MDP0000149162, MDP0000149162 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000149162
Unique NameMDP0000149162
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length297
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000149162_exon_1MDP0000149162_exon_1Malus x domesticaCDS
MDP0000149162_exon_2MDP0000149162_exon_2Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000149162MDP0000149162Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001328Peptidyl-tRNA hydrolaseGENE3D3.40.50.1470no descriptioncoord: 13..49
score: 1.1
IPR001328Peptidyl-tRNA hydrolasePFAMPF01195Pept_tRNA_hydrocoord: 19..49
score: 1.7
IPR001328Peptidyl-tRNA hydrolaseSUPERFAMILY53178Peptidyl-tRNA hydrolase-likecoord: 15..49
score: 9.8

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000149162 ID=MDP0000149162; Name=MDP0000149162; organism=Malus x domestica; type=mRNA; length=297bp
ATGCTTAATCGGTTAAGTCGGCGTTGCTTTTGCACTGCTGCTCCGAGGCC
ATGGCTATTTGTAGGTCTGGGCAATCCCGGCGATAAGTACAAAGGAACTA
GGCACAATGTACTATTCCAGATTACACATTTAGTGTCTACAATTTGAGAT
TTTTAGTTTTCATGTTTGTTGTTTCGATAACAAGTTTCAGATTCCTCCTT
TTTTTGTTTGAAGCAGGCGAGGTTTCAGATGATTGATCCTTTTGCTGGTT
CGCTATACACGGTCCAACGCAAAGCTATACTTGGGCAAGGCATGTAA
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protein sequence of MDP0000149162

>MDP0000149162 ID=MDP0000149162; Name=MDP0000149162; organism=Malus x domestica; type=polypeptide; length=62bp
MLNRLSRRCFCTAAPRPWLFVGLGNPGDKYKGTRHNARFQMIDPFAGSLY
TVQRKAILGQGM
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mRNA from alignment at chr11:360570..360866+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000149162 ID=MDP0000149162; Name=MDP0000149162; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr11:360570..360866+ (Malus x domestica
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mRNA from alignment at MDC010615.394:3935..4231+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000149162 ID=MDP0000149162; Name=MDP0000149162; organism=Malus x domestica; type=mRNA; length=297bp; location=Sequence derived from: MDC010615.394:3935..4231+ (Malus x domestica
ATGCTTAATCGGTTAAGTCGGCGTTGCTTTTGCACTGCTGCTCCGAGGCC
ATGGCTATTTGTAGGTCTGGGCAATCCCGGCGATAAGTACAAAGGAACTA
GGCACAATGTACTATTCCAGATTACACATTTAGTGTCTACAATTTGAGAT
TTTTAGTTTTCATGTTTGTTGTTTCGATAACAAGTTTCAGATTCCTCCTT
TTTTTGTTTGAAGCAGGCGAGGTTTCAGATGATTGATCCTTTTGCTGGTT
CGCTATACACGGTCCAACGCAAAGCTATACTTGGGCAAGGCATGTAA
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Coding sequence (CDS) from alignment at MDC010615.394:3935..4231+

>MDP0000149162 ID=MDP0000149162; Name=MDP0000149162; organism=Malus x domestica; type=CDS; length=189bp; location=Sequence derived from: MDC010615.394:3935..4231+ (Malus x domestica
ATGCTTAATCGGTTAAGTCGGCGTTGCTTTTGCACTGCTGCTCCGAGGCC
ATGGCTATTTGTAGGTCTGGGCAATCCCGGCGATAAGTACAAAGGAACTA
GGCACAATGCGAGGTTTCAGATGATTGATCCTTTTGCTGGTTCGCTATAC
ACGGTCCAACGCAAAGCTATACTTGGGCAAGGCATGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001328Pept_tRNA_hydro
Vocabulary: Molecular Function
TermDefinition
GO:0004045aminoacyl-tRNA hydrolase activity