGAATCTGAAGAAGTCTTTTGGACCTCCACGTGAGTTACATGTT
CAGGTGACTCATTCAATGCCTCCTCAACAGATTGAGATCTTCAAGTCATT
AGAGGGTTGGGCTGAGAATAACATCTTGGTACACCTAAAGCCTGTTGAGA
AATGTTGGCAACCACAAGATTTTCTTCCGCTCCCTGAGTCAGATGGATTT
GAGGAGCAAGTTAAGGAGTTGAGGGAAAGAGCAAGGGAAATTCCTGATGA
TTACTTTGTTGTGTTGGTTGGAGATATGATCACAGAAGAAGCCCTTCCAA
CGTACCAGACAATGCTTAATACCCTAGACGGAGTTCGGGATGAGACTGGT
GCAAGCCTTACTTCCTGGGCTATTTGGACCAGGGCGTGGACTGCTGAAGA
GAATAGGCATGGTGATCTTCTTAACAAGTATCTTTATCTCTCTGGACGAG
TAGATATGAGACAAATCGAGAAGACAATTCAGTACCTTATTGGATCAGGA
ATGGTGAGTGCTTTCTTTCCTCTCATTTTGTCTGTTTTTGTTATTTTTTG
GACACTGATATTTTTAGATAACTTTTCTGAGCCACGCTTAGGAWTTTCAG
CATCAATGTTATACTAATCTTGAAGGATGCAAACTTGTTGAATAAGGGGC
AATGCTATTATTATCTTCTTCTTTTTTGTTTTACATTATTGCGCTGACCG
GAGTTTGGGATGCTTAAAACCTTTTGGCTGGTCGTTAATATATTACAGTA
GGGAGACGAGAACAAGTCATAGAATGTGAACAGTACATGGTGTCTTAAAG
TTCCAGTGTCATTTTTGTTTACGGAAGTCTTTCTTTATGTTCTTTTATAG
CACTATGCTTCTGGCACCTCAGAGAACCTCTGCATTGTAACCGTTTGTGG
AAAATGAAGCATTTATGTGTGACTTATTGAGTTAACAAACTACTTTAAGG
AATAGCCATTAAGAGATTACGTTGATTGGAATGTTGTAACTGCATGATTG
TCACTTATTTTCATGGATGTAATCTCATGAGTTATCACTACTATGTTTCA
GACATACACACACACACACAGAACCTTCTTAAGAAGGAACATCTACCCCA
TTTTCCCTCTCTCCAATTTTGGTTGCCTGATTTAAACTCTGCACAGCTTA
CGSCTGTTAAACATAGCTRAAATTTTCTTTTTATGCTGTTAGTAGTTGGT
ACTATTATTATTATGAATAATTAATATTACATTTATACTATCTTGGTTTT
CAATTTTTCTGTTCTGTAGGATCCTAAAACAGAGAACAATCCCTACCTTG
GGTTCATTTACACTTCATTCCAAGAGAGGGCAACATTCATCTCCCATGGG
AACACAGCCAGGCAAGCCAAAGAGCATGGGGACTTGAAATTGGCTCAGAT
ATGTGGCACCATTGCCTCGGATGAAAAGCGCCATGAAACTGCGTATACAA
AGATTGTGGAAAAGCTGTTTGAGATTGATCCAGATGGCACTGTGTTGGCC
TTAGCTGACATGATGAGGAAAAAGATATCAATGCCCGCCCACTTGATGTA
CGATGGTCAGGATGATAATCTGTTTGATCATTTCTCAGCTGTTGCCCAGA
GGCTTGAGGTGTATACTGCCAGGGATTATGCTGATATATTGGAGTTTTTG
GTTGGAAGATGGAACGTGGAGAAGTTGACTGGTCTTTCTGGTGAGGGACG
CAAGGCACAAGATTTTGTGTGTAAATTGCCACCGAGAATCAGGAGGTTGG
AGGAAAGAGCACAGGGAAGGGCCAAGGCTTCATCCCTTGTTCCATTCAGC
TGGATTTTTGGTAGAGAAGTAAAGGTTTAA

protein sequence of MDP0000148102

>MDP0000148102 ID=MDP0000148102; Name=MDP0000148102; organism=Malus x domestica; type=polypeptide; length=454bp
MALSLNSMLTFPSHNLTAKSHNLRSPKIFMASTLHSSTKLSDHCFYCARH
LLLTFSSIXVSYLFVDMVSGIRIEIYXGIHDIHFFPCSQVFTFSVLAVTL
ETENLKKSFGPPRELHVQVTHSMPPQQIEIFKSLEGWAENNILVHLKPVE
KCWQPQDFLPLPESDGFEEQVKELRERAREIPDDYFVVLVGDMITEEALP
TYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGR
VDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARQ
AKEHGDLKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTVLALADMM
RKKISMPAHLMYDGQDDNLFDHFSAVAQRLEVYTARDYADILEFLVGRWN
VEKLTGLSGEGRKAQDFVCKLPPRIRRLEERAQGRAKASSLVPFSWIFGR
EVKV

mRNA from alignment at chr4:22926439..22930068+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000148102 ID=MDP0000148102; Name=MDP0000148102; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr4:22926439..22930068+ (Malus x domestica

mRNA from alignment at MDC004190.269:10068..13697+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000148102 ID=MDP0000148102; Name=MDP0000148102; organism=Malus x domestica; type=mRNA; length=3630bp; location=Sequence derived from: MDC004190.269:10068..13697+ (Malus x domestica
ATGGCTCTGAGTCTGAATTCGATGCTGACCTTCCCGTCTCACAACCTCAC
TGCCAAGTCCCACAATCTCAGATCTCCCAAAATCTTCATGGCCTCCACTC
TTCACTCCTCCACCAAGTGAGTTTCCTTCTCTTCAATTCATTTCTGCACT
TTCATTGCTTGCGTGCGCGGCTGATCATCTTGGGTGTTCGGATTCTGTGC
CCACTTGGGGAAAATGCAGATGGGTATCKCCAAGAACGAATATTTAACCA
TTCTGCTGATCTGAGTTTTTATTTGCTAATTTTTTATGCTAATTCAGCTG
AACAGGGTTTGTTTTTGGATTTCTGGGATTCTATTTTGCATTAATCTCAT
TCATTTTGTATACTTTTTGAGAAGTCTTTTGTAATTATTGAGGTTGCTAA
GCATAATTGAAATTTATTGTATTCCTATTTTCCTTTCTGTTTTTTTTGTT
TGTTTAATTTTTGGGATCCGGTTGTTAGCTAATTCCTCTTGTCYTTCACC
TGCACGAATGGTTATCTGTTCAATTTTGCTACAGAAACATATAGTAGAAC
TTCTAATGATGATTGGATGCTTTTTGAATCTTATTTTCTATATAAAAAAA
AAATCCTCTTTGTGCTCTTATTGCTATTGAATTTTATTCTGTTGATCTTG
CTGGGATATTTTAAAAAGTGATATGAAAATCGCTAGTAAGTTTTCCCTTT
GTATTTAACTATTTCTTACATTAGTTGAGGGGTAGGTCTGATTTCTTGGG
TTTAACTCTTTCTTTTGGGACTGTGTCCTGTAAGTTGACTAATTTCATTT
ATTTAATCGATTTATTCAGTCTATGTTATTTCATATACAAGTTTAATGTA
TCAATTTTCCCCGTGTCTTATTCTTTTTATGCATTTTTTGGTTTTGTATT
TCTCCGATTACTTGGTTTTTAAGAKTTAGGGAGAAAGTATATGGAAGAAG
GGGTAGATGGAGAAAGTTGGTGGGAGGGAGAAGAAGAAACAAAAAATAAT
TAATGAAAGCAATATCTTGAAAGTAAAAACAGATTTATCCTCGTACATTT
TTTCTACTTCATTCAGACGATTCTTCTTCATCCTTCTTTCMMMMATRKRS
TTTYTCSWTAMMKYRARCASWAWMRRGTGWMSTWAAASTWAAAATTAAAT
GGCCCTTTCTGTGATTGAGTGGTTATTACAAAGTTTTTTTTTAGTGATTT
CTCACTAGTTTATTTTTTTCCCATTAAAGTCAGCTACTTTTGTGTGCTTA
ATGTTTGAGTCTATGCATTTGCTTGTTTGTCAATTGTAATATCATTTTAT
GGGTTCGTGCAATGTAGGTTGTCAGATCATTGTTTCTATTGTGCTAGACA
CTTACTCCTTACATTTTCAAGCATTTRGGTGTCATATTTGTTTGTTGATA
TGGTTAGTGGTATTCGTATTGAGATTTACAWTGGTATCCATGATATCCAT
TTTTTTCCATGTTCTCAAGTTTTCACCTTTTCAGTTTTAGCTGTTACGCT
GTAAGCAACAACTACTGTTTGTTGTGTTCAGTTTTACAGCTGAATTTGGT
AGTTGCCTGTATATTTGACTTCTCTGTTCTGTATATTGCTGCTGGTCATG
TTTGCTYCCCCYCCCCCCCCCCCCCCAAAAAAATTGGCAATCTTAATCTC
TTGCTCGTTTCTCGTTTTTGTTAACTTTGTATKACTATATGTACGCTCTC
TCTCCCACCTCTAGATAATTATATCGAGAACGATGATGTTGTTAGAATCA
TTATTTGAAGTATACCAATTTTTAATCTATTTTTTCTGCTTTATATAGAG
AGACTGAGAATCTGAAGAAGTCTTTTGGACCTCCACGTGAGTTACATGTT
CAGGTGACTCATTCAATGCCTCCTCAACAGATTGAGATCTTCAAGTCATT
AGAGGGTTGGGCTGAGAATAACATCTTGGTACACCTAAAGCCTGTTGAGA
AATGTTGGCAACCACAAGATTTTCTTCCGCTCCCTGAGTCAGATGGATTT
GAGGAGCAAGTTAAGGAGTTGAGGGAAAGAGCAAGGGAAATTCCTGATGA
TTACTTTGTTGTGTTGGTTGGAGATATGATCACAGAAGAAGCCCTTCCAA
CGTACCAGACAATGCTTAATACCCTAGACGGAGTTCGGGATGAGACTGGT
GCAAGCCTTACTTCCTGGGCTATTTGGACCAGGGCGTGGACTGCTGAAGA
GAATAGGCATGGTGATCTTCTTAACAAGTATCTTTATCTCTCTGGACGAG
TAGATATGAGACAAATCGAGAAGACAATTCAGTACCTTATTGGATCAGGA
ATGGTGAGTGCTTTCTTTCCTCTCATTTTGTCTGTTTTTGTTATTTTTTG
GACACTGATATTTTTAGATAACTTTTCTGAGCCACGCTTAGGAWTTTCAG
CATCAATGTTATACTAATCTTGAAGGATGCAAACTTGTTGAATAAGGGGC
AATGCTATTATTATCTTCTTCTTTTTTGTTTTACATTATTGCGCTGACCG
GAGTTTGGGATGCTTAAAACCTTTTGGCTGGTCGTTAATATATTACAGTA
GGGAGACGAGAACAAGTCATAGAATGTGAACAGTACATGGTGTCTTAAAG
TTCCAGTGTCATTTTTGTTTACGGAAGTCTTTCTTTATGTTCTTTTATAG
CACTATGCTTCTGGCACCTCAGAGAACCTCTGCATTGTAACCGTTTGTGG
AAAATGAAGCATTTATGTGTGACTTATTGAGTTAACAAACTACTTTAAGG
AATAGCCATTAAGAGATTACGTTGATTGGAATGTTGTAACTGCATGATTG
TCACTTATTTTCATGGATGTAATCTCATGAGTTATCACTACTATGTTTCA
GACATACACACACACACACAGAACCTTCTTAAGAAGGAACATCTACCCCA
TTTTCCCTCTCTCCAATTTTGGTTGCCTGATTTAAACTCTGCACAGCTTA
CGSCTGTTAAACATAGCTRAAATTTTCTTTTTATGCTGTTAGTAGTTGGT
ACTATTATTATTATGAATAATTAATATTACATTTATACTATCTTGGTTTT
CAATTTTTCTGTTCTGTAGGATCCTAAAACAGAGAACAATCCCTACCTTG
GGTTCATTTACACTTCATTCCAAGAGAGGGCAACATTCATCTCCCATGGG
AACACAGCCAGGCAAGCCAAAGAGCATGGGGACTTGAAATTGGCTCAGAT
ATGTGGCACCATTGCCTCGGATGAAAAGCGCCATGAAACTGCGTATACAA
AGATTGTGGAAAAGCTGTTTGAGATTGATCCAGATGGCACTGTGTTGGCC
TTAGCTGACATGATGAGGAAAAAGATATCAATGCCCGCCCACTTGATGTA
CGATGGTCAGGATGATAATCTGTTTGATCATTTCTCAGCTGTTGCCCAGA
GGCTTGAGGTGTATACTGCCAGGGATTATGCTGATATATTGGAGTTTTTG
GTTGGAAGATGGAACGTGGAGAAGTTGACTGGTCTTTCTGGTGAGGGACG
CAAGGCACAAGATTTTGTGTGTAAATTGCCACCGAGAATCAGGAGGTTGG
AGGAAAGAGCACAGGGAAGGGCCAAGGCTTCATCCCTTGTTCCATTCAGC
TGGATTTTTGGTAGAGAAGTAAAGGTTTAA

Coding sequence (CDS) from alignment at MDC004190.269:10068..13697+

>MDP0000148102 ID=MDP0000148102; Name=MDP0000148102; organism=Malus x domestica; type=CDS; length=1365bp; location=Sequence derived from: MDC004190.269:10068..13697+ (Malus x domestica
ATGGCTCTGAGTCTGAATTCGATGCTGACCTTCCCGTCTCACAACCTCAC
TGCCAAGTCCCACAATCTCAGATCTCCCAAAATCTTCATGGCCTCCACTC
TTCACTCCTCCACCAAGTTGTCAGATCATTGTTTCTATTGTGCTAGACAC
TTACTCCTTACATTTTCAAGCATTTRGGTGTCATATTTGTTTGTTGATAT
GGTTAGTGGTATTCGTATTGAGATTTACAWTGGTATCCATGATATCCATT
TTTTTCCATGTTCTCAAGTTTTCACCTTTTCAGTTTTAGCTGTTACGCTA
GAGACTGAGAATCTGAAGAAGTCTTTTGGACCTCCACGTGAGTTACATGT
TCAGGTGACTCATTCAATGCCTCCTCAACAGATTGAGATCTTCAAGTCAT
TAGAGGGTTGGGCTGAGAATAACATCTTGGTACACCTAAAGCCTGTTGAG
AAATGTTGGCAACCACAAGATTTTCTTCCGCTCCCTGAGTCAGATGGATT
TGAGGAGCAAGTTAAGGAGTTGAGGGAAAGAGCAAGGGAAATTCCTGATG
ATTACTTTGTTGTGTTGGTTGGAGATATGATCACAGAAGAAGCCCTTCCA
ACGTACCAGACAATGCTTAATACCCTAGACGGAGTTCGGGATGAGACTGG
TGCAAGCCTTACTTCCTGGGCTATTTGGACCAGGGCGTGGACTGCTGAAG
AGAATAGGCATGGTGATCTTCTTAACAAGTATCTTTATCTCTCTGGACGA
GTAGATATGAGACAAATCGAGAAGACAATTCAGTACCTTATTGGATCAGG
AATGGATCCTAAAACAGAGAACAATCCCTACCTTGGGTTCATTTACACTT
CATTCCAAGAGAGGGCAACATTCATCTCCCATGGGAACACAGCCAGGCAA
GCCAAAGAGCATGGGGACTTGAAATTGGCTCAGATATGTGGCACCATTGC
CTCGGATGAAAAGCGCCATGAAACTGCGTATACAAAGATTGTGGAAAAGC
TGTTTGAGATTGATCCAGATGGCACTGTGTTGGCCTTAGCTGACATGATG
AGGAAAAAGATATCAATGCCCGCCCACTTGATGTACGATGGTCAGGATGA
TAATCTGTTTGATCATTTCTCAGCTGTTGCCCAGAGGCTTGAGGTGTATA
CTGCCAGGGATTATGCTGATATATTGGAGTTTTTGGTTGGAAGATGGAAC
GTGGAGAAGTTGACTGGTCTTTCTGGTGAGGGACGCAAGGCACAAGATTT
TGTGTGTAAATTGCCACCGAGAATCAGGAGGTTGGAGGAAAGAGCACAGG
GAAGGGCCAAGGCTTCATCCCTTGTTCCATTCAGCTGGATTTTTGGTAGA
GAAGTAAAGGTTTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005067	Fatty_acid_desaturase-2
IPR009078	Ferritin-like_SF
IPR012348	RNR-like

Vocabulary: **Biological Process**
Term	Definition
GO:0006631	fatty acid metabolic process
GO:0055114	obsolete oxidation-reduction process
GO:0006633	fatty acid biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0045300	stearoyl-[ACP] desaturase activity
GO:0016491	oxidoreductase activity
GO:0046914	transition metal ion binding