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Transcript Overview
Name | MDP0000152621 |
Unique Name | MDP0000152621 |
Type | mRNA |
Organism | Malus x domestica (Apple) |
Sequence length | 3074 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
MDP0000152621 | MDP0000152621 | Malus x domestica | polypeptide |
InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000719 | Protein kinase, catalytic domain | PFAM | PF00069 | Pkinase | coord: 27..288 score: 5.2 |
IPR000719 | Protein kinase, catalytic domain | PROFILE | PS50011 | PROTEIN_KINASE_DOM | coord: 24..288 score: 39 |
IPR002290 | Serine/threonine- / dual-specificity protein kinase, catalytic domain | SMART | SM00220 | Serine/Threonine protein kinases, catalytic | coord: 24..288 score: 2.5 |
IPR008271 | Serine/threonine-protein kinase, active site | PROSITE | PS00108 | PROTEIN_KINASE_ST | coord: 148..160 score |
IPR011009 | Protein kinase-like domain | SUPERFAMILY | 56112 | Protein kinase-like (PK-like) | coord: 14..289 score: 1.6 |
IPR020635 | Tyrosine-protein kinase, catalytic domain | SMART | SM00219 | Tyrosine kinase, catalytic domain | coord: 24..270 score: 5.5 |
None | No IPR available | COIL | coil | coiled-coil | coord: 588..609 score |
None | No IPR available | GENE3D | 1.10.510.10 | no description | coord: 625..638 score: 4.2 |
None | No IPR available | GENE3D | 3.30.200.20 | no description | coord: 17..124 score: 9.7 |
None | No IPR available | PANTHER | PTHR13902 | FAMILY NOT NAMED | coord: 8..446 score: 2.4e |
None | No IPR available | PANTHER | PTHR13902:SF38 | SUBFAMILY NOT NAMED | coord: 8..446 score: 2.4e |
None | No IPR available | SEG | seg | seg | coord: 7..17 score: NAcoord: 317..336 score: NAcoord: 546..557 score |
None | No IPR available | SEG | seg | seg | coord: 71..92 score |
None | No IPR available | SEG | seg | seg | coord: 23..36 score |
None | No IPR available | SEG | seg | seg | coord: 36..49 score |
None | No IPR available | SEG | seg | seg | coord: 36..47 score |
Sequences
The
following sequences are available for this feature:
mRNA sequence >MDP0000152621 ID=MDP0000152621; Name=MDP0000152621; organism=Malus x domestica; type=mRNA; length=3074bp ATGAATGGTGGTACAGCTTCTGAAGAAGAATTCTCTGAGTTTGTAGAGGT TGATCCTACTGGAAGATATGGAAGAGTAAGCTCCTCTTCTCCTCTCCTCT AATTTGTTTTCAATTTTCATGACTTTCTGCTATTTGGGTTAGTTTATAAT TTTGTTTTTAACTCCAAGATTGCTGTTTTTKTTTTTGCAGTACAACGAAG TTCTTGGCAAAGGAGCTTCAAAAACAGTGTATGGTTTCAATACCCTTTTA AAATTAATGCATAAGTTTGACTTTTTATGTGGTTTAATCAAAACCCCTCT CAAAATACTGCAGAAGTTTGAATTTTTATGTGGTTTGTTCAGTCAAAACC CTTTTGAATTTATGCACAAGTATATATTTTTATGTGGTTAAATTCAAAAC CTTTTTCAAATTAATGCCCAAGTTCGAATTTTTGTGCAAAAAAATGTATT TTTGTTCATAATTTGTGTTGGTTTTTGCAGATATAGGGCCTTTGATGAGT ATGAAGGGATTGAAGTGGCATGGAATCAGGTGAAGCTTTATGATTTTCTG AGAAACCCTGAGGATCTCGAGAGGCTATACCGCGAAATTCATCTACTCAA GACCTTGAAACACAACAATATCATGAAGTTTTACACCTCTTGGGTTGATA CTACCAACAGAAATATCAACTTTGTTACTGAGATGTTTACTTCTGGTACT CTCAGGCAGTAAGTTTCAGTTTCACCCTTTGTTTTCTGGTCCGAGAATGT AAATTTTTTGTTGATTATTCAATGTGGGGGGTTTTTTTTTTTTTATTGGT TTTTGTGTGTAGGTATAGGCTAAAACACAAGAGAGTTAATATCAGGGCAG TGAAGCATTGGTGCAGGCAGATTTTGAAAGGGCTTCTCTATCTTCACAGC CATGACCCTCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTCAT CAATGGGAACCAAGGTGAGGTCAAGATTGGTGATCTTGGCCTCGCTGCTG TCCTCCGTAAATCTCACGCTGATCGTTGTGTTGGTAAGTCATTTCGAGGT GCTTGAATGTCTTTTCAGTGATTAGAATATCTAGAATTGCTTGACAATTT GAGGTTCTTCAAGCATATGCCAGTGTTCATAACGAACTTCCGGATATTTG TTTTTCGCACATGAACTAATTCGATAGAGTTTTTACTCTTTGAGATCATC TCATCTTTGTCTTGTTTCTCTCTCTTTCCCTTTGGTTTCTTTCCGCTTGC TCAGGAACACCGGAGTTCATGGCTCCAGAGGTTTACGAAGAGGAATACAA TGAGTTGGTTGACATTTATTCTTTTGGGATGTGCATCTTGGAGATGGTTA CCTTTGAATATCCATATAGCGAATGCAATAATCCTGCTCAAATCTATAAG AAAGTTATCACTGTAGGAACTCTGAACTCTCAAGTTACTTTTCGAGTTGG TTTTTGTTTCTTCCAAATGATTTATGTATTTAATTTTTGATATAGGGGAA AAAGCCAGAAGCCCTATTCAAGGTGAAGGATCCTGAGGTGCGGCGTTTTG TTGAGAAGTGCTTAGTGACYGTGTCTYGTAGGCTTTCTGCTAGGGAGCTT TTGAGAGACCCCTTTCTCCAGGTTGATGACTACGGATACAATTTAAGGCC AACAGAGGATCAAAGGGATATGTATGAAATAGGGCCTCTCTTAAGACAAC CTCACTCTTCACTTCATCAAAGTAACAGCTCTTTGAGCAACGGGCATGGC AATTATCTTGGTTACGAAACAGAAAATGATTTGGACTACAATCCGATTGA TTATGGATTGAGCGAAATTGATCTCTTCGCTTGTCAAGAGGATGAGCATT TTGGAGATGTTGACCTCACAATCAAAGGGAGGCGGAGAGAAGACGATGAC ATCTTTTTAAGGCTCAGAATTGCAGATAAAGAAGGTAAAAGTTTCAGTTT AACTGCATACATGTGCTGTTATGTCGTGTAAAATTCTGAAATGAAACTAT ACGTTCCTTTTCTCTGCAGGCCGCATCCGAAACATCTATTTCCCTTTTGA TACTGAGAATGACACGGCATTGAGTGTTGCCAGAGAGATGGTTTCTGAGC TTGATATCACAGACCAAGATGTTACAAAAATAGCAGAGATGATTGATGGT GAAATTACTACCTTGGTACCGGAGTGGATTAAGGGACGTGGCATAGAAGA AATTCCCCATTGCAATAATGCAAGTTTTTGTCAAAATTGTGCTTCGTATG GTTCCATTTTGGATTATGCATCACCGGATATTCCTGGTGTCAAGCACCTC CAAGTTCTTCAGTGCTCAAAACACGGATCAGCTGCTGTCCATGGACGTTT CGAAGAGATTACATACCAAGTTGAAGGCGCAGAGCGTAGTCTTACAGGTG CACCTAGAACATCAAACCATTCTGATGGCTTGCACTATGCTGATATCTGG GCTCAAAGAGAAGGACCGGAATTAAGCTCACAAGGTTCAGGAGATTCGAG TGATATCCAATGCAACGAAAATCATGAAACATTGGATGTAACAAACTTTG GAAAGGAAGAGAGAATTATAATGATGGACAATCAGAGTGATTCGAAAGCA AGAAATTCTATCTCAGAGAAACTTTCAGCCACTTCTGATCGGTTAGATGA TTATGAGAATGAGCTTCGCCAAGAACTGCGATGGCTCAAAGCAACGTATC AAATGCAGTTGAGGGAGATTAGGGACCAACAGCTTGGAGCTAGACCGAAA GCTTCAAGCCTAATTCCAAATTCAAATCACTCAGAGAACAGGGAGACAAA TGGAGCTTCAATGTCCTTGGCTTCGCCCCAGCGGACAAAAGAAAACAAAA AACCTTCCTTGAAATCCTTTTCCTCGGGGAAGCATTTCACATATTTTCCA GTGGATGCTGAAAAGAAACATTTGGCAAGCCCTGGTGTCCAAAATCACGA GGCATTTGATGGGGCTTACAGTCCTGAACAAATCATTACTGCAAAGAGTT TCTATATTGGTGCATTGCTTCCACACTCTCTGCACCGGGCAACTTCTCTA CCGGTCGATGCTATAGATGTTTAG back to topprotein sequence of MDP0000152621 >MDP0000152621 ID=MDP0000152621; Name=MDP0000152621; organism=Malus x domestica; type=polypeptide; length=744bp MNGGTASEEEFSEFVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYEGIEV AWNQVKLYDFLRNPEDLERLYREIHLLKTLKHNNIMKFYTSWVDTTNRNI NFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILKGLLYLHSHDPPVIH RDLKCDNIFINGNQGEVKIGDLGLAAVLRKSHADRCVGTPEFMAPEVYEE EYNELVDIYSFGMCILEMVTFEYPYSECNNPAQIYKKVITVGTLNSQGKK PEALFKVKDPEVRRFVEKCLVTVSXRLSARELLRDPFLQVDDYGYNLRPT EDQRDMYEIGPLLRQPHSSLHQSNSSLSNGHGNYLGYETENDLDYNPIDY GLSEIDLFACQEDEHFGDVDLTIKGRRREDDDIFLRLRIADKEGRIRNIY FPFDTENDTALSVAREMVSELDITDQDVTKIAEMIDGEITTLVPEWIKGR GIEEIPHCNNASFCQNCASYGSILDYASPDIPGVKHLQVLQCSKHGSAAV HGRFEEITYQVEGAERSLTGAPRTSNHSDGLHYADIWAQREGPELSSQGS GDSSDIQCNENHETLDVTNFGKEERIIMMDNQSDSKARNSISEKLSATSD RLDDYENELRQELRWLKATYQMQLREIRDQQLGARPKASSLIPNSNHSEN RETNGASMSLASPQRTKENKKPSLKSFSSGKHFTYFPVDAEKKHLASPGV QNHEAFDGAYSPEQIITAKSFYIGALLPHSLHRATSLPVDAIDV back to topmRNA from alignment at chr13:18719788..18722861+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000152621 ID=MDP0000152621; Name=MDP0000152621; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:18719788..18722861+ (Malus x domestica
back to topmRNA from alignment at MDC017705.272:2430..5503+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000152621 ID=MDP0000152621; Name=MDP0000152621; organism=Malus x domestica; type=mRNA; length=3074bp; location=Sequence derived from: MDC017705.272:2430..5503+ (Malus x domestica ATGAATGGTGGTACAGCTTCTGAAGAAGAATTCTCTGAGTTTGTAGAGGT
TGATCCTACTGGAAGATATGGAAGAGTAAGCTCCTCTTCTCCTCTCCTCT
AATTTGTTTTCAATTTTCATGACTTTCTGCTATTTGGGTTAGTTTATAAT
TTTGTTTTTAACTCCAAGATTGCTGTTTTTKTTTTTGCAGTACAACGAAG
TTCTTGGCAAAGGAGCTTCAAAAACAGTGTATGGTTTCAATACCCTTTTA
AAATTAATGCATAAGTTTGACTTTTTATGTGGTTTAATCAAAACCCCTCT
CAAAATACTGCAGAAGTTTGAATTTTTATGTGGTTTGTTCAGTCAAAACC
CTTTTGAATTTATGCACAAGTATATATTTTTATGTGGTTAAATTCAAAAC
CTTTTTCAAATTAATGCCCAAGTTCGAATTTTTGTGCAAAAAAATGTATT
TTTGTTCATAATTTGTGTTGGTTTTTGCAGATATAGGGCCTTTGATGAGT
ATGAAGGGATTGAAGTGGCATGGAATCAGGTGAAGCTTTATGATTTTCTG
AGAAACCCTGAGGATCTCGAGAGGCTATACCGCGAAATTCATCTACTCAA
GACCTTGAAACACAACAATATCATGAAGTTTTACACCTCTTGGGTTGATA
CTACCAACAGAAATATCAACTTTGTTACTGAGATGTTTACTTCTGGTACT
CTCAGGCAGTAAGTTTCAGTTTCACCCTTTGTTTTCTGGTCCGAGAATGT
AAATTTTTTGTTGATTATTCAATGTGGGGGGTTTTTTTTTTTTTATTGGT
TTTTGTGTGTAGGTATAGGCTAAAACACAAGAGAGTTAATATCAGGGCAG
TGAAGCATTGGTGCAGGCAGATTTTGAAAGGGCTTCTCTATCTTCACAGC
CATGACCCTCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTCAT
CAATGGGAACCAAGGTGAGGTCAAGATTGGTGATCTTGGCCTCGCTGCTG
TCCTCCGTAAATCTCACGCTGATCGTTGTGTTGGTAAGTCATTTCGAGGT
GCTTGAATGTCTTTTCAGTGATTAGAATATCTAGAATTGCTTGACAATTT
GAGGTTCTTCAAGCATATGCCAGTGTTCATAACGAACTTCCGGATATTTG
TTTTTCGCACATGAACTAATTCGATAGAGTTTTTACTCTTTGAGATCATC
TCATCTTTGTCTTGTTTCTCTCTCTTTCCCTTTGGTTTCTTTCCGCTTGC
TCAGGAACACCGGAGTTCATGGCTCCAGAGGTTTACGAAGAGGAATACAA
TGAGTTGGTTGACATTTATTCTTTTGGGATGTGCATCTTGGAGATGGTTA
CCTTTGAATATCCATATAGCGAATGCAATAATCCTGCTCAAATCTATAAG
AAAGTTATCACTGTAGGAACTCTGAACTCTCAAGTTACTTTTCGAGTTGG
TTTTTGTTTCTTCCAAATGATTTATGTATTTAATTTTTGATATAGGGGAA
AAAGCCAGAAGCCCTATTCAAGGTGAAGGATCCTGAGGTGCGGCGTTTTG
TTGAGAAGTGCTTAGTGACYGTGTCTYGTAGGCTTTCTGCTAGGGAGCTT
TTGAGAGACCCCTTTCTCCAGGTTGATGACTACGGATACAATTTAAGGCC
AACAGAGGATCAAAGGGATATGTATGAAATAGGGCCTCTCTTAAGACAAC
CTCACTCTTCACTTCATCAAAGTAACAGCTCTTTGAGCAACGGGCATGGC
AATTATCTTGGTTACGAAACAGAAAATGATTTGGACTACAATCCGATTGA
TTATGGATTGAGCGAAATTGATCTCTTCGCTTGTCAAGAGGATGAGCATT
TTGGAGATGTTGACCTCACAATCAAAGGGAGGCGGAGAGAAGACGATGAC
ATCTTTTTAAGGCTCAGAATTGCAGATAAAGAAGGTAAAAGTTTCAGTTT
AACTGCATACATGTGCTGTTATGTCGTGTAAAATTCTGAAATGAAACTAT
ACGTTCCTTTTCTCTGCAGGCCGCATCCGAAACATCTATTTCCCTTTTGA
TACTGAGAATGACACGGCATTGAGTGTTGCCAGAGAGATGGTTTCTGAGC
TTGATATCACAGACCAAGATGTTACAAAAATAGCAGAGATGATTGATGGT
GAAATTACTACCTTGGTACCGGAGTGGATTAAGGGACGTGGCATAGAAGA
AATTCCCCATTGCAATAATGCAAGTTTTTGTCAAAATTGTGCTTCGTATG
GTTCCATTTTGGATTATGCATCACCGGATATTCCTGGTGTCAAGCACCTC
CAAGTTCTTCAGTGCTCAAAACACGGATCAGCTGCTGTCCATGGACGTTT
CGAAGAGATTACATACCAAGTTGAAGGCGCAGAGCGTAGTCTTACAGGTG
CACCTAGAACATCAAACCATTCTGATGGCTTGCACTATGCTGATATCTGG
GCTCAAAGAGAAGGACCGGAATTAAGCTCACAAGGTTCAGGAGATTCGAG
TGATATCCAATGCAACGAAAATCATGAAACATTGGATGTAACAAACTTTG
GAAAGGAAGAGAGAATTATAATGATGGACAATCAGAGTGATTCGAAAGCA
AGAAATTCTATCTCAGAGAAACTTTCAGCCACTTCTGATCGGTTAGATGA
TTATGAGAATGAGCTTCGCCAAGAACTGCGATGGCTCAAAGCAACGTATC
AAATGCAGTTGAGGGAGATTAGGGACCAACAGCTTGGAGCTAGACCGAAA
GCTTCAAGCCTAATTCCAAATTCAAATCACTCAGAGAACAGGGAGACAAA
TGGAGCTTCAATGTCCTTGGCTTCGCCCCAGCGGACAAAAGAAAACAAAA
AACCTTCCTTGAAATCCTTTTCCTCGGGGAAGCATTTCACATATTTTCCA
GTGGATGCTGAAAAGAAACATTTGGCAAGCCCTGGTGTCCAAAATCACGA
GGCATTTGATGGGGCTTACAGTCCTGAACAAATCATTACTGCAAAGAGTT
TCTATATTGGTGCATTGCTTCCACACTCTCTGCACCGGGCAACTTCTCTA
CCGGTCGATGCTATAGATGTTTAG back to topCoding sequence (CDS) from alignment at MDC017705.272:2430..5503+ >MDP0000152621 ID=MDP0000152621; Name=MDP0000152621; organism=Malus x domestica; type=CDS; length=2235bp; location=Sequence derived from: MDC017705.272:2430..5503+ (Malus x domestica ATGAATGGTGGTACAGCTTCTGAAGAAGAATTCTCTGAGTTTGTAGAGGT TGATCCTACTGGAAGATATGGAAGATACAACGAAGTTCTTGGCAAAGGAG CTTCAAAAACAGTATATAGGGCCTTTGATGAGTATGAAGGGATTGAAGTG GCATGGAATCAGGTGAAGCTTTATGATTTTCTGAGAAACCCTGAGGATCT CGAGAGGCTATACCGCGAAATTCATCTACTCAAGACCTTGAAACACAACA ATATCATGAAGTTTTACACCTCTTGGGTTGATACTACCAACAGAAATATC AACTTTGTTACTGAGATGTTTACTTCTGGTACTCTCAGGCAGTATAGGCT AAAACACAAGAGAGTTAATATCAGGGCAGTGAAGCATTGGTGCAGGCAGA TTTTGAAAGGGCTTCTCTATCTTCACAGCCATGACCCTCCTGTGATCCAC AGAGATCTCAAGTGTGACAACATTTTCATCAATGGGAACCAAGGTGAGGT CAAGATTGGTGATCTTGGCCTCGCTGCTGTCCTCCGTAAATCTCACGCTG ATCGTTGTGTTGGAACACCGGAGTTCATGGCTCCAGAGGTTTACGAAGAG GAATACAATGAGTTGGTTGACATTTATTCTTTTGGGATGTGCATCTTGGA GATGGTTACCTTTGAATATCCATATAGCGAATGCAATAATCCTGCTCAAA TCTATAAGAAAGTTATCACTGTAGGAACTCTGAACTCTCAAGGGAAAAAG CCAGAAGCCCTATTCAAGGTGAAGGATCCTGAGGTGCGGCGTTTTGTTGA GAAGTGCTTAGTGACYGTGTCTYGTAGGCTTTCTGCTAGGGAGCTTTTGA GAGACCCCTTTCTCCAGGTTGATGACTACGGATACAATTTAAGGCCAACA GAGGATCAAAGGGATATGTATGAAATAGGGCCTCTCTTAAGACAACCTCA CTCTTCACTTCATCAAAGTAACAGCTCTTTGAGCAACGGGCATGGCAATT ATCTTGGTTACGAAACAGAAAATGATTTGGACTACAATCCGATTGATTAT GGATTGAGCGAAATTGATCTCTTCGCTTGTCAAGAGGATGAGCATTTTGG AGATGTTGACCTCACAATCAAAGGGAGGCGGAGAGAAGACGATGACATCT TTTTAAGGCTCAGAATTGCAGATAAAGAAGGCCGCATCCGAAACATCTAT TTCCCTTTTGATACTGAGAATGACACGGCATTGAGTGTTGCCAGAGAGAT GGTTTCTGAGCTTGATATCACAGACCAAGATGTTACAAAAATAGCAGAGA TGATTGATGGTGAAATTACTACCTTGGTACCGGAGTGGATTAAGGGACGT GGCATAGAAGAAATTCCCCATTGCAATAATGCAAGTTTTTGTCAAAATTG TGCTTCGTATGGTTCCATTTTGGATTATGCATCACCGGATATTCCTGGTG TCAAGCACCTCCAAGTTCTTCAGTGCTCAAAACACGGATCAGCTGCTGTC CATGGACGTTTCGAAGAGATTACATACCAAGTTGAAGGCGCAGAGCGTAG TCTTACAGGTGCACCTAGAACATCAAACCATTCTGATGGCTTGCACTATG CTGATATCTGGGCTCAAAGAGAAGGACCGGAATTAAGCTCACAAGGTTCA GGAGATTCGAGTGATATCCAATGCAACGAAAATCATGAAACATTGGATGT AACAAACTTTGGAAAGGAAGAGAGAATTATAATGATGGACAATCAGAGTG ATTCGAAAGCAAGAAATTCTATCTCAGAGAAACTTTCAGCCACTTCTGAT CGGTTAGATGATTATGAGAATGAGCTTCGCCAAGAACTGCGATGGCTCAA AGCAACGTATCAAATGCAGTTGAGGGAGATTAGGGACCAACAGCTTGGAG CTAGACCGAAAGCTTCAAGCCTAATTCCAAATTCAAATCACTCAGAGAAC AGGGAGACAAATGGAGCTTCAATGTCCTTGGCTTCGCCCCAGCGGACAAA AGAAAACAAAAAACCTTCCTTGAAATCCTTTTCCTCGGGGAAGCATTTCA CATATTTTCCAGTGGATGCTGAAAAGAAACATTTGGCAAGCCCTGGTGTC CAAAATCACGAGGCATTTGATGGGGCTTACAGTCCTGAACAAATCATTAC TGCAAAGAGTTTCTATATTGGTGCATTGCTTCCACACTCTCTGCACCGGG CAACTTCTCTACCGGTCGATGCTATAGATGTTTAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0006468 | protein phosphorylation |
|