MDP0000156548, MDP0000156548 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000156548
Unique Name	MDP0000156548
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1011

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr16	chromosome	chr16:2335861..2336871 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC001075.164	contig	MDC001075.164:7084..8094 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000156548_exon_1	MDP0000156548_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000156548	MDP0000156548	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 49..58 score: NAcoord: 90..101 score: NAcoord: 136..147 score: NAcoord: 161..175 score: NAcoord: 219..226 score: NAcoord: 277..296 score
None	No IPR available	SEG	seg	seg	coord: 49..58 score
None	No IPR available	SEG	seg	seg	coord: 9..14 score
None	No IPR available	SEG	seg	seg	coord: 52..66 score
None	No IPR available	SEG	seg	seg	coord: 7..35 score: NAcoord: 67..76 score
None	No IPR available	SEG	seg	seg	coord: 3..15 score: NAcoord: 21..27 score
None	No IPR available	SEG	seg	seg	coord: 1..17 score: NAcoord: 23..34 score
None	No IPR available	SEG	seg	seg	coord: 33..42 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:2335861..2336871-
mRNA from alignment at MDC001075.164:7084..8094-
coding sequence from alignment at MDC001075.164:7084..8094-

mRNA sequence

>MDP0000156548 ID=MDP0000156548; Name=MDP0000156548; organism=Malus x domestica; type=mRNA; length=1011bp
ATGTCTATTATTAGTACAGGGGTGCTCTCGGCAGACCCTGGAGCTGATAA
GATACACAAGAAATCGTTCCACCACAGGAACGACTCCGGGGAGCTCGATG
TTTTCGAAGCTGCAAGGTACTTCTCAGGATACATTGAAGCTCCCAGCAGC
CATAACAACAACARCAGCAGCAACACTTCGGCATTTTCGCAGAGGATGAT
GAAAGAAGACAGATCTTCRTGGAGAGGAGGCAGAATCAGCCTTGATATGC
CTATAAGACACATGCTCCATCATCCTCAGCAAAACCCTAATCACCATAAC
CACGTGGCGGTGGAAAAGCAAAACAACATCAAAGACAAGAAATACAAGCA
GCCGAGCTCTCCAGGCGGGAGACTAGCCAGCTTCTTGAATTCTCTATTCA
ACCAATCAGCATCCAAGAAGAAGAAGTCAAAATCCAGCGCCACGCAGTCC
ATGAAAGACGAGGAAGAGAGCCCAGGTGGGAGGCGGARGAGGAGGAGCAG
CATTAGTCATTTTCGAAGCTCGAGCACCACGGATGCCAAGTCSGTGTATT
CCTCATCGAGTTCAGGGTTTCGAACACCTCCTCCTTATAGCCATGCACAA
ACGGCAGCCTCCAAGAGCTACAAAGATTTGAGAAGCTATTCGGATAATCA
CAAGCAGCAATATCAACACCAGCAGCAAGCGGTTTCTTTATCGAAGTACA
ATACGAACTTCGATGASAAAAGATCATCAAACAAAGAACTGACTTGGTTG
GATCATGAGAAGTTCAAATTATCGGAGAAGTATAAGATTAGTTCCGAGCT
AGATCACAAGGGTTTGCTCAAAAGGCTAAGTGAGGTTGTTGACGACGAGG
AGGAAGATGAAGGTGCAGAGAGTGATTCGAGCTCTGATCTTTTCGAGCTG
CAGAATTATGACCTGGGTTTTTACTCGAGCGGCTTGCCTGTGTACGAAAC
TACAAATGTGGACAACATCAAGATCAGATCAGGAACACCAATTTCCAATG
CTTCGTCCTAA

protein sequence of MDP0000156548

>MDP0000156548 ID=MDP0000156548; Name=MDP0000156548; organism=Malus x domestica; type=polypeptide; length=336bp
MSIISTGVLSADPGADKIHKKSFHHRNDSGELDVFEAARYFSGYIEAPSS
HNNNXSSNTSAFSQRMMKEDRSSWRGGRISLDMPIRHMLHHPQQNPNHHN
HVAVEKQNNIKDKKYKQPSSPGGRLASFLNSLFNQSASKKKKSKSSATQS
MKDEEESPGGRRXRRSSISHFRSSSTTDAKSVYSSSSSGFRTPPPYSHAQ
TAASKSYKDLRSYSDNHKQQYQHQQQAVSLSKYNTNFDXKRSSNKELTWL
DHEKFKLSEKYKISSELDHKGLLKRLSEVVDDEEEDEGAESDSSSDLFEL
QNYDLGFYSSGLPVYETTNVDNIKIRSGTPISNASS

mRNA from alignment at chr16:2335861..2336871-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000156548 ID=MDP0000156548; Name=MDP0000156548; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr16:2335861..2336871- (Malus x domestica

mRNA from alignment at MDC001075.164:7084..8094-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000156548 ID=MDP0000156548; Name=MDP0000156548; organism=Malus x domestica; type=mRNA; length=1011bp; location=Sequence derived from: MDC001075.164:7084..8094- (Malus x domestica
ATGTCTATTATTAGTACAGGGGTGCTCTCGGCAGACCCTGGAGCTGATAA
GATACACAAGAAATCGTTCCACCACAGGAACGACTCCGGGGAGCTCGATG
TTTTCGAAGCTGCAAGGTACTTCTCAGGATACATTGAAGCTCCCAGCAGC
CATAACAACAACARCAGCAGCAACACTTCGGCATTTTCGCAGAGGATGAT
GAAAGAAGACAGATCTTCRTGGAGAGGAGGCAGAATCAGCCTTGATATGC
CTATAAGACACATGCTCCATCATCCTCAGCAAAACCCTAATCACCATAAC
CACGTGGCGGTGGAAAAGCAAAACAACATCAAAGACAAGAAATACAAGCA
GCCGAGCTCTCCAGGCGGGAGACTAGCCAGCTTCTTGAATTCTCTATTCA
ACCAATCAGCATCCAAGAAGAAGAAGTCAAAATCCAGCGCCACGCAGTCC
ATGAAAGACGAGGAAGAGAGCCCAGGTGGGAGGCGGARGAGGAGGAGCAG
CATTAGTCATTTTCGAAGCTCGAGCACCACGGATGCCAAGTCSGTGTATT
CCTCATCGAGTTCAGGGTTTCGAACACCTCCTCCTTATAGCCATGCACAA
ACGGCAGCCTCCAAGAGCTACAAAGATTTGAGAAGCTATTCGGATAATCA
CAAGCAGCAATATCAACACCAGCAGCAAGCGGTTTCTTTATCGAAGTACA
ATACGAACTTCGATGASAAAAGATCATCAAACAAAGAACTGACTTGGTTG
GATCATGAGAAGTTCAAATTATCGGAGAAGTATAAGATTAGTTCCGAGCT
AGATCACAAGGGTTTGCTCAAAAGGCTAAGTGAGGTTGTTGACGACGAGG
AGGAAGATGAAGGTGCAGAGAGTGATTCGAGCTCTGATCTTTTCGAGCTG
CAGAATTATGACCTGGGTTTTTACTCGAGCGGCTTGCCTGTGTACGAAAC
TACAAATGTGGACAACATCAAGATCAGATCAGGAACACCAATTTCCAATG
CTTCGTCCTAA

Coding sequence (CDS) from alignment at MDC001075.164:7084..8094-

>MDP0000156548 ID=MDP0000156548; Name=MDP0000156548; organism=Malus x domestica; type=CDS; length=1011bp; location=Sequence derived from: MDC001075.164:7084..8094- (Malus x domestica
ATGTCTATTATTAGTACAGGGGTGCTCTCGGCAGACCCTGGAGCTGATAA
GATACACAAGAAATCGTTCCACCACAGGAACGACTCCGGGGAGCTCGATG
TTTTCGAAGCTGCAAGGTACTTCTCAGGATACATTGAAGCTCCCAGCAGC
CATAACAACAACARCAGCAGCAACACTTCGGCATTTTCGCAGAGGATGAT
GAAAGAAGACAGATCTTCRTGGAGAGGAGGCAGAATCAGCCTTGATATGC
CTATAAGACACATGCTCCATCATCCTCAGCAAAACCCTAATCACCATAAC
CACGTGGCGGTGGAAAAGCAAAACAACATCAAAGACAAGAAATACAAGCA
GCCGAGCTCTCCAGGCGGGAGACTAGCCAGCTTCTTGAATTCTCTATTCA
ACCAATCAGCATCCAAGAAGAAGAAGTCAAAATCCAGCGCCACGCAGTCC
ATGAAAGACGAGGAAGAGAGCCCAGGTGGGAGGCGGARGAGGAGGAGCAG
CATTAGTCATTTTCGAAGCTCGAGCACCACGGATGCCAAGTCSGTGTATT
CCTCATCGAGTTCAGGGTTTCGAACACCTCCTCCTTATAGCCATGCACAA
ACGGCAGCCTCCAAGAGCTACAAAGATTTGAGAAGCTATTCGGATAATCA
CAAGCAGCAATATCAACACCAGCAGCAAGCGGTTTCTTTATCGAAGTACA
ATACGAACTTCGATGASAAAAGATCATCAAACAAAGAACTGACTTGGTTG
GATCATGAGAAGTTCAAATTATCGGAGAAGTATAAGATTAGTTCCGAGCT
AGATCACAAGGGTTTGCTCAAAAGGCTAAGTGAGGTTGTTGACGACGAGG
AGGAAGATGAAGGTGCAGAGAGTGATTCGAGCTCTGATCTTTTCGAGCTG
CAGAATTATGACCTGGGTTTTTACTCGAGCGGCTTGCCTGTGTACGAAAC
TACAAATGTGGACAACATCAAGATCAGATCAGGAACACCAATTTCCAATG
CTTCGTCCTAA