MDP0000167315, MDP0000167315 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000167315
Unique Name	MDP0000167315
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	4732

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr8	chromosome	chr8:3348578..3353309 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC003763.376	contig	MDC003763.376:7679..12410 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000167315_exon_1	MDP0000167315_exon_1	Malus x domestica	CDS
MDP0000167315_exon_2	MDP0000167315_exon_2	Malus x domestica	CDS
MDP0000167315_exon_3	MDP0000167315_exon_3	Malus x domestica	CDS
MDP0000167315_exon_4	MDP0000167315_exon_4	Malus x domestica	CDS
MDP0000167315_exon_5	MDP0000167315_exon_5	Malus x domestica	CDS
MDP0000167315_exon_6	MDP0000167315_exon_6	Malus x domestica	CDS
MDP0000167315_exon_7	MDP0000167315_exon_7	Malus x domestica	CDS
MDP0000167315_exon_8	MDP0000167315_exon_8	Malus x domestica	CDS
MDP0000167315_exon_9	MDP0000167315_exon_9	Malus x domestica	CDS
MDP0000167315_exon_10	MDP0000167315_exon_10	Malus x domestica	CDS
MDP0000167315_exon_11	MDP0000167315_exon_11	Malus x domestica	CDS
MDP0000167315_exon_12	MDP0000167315_exon_12	Malus x domestica	CDS
MDP0000167315_exon_13	MDP0000167315_exon_13	Malus x domestica	CDS
MDP0000167315_exon_14	MDP0000167315_exon_14	Malus x domestica	CDS
MDP0000167315_exon_15	MDP0000167315_exon_15	Malus x domestica	CDS
MDP0000167315_exon_16	MDP0000167315_exon_16	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000167315	MDP0000167315	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000195	Rab-GTPase-TBC domain	PFAM	PF00566	RabGAP-TBC	coord: 426..655 score: 1
IPR000195	Rab-GTPase-TBC domain	SMART	SM00164	Domain in Tre-2, BUB2p, and Cdc16p. Probable	coord: 420..658 score: 2
IPR000195	Rab-GTPase-TBC domain	PROFILE	PS50086	TBC_RABGAP	coord: 423..633 score: 38
IPR000195	Rab-GTPase-TBC domain	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 398..593 score: 7.7e-53coord: 568..690 score: 7.5
IPR021935	Domain of unknown function DUF3548	PFAM	PF12068	DUF3548	coord: 170..251 score: 6.5
None	No IPR available	GENE3D	1.10.8.270	no description	coord: 417..559 score: 3.5
None	No IPR available	PANTHER	PTHR22957	FAMILY NOT NAMED	coord: 46..700 score: 2.3e
None	No IPR available	PANTHER	PTHR22957:SF34	TBC1 DOMAIN FAMILY MEMBER 15, 17	coord: 46..700 score: 2.3e
None	No IPR available	SEG	seg	seg	coord: 72..83 score: NAcoord: 89..106 score
None	No IPR available	SEG	seg	seg	coord: 12..23 score: NAcoord: 33..44 score
None	No IPR available	SEG	seg	seg	coord: 2..12 score: NAcoord: 17..38 score: NAcoord: 43..59 score
None	No IPR available	SEG	seg	seg	coord: 6..20 score: NAcoord: 32..42 score: NAcoord: 48..63 score
None	No IPR available	SEG	seg	seg	coord: 7..31 score: NAcoord: 36..45 score
None	No IPR available	SEG	seg	seg	coord: 47..57 score
None	No IPR available	SEG	seg	seg	coord: 38..51 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:3348578..3353309-
mRNA from alignment at MDC003763.376:7679..12410-
coding sequence from alignment at MDC003763.376:7679..12410-

mRNA sequence

>MDP0000167315 ID=MDP0000167315; Name=MDP0000167315; organism=Malus x domestica; type=mRNA; length=4732bp
ATGTCAGAGCGCAACYGATATGATCTAACCAACGGTCGGATAGATCTCCA
CTAACCAACGGATATGATCTAAAACAATACTTACAACAAATTCACCTGAT
CAGAGCCCAAGCTATCCGAACACGAGGAAAGACCCTCATTACGCGCCATA
CCGCTTACGTGGACGCCCCTCACCATAAGAGTTCTCCACGGCGACCCCAC
TGCCTTGCCCACTAAGAATTCTCTCTCTCCTCCGCTTTCTTTCTATCTGC
AATCGTCGGCGATGCAAGAACCAGAGCTCCACGATCTCTCCGACGACGCC
GATTACGCCGCGTCGCTGCAACACGTAAGCGTTTCTCCGGCAACGCCAAC
TTTAATTCATCGTTTCTGAGTGTTTAGGGTTAATTATTTTGGGGATTTTG
GTCGGTTTGATTTGGATCAGGGCTCGGCGAGCATGATGCGGAGCGACAGC
GGGAAGCACAGCTCGTCGAGCGAGCACGACGGCGCCGAGGTGGTTTTCTT
AAAAGACAATGTCACCATCCACCCTACTCAGTTCGCCTCCGAGAGGATTA
GTGGAAGATTGAGGCTAATTAAGCACGGTTCTTCCTTATTCATGGTATTA
TTCATTAATTAATGATTGATTAATTAAAGATTATCGCTTGATTACTGATA
TTTCTGTTAATTATTGACGTGTTTGGTACGGTTTAATTTGTAGACATGGA
TTCCGTACAACGGGCAAAACTCGAACGCTAGGGTGTCTGAGAAAGGTTTT
GTAGATTTAGACCTTGAATTTTAGTTGTTAAATTTGTTGAATTTATTTAT
TTAWTTWWTTTTWTTTKTTTTTGTGGTGGTGTAGATAGGAATCTTTATAC
CATAAGGCCAGTGCCATTAACGGAGGTCCGGTCGATTCGCCGCCACACTC
CGGCGCTTGGATGGCAGTACATTATCATCGTTTTGGCTACAGGTAAAACA
ACTTTATCATGATTTGTAAGGCATAATTAGTAATTATATGTGGTGTTGGT
AACAGTTTGTTCGGAAACTTTAGTAGAATATTGTTGTCTGCAATTTGGTC
GTGTAATAAGTAATTCGAATACTCCTCTTAGGAGCTTGTGTACATGATAA
TACTTACTATTTAGAGGGCAAGCCTCGGGGGTTGCTTTGTTAGTCRTCCC
AATGTAGTGCAATCCYAATCCGAACAACCAATTTGGAATTATATCTAGTA
GTAGAAGAAAGAAAATCAGGTTAAAGTGCAAGACTTTAAGTATATATTCT
GTAATTTCACAATTTTTTCGTAGTCCAAGTAAACAGTAATAAATGCTAGA
TATTGTACCGTGTAAGAACAATTTGTACATACAATTCAAGAAAGTAAYTA
GATATGCTAAAAAATCTTGTAGTTGTCTAAAGGTTAAAAGAAAAGAAATG
GTGGTAAGTATAGAATCRGGTTTACTGTTTCTGCTGCTTGGTACCTTCGT
TTTGCTGCTTGATTTACTTAGGCTTACATCTAAASCTGTATACTCTTGTA
TRWTGTTTTTTTTCTTTTTTTGTATTTGTATATGTGGTTTGAAAGTGAAT
TTTTGCAGGACTTGCATTTCCTCCTCTGTATTTCTATAAYGGAGGAGTCA
AAGAGTTCCTTGCTACAATAAAGCAGCATTTTTTTCTTGTGAGGTTGGTT
ATTATTGTTAATTAATGTTATAATACCTTTTGAAACTTAAGGTCCAAAGA
TGAAAGAATCCTTTCGCTACATCTTCTAAATCCTTATTTTCCAATTAAAA
AGTAGGTGGTCCAGAATTTTCATTCTGTTGAATGTTTTCAGGTCAGCTGA
AGATGCAAATGTATTTCTGGTGAATGATTTTCAAAATCCTCTCCAGGTAT
GCATCATTTGAGCTAAAGCCGRAATGAAACCTCCTCTTTTTTTTWTTTGT
TTTKTCAACTTTGGTTTTCTTGATGATACTATCAAGCTGGAAACTGCAAT
ATTTTTCATGACTTATTTGTTTCTTCAGAGAACTCTATCGTCTTTGGAGT
TGCCTAGGGTGCTTTCTGTTGCAAGTGGGCAATCTACATCAGTCTCAGTT
GGCGAGACCTTTTCAGATCAAAACCAGGAGAGAACAAGTGGGGATGTCAA
TCAAGAAGGAMATATAAGCATTTCTCAATACAGTGAGAGGCAAAGGCAAG
GGGTTCATGATCCTGCACGAGATCTCTCAATTCAAGTGTTGGAAAAGTTC
TCTCTYGTGACCAAATTTGCTCGAGAAACAACTTCTCAACTTTTCCGTGA
TAATCATAGTAACGGATATGGTGCTATAGAAAGGAGAAGTAATAACCAGC
CTCCCATTGATTACCCTCAGAAGGCATCCCATCATTCAAATAGAGTCCCT
GRGAAAAGTCCTGTCCCCCCAGATTCCCTGGAGGTAAACCTTCCATTTTA
TCAAGTTACTTAATGCATTTTGGGAAAAMCTGTTTCCATCAATGCTGTCA
ATTTATAAATGAACTCAAGGAAGTTTTCTGGCTTGGTKCCAAATTGCCAA
TAGAATTCGTGGATAAAAGGTTTTAAGATGTAATTTAAGCTTAGTCAAAC
ATACAATTTCCTTCGAATTATCGGGTCCATTGTATTATGAATATTTGTTC
AAATTGGCAGTTTGATAAAGTATCAATGGAATGGGGAAATCCACGACAGC
CACCTTTGGGCTCTGATGAGGTGATGATTTTTCACTTTTATAAAAAAGAA
CATTTTGRGTAGAGCTGGAGCTGCTAGAAATGTGTTGCTGTTGTCATATG
GGTTTGTGTAAGTTCCATTTWTTTTTGCAGTGGGAAACCTTCATGGATTC
TGAAGGAAGGATCGTCAACTCAGAAGCTTTCAGAAAGAGAATATTTTATG
GGGGAGTTGAGCACAAACTACGGAAAGAGGTTTCTATACTGTTGTATGTT
GGAAACTATGACTAAGTACTTTGTTTGAATATGCATTATCTCATCAGTAT
TCTTAATTATGATTGTAGGTCTGGCCATTCTTGTTAGGATACCATGCATA
TGATTCAACAGATGCTGAGAGGGAATACCTTAGGGCCRTTMAAAAGTCAG
AATTTGAAACTGTAAAGAAGCAATGGCAGGTTGGTAGTAGTAGTATTGTA
TATTTCCACTAAGAGTCTAAGACACAMACACACATTCTCTCTCTCTCTCT
CTCYYCCCCTCCCTAACATGCACAAAAATGCAACTGTCCTGAGGAGCTTG
ATTAGGTGGCTTATGATATGTATTTGTATTTTCCTCTGCAGAGTATCTCT
CYGGAACAGGCCAAAAGGTTTACAAAATTCAGGGAGAGAAAAGGCCTCAT
TGAGAAAGATGTGGTATCATGAAACTTGCGGGATTTATTTTGAGCTTTCA
ACTTCAGTGATGAATTATTGCTGTTTTTAAGTCTGAAACTGTTGTAATTT
TCTTTAGGTAAGGACTGACAGATCTCTCTCCTACTATGACGGGGACGATA
ATCCAAATGTGAATCTGTTACGCGATATACTCTTAACGTACTCATTTTAC
AACTTTGATCTTGGTTACTGTCAGGTGATTACTTCTTCTGCTTAGTAGAT
TCTTGCTGYAGTTGGCTGCATAAATTTACTTTACGTTTAAGCAAAACACA
TAAAGCTCAAGTAAAATACAATTTTACCATGCTAACATAAAAGTTTGGTT
TGGGATTATCTCACGATATGTAACCATATTAGCTCTGTGGTTTATACACA
TTTGTCATATATGTAGTTATGATATTCATTTGGGATATAGCTTTCTTCCT
GTCTGTTGTGGTCTTGTTTGTAAAGTGAGAACAGTATGTTTAAATAATRA
CCTCAAYTCTGAATGTAAGTTGCCTCAATATGTAACTTCGTAGCCCCAGT
TCAGTTGTGATAGCTGTGTACCATCATTGTATGATGTATCTTTCTTTTGT
CCTACAGGGTATGAGTGATCTCCTGTCCCCAATTTTGTATGTAATGGAGG
ATGAGTCTGAATCGTTTTGGTGTTTTGTTTCACTGATGGAGCGCCTTGGG
CCAAATTTCAACCGTGACCAAAGTGGCATGCACTCTCAACTTTTTGCAAT
AATGAAGGTCTCTCCCTTATCTACCTTTACATTGCTTTGCCAGGACGAAA
TAGTAGTTGTGTGTTCTTAATTCATTCTAAATCATTGTTGTTGTAGTTGG
TGGAGCTGTTAGACGCTCCGTTGCACAATCACTTTACTCAGAAGGACTGC
TTGAATTACTTTTTTTGTTTCCGCTGGGTTCTAATACAATTTAAAAGGTC
AGGTTCCACACTCCGTTCTTAATATYGATTCATTTATGTATGCGTGGTTG
TATGTTTGTGAGAGTTACTATATAGTTGATTATTAGTGTTACTGTAAATT
TCTTTCACTCCACTTTTCCTGATAAGAGTTTCATCGCATATCTATTTCTA
GGGAATTTGAATTCGACAAAACAATGCGCTTGTGGGAGTTATTATGGACA
CATTATCCGGCCGAGCATCTGCACCTGTATGTCTSTGTGGCGATATTGAA
GCGACACCGTAGTAAGATAATTGGGGAGCAAATGGACTTCGACACTCTAC
TGAAGTTCATTAATGAACTGAGCRGTCATATAGATCTTGATGCAGTGGTC
AGGGACGCGGAGGCTCTGTGCATATKTGCCGGCGAGAATGGTGCTGCTTC
CATTCCGCCYGGAACTCCACCGTCATTGCCCGTTGATGATGTTTTATTGT
ACCCTCAACAAGAACTAGACGACATATTGTAA

protein sequence of MDP0000167315

>MDP0000167315 ID=MDP0000167315; Name=MDP0000167315; organism=Malus x domestica; type=polypeptide; length=724bp
MSERNXYDLTNEPKLSEHEERPSLRAIPLTWTPLTIRVLHGDPTALPTKN
SLSPPLSFYLQSSAMQEPELHDLSDDADYAASLQHGSASMMRSDSGKHSS
SSEHDGAEVVFLKDNVTIHPTQFASERISGRLRLIKHGSSLFMTWIPYNG
QNSNARVSEKDRNLYTIRPVPLTEVRSIRRHTPALGWQYIIIVLATGLAF
PPLYFYNGGVKEFLATIKQHFFLVRSAEDANVFLVNDFQNPLQRTLSSLE
LPRVLSVASGQSTSVSVGETFSDQNQERTSGDVNQEGXISISQYSERQRQ
GVHDPARDLSIQVLEKFSLVTKFARETTSQLFRDNHSNGYGAIERRSNNQ
PPIDYPQKASHHSNRVPXKSPVPPDSLEFDKVSMEWGNPRQPPLGSDEWE
TFMDSEGRIVNSEAFRKRIFYGGVEHKLRKEVWPFLLGYHAYDSTDAERE
YLRAXXKSEFETVKKQWQSISXEQAKRFTKFRERKGLIEKDVVRTDRSLS
YYDGDDNPNVNLLRDILLTYSFYNFDLGYCQGMSDLLSPILYVMEDESES
FWCFVSLMERLGPNFNRDQSGMHSQLFAIMKLVELLDAPLHNHFTQKDCL
NYFFCFRWVLIQFKREFEFDKTMRLWELLWTHYPAEHLHLYVXVAILKRH
RSKIIGEQMDFDTLLKFINELSXHIDLDAVVRDAEALCIXAGENGAASIP
PGTPPSLPVDDVLLYPQQELDDIL

mRNA from alignment at chr8:3348578..3353309-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000167315 ID=MDP0000167315; Name=MDP0000167315; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr8:3348578..3353309- (Malus x domestica

mRNA from alignment at MDC003763.376:7679..12410-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000167315 ID=MDP0000167315; Name=MDP0000167315; organism=Malus x domestica; type=mRNA; length=4732bp; location=Sequence derived from: MDC003763.376:7679..12410- (Malus x domestica
ATGTCAGAGCGCAACYGATATGATCTAACCAACGGTCGGATAGATCTCCA
CTAACCAACGGATATGATCTAAAACAATACTTACAACAAATTCACCTGAT
CAGAGCCCAAGCTATCCGAACACGAGGAAAGACCCTCATTACGCGCCATA
CCGCTTACGTGGACGCCCCTCACCATAAGAGTTCTCCACGGCGACCCCAC
TGCCTTGCCCACTAAGAATTCTCTCTCTCCTCCGCTTTCTTTCTATCTGC
AATCGTCGGCGATGCAAGAACCAGAGCTCCACGATCTCTCCGACGACGCC
GATTACGCCGCGTCGCTGCAACACGTAAGCGTTTCTCCGGCAACGCCAAC
TTTAATTCATCGTTTCTGAGTGTTTAGGGTTAATTATTTTGGGGATTTTG
GTCGGTTTGATTTGGATCAGGGCTCGGCGAGCATGATGCGGAGCGACAGC
GGGAAGCACAGCTCGTCGAGCGAGCACGACGGCGCCGAGGTGGTTTTCTT
AAAAGACAATGTCACCATCCACCCTACTCAGTTCGCCTCCGAGAGGATTA
GTGGAAGATTGAGGCTAATTAAGCACGGTTCTTCCTTATTCATGGTATTA
TTCATTAATTAATGATTGATTAATTAAAGATTATCGCTTGATTACTGATA
TTTCTGTTAATTATTGACGTGTTTGGTACGGTTTAATTTGTAGACATGGA
TTCCGTACAACGGGCAAAACTCGAACGCTAGGGTGTCTGAGAAAGGTTTT
GTAGATTTAGACCTTGAATTTTAGTTGTTAAATTTGTTGAATTTATTTAT
TTAWTTWWTTTTWTTTKTTTTTGTGGTGGTGTAGATAGGAATCTTTATAC
CATAAGGCCAGTGCCATTAACGGAGGTCCGGTCGATTCGCCGCCACACTC
CGGCGCTTGGATGGCAGTACATTATCATCGTTTTGGCTACAGGTAAAACA
ACTTTATCATGATTTGTAAGGCATAATTAGTAATTATATGTGGTGTTGGT
AACAGTTTGTTCGGAAACTTTAGTAGAATATTGTTGTCTGCAATTTGGTC
GTGTAATAAGTAATTCGAATACTCCTCTTAGGAGCTTGTGTACATGATAA
TACTTACTATTTAGAGGGCAAGCCTCGGGGGTTGCTTTGTTAGTCRTCCC
AATGTAGTGCAATCCYAATCCGAACAACCAATTTGGAATTATATCTAGTA
GTAGAAGAAAGAAAATCAGGTTAAAGTGCAAGACTTTAAGTATATATTCT
GTAATTTCACAATTTTTTCGTAGTCCAAGTAAACAGTAATAAATGCTAGA
TATTGTACCGTGTAAGAACAATTTGTACATACAATTCAAGAAAGTAAYTA
GATATGCTAAAAAATCTTGTAGTTGTCTAAAGGTTAAAAGAAAAGAAATG
GTGGTAAGTATAGAATCRGGTTTACTGTTTCTGCTGCTTGGTACCTTCGT
TTTGCTGCTTGATTTACTTAGGCTTACATCTAAASCTGTATACTCTTGTA
TRWTGTTTTTTTTCTTTTTTTGTATTTGTATATGTGGTTTGAAAGTGAAT
TTTTGCAGGACTTGCATTTCCTCCTCTGTATTTCTATAAYGGAGGAGTCA
AAGAGTTCCTTGCTACAATAAAGCAGCATTTTTTTCTTGTGAGGTTGGTT
ATTATTGTTAATTAATGTTATAATACCTTTTGAAACTTAAGGTCCAAAGA
TGAAAGAATCCTTTCGCTACATCTTCTAAATCCTTATTTTCCAATTAAAA
AGTAGGTGGTCCAGAATTTTCATTCTGTTGAATGTTTTCAGGTCAGCTGA
AGATGCAAATGTATTTCTGGTGAATGATTTTCAAAATCCTCTCCAGGTAT
GCATCATTTGAGCTAAAGCCGRAATGAAACCTCCTCTTTTTTTTWTTTGT
TTTKTCAACTTTGGTTTTCTTGATGATACTATCAAGCTGGAAACTGCAAT
ATTTTTCATGACTTATTTGTTTCTTCAGAGAACTCTATCGTCTTTGGAGT
TGCCTAGGGTGCTTTCTGTTGCAAGTGGGCAATCTACATCAGTCTCAGTT
GGCGAGACCTTTTCAGATCAAAACCAGGAGAGAACAAGTGGGGATGTCAA
TCAAGAAGGAMATATAAGCATTTCTCAATACAGTGAGAGGCAAAGGCAAG
GGGTTCATGATCCTGCACGAGATCTCTCAATTCAAGTGTTGGAAAAGTTC
TCTCTYGTGACCAAATTTGCTCGAGAAACAACTTCTCAACTTTTCCGTGA
TAATCATAGTAACGGATATGGTGCTATAGAAAGGAGAAGTAATAACCAGC
CTCCCATTGATTACCCTCAGAAGGCATCCCATCATTCAAATAGAGTCCCT
GRGAAAAGTCCTGTCCCCCCAGATTCCCTGGAGGTAAACCTTCCATTTTA
TCAAGTTACTTAATGCATTTTGGGAAAAMCTGTTTCCATCAATGCTGTCA
ATTTATAAATGAACTCAAGGAAGTTTTCTGGCTTGGTKCCAAATTGCCAA
TAGAATTCGTGGATAAAAGGTTTTAAGATGTAATTTAAGCTTAGTCAAAC
ATACAATTTCCTTCGAATTATCGGGTCCATTGTATTATGAATATTTGTTC
AAATTGGCAGTTTGATAAAGTATCAATGGAATGGGGAAATCCACGACAGC
CACCTTTGGGCTCTGATGAGGTGATGATTTTTCACTTTTATAAAAAAGAA
CATTTTGRGTAGAGCTGGAGCTGCTAGAAATGTGTTGCTGTTGTCATATG
GGTTTGTGTAAGTTCCATTTWTTTTTGCAGTGGGAAACCTTCATGGATTC
TGAAGGAAGGATCGTCAACTCAGAAGCTTTCAGAAAGAGAATATTTTATG
GGGGAGTTGAGCACAAACTACGGAAAGAGGTTTCTATACTGTTGTATGTT
GGAAACTATGACTAAGTACTTTGTTTGAATATGCATTATCTCATCAGTAT
TCTTAATTATGATTGTAGGTCTGGCCATTCTTGTTAGGATACCATGCATA
TGATTCAACAGATGCTGAGAGGGAATACCTTAGGGCCRTTMAAAAGTCAG
AATTTGAAACTGTAAAGAAGCAATGGCAGGTTGGTAGTAGTAGTATTGTA
TATTTCCACTAAGAGTCTAAGACACAMACACACATTCTCTCTCTCTCTCT
CTCYYCCCCTCCCTAACATGCACAAAAATGCAACTGTCCTGAGGAGCTTG
ATTAGGTGGCTTATGATATGTATTTGTATTTTCCTCTGCAGAGTATCTCT
CYGGAACAGGCCAAAAGGTTTACAAAATTCAGGGAGAGAAAAGGCCTCAT
TGAGAAAGATGTGGTATCATGAAACTTGCGGGATTTATTTTGAGCTTTCA
ACTTCAGTGATGAATTATTGCTGTTTTTAAGTCTGAAACTGTTGTAATTT
TCTTTAGGTAAGGACTGACAGATCTCTCTCCTACTATGACGGGGACGATA
ATCCAAATGTGAATCTGTTACGCGATATACTCTTAACGTACTCATTTTAC
AACTTTGATCTTGGTTACTGTCAGGTGATTACTTCTTCTGCTTAGTAGAT
TCTTGCTGYAGTTGGCTGCATAAATTTACTTTACGTTTAAGCAAAACACA
TAAAGCTCAAGTAAAATACAATTTTACCATGCTAACATAAAAGTTTGGTT
TGGGATTATCTCACGATATGTAACCATATTAGCTCTGTGGTTTATACACA
TTTGTCATATATGTAGTTATGATATTCATTTGGGATATAGCTTTCTTCCT
GTCTGTTGTGGTCTTGTTTGTAAAGTGAGAACAGTATGTTTAAATAATRA
CCTCAAYTCTGAATGTAAGTTGCCTCAATATGTAACTTCGTAGCCCCAGT
TCAGTTGTGATAGCTGTGTACCATCATTGTATGATGTATCTTTCTTTTGT
CCTACAGGGTATGAGTGATCTCCTGTCCCCAATTTTGTATGTAATGGAGG
ATGAGTCTGAATCGTTTTGGTGTTTTGTTTCACTGATGGAGCGCCTTGGG
CCAAATTTCAACCGTGACCAAAGTGGCATGCACTCTCAACTTTTTGCAAT
AATGAAGGTCTCTCCCTTATCTACCTTTACATTGCTTTGCCAGGACGAAA
TAGTAGTTGTGTGTTCTTAATTCATTCTAAATCATTGTTGTTGTAGTTGG
TGGAGCTGTTAGACGCTCCGTTGCACAATCACTTTACTCAGAAGGACTGC
TTGAATTACTTTTTTTGTTTCCGCTGGGTTCTAATACAATTTAAAAGGTC
AGGTTCCACACTCCGTTCTTAATATYGATTCATTTATGTATGCGTGGTTG
TATGTTTGTGAGAGTTACTATATAGTTGATTATTAGTGTTACTGTAAATT
TCTTTCACTCCACTTTTCCTGATAAGAGTTTCATCGCATATCTATTTCTA
GGGAATTTGAATTCGACAAAACAATGCGCTTGTGGGAGTTATTATGGACA
CATTATCCGGCCGAGCATCTGCACCTGTATGTCTSTGTGGCGATATTGAA
GCGACACCGTAGTAAGATAATTGGGGAGCAAATGGACTTCGACACTCTAC
TGAAGTTCATTAATGAACTGAGCRGTCATATAGATCTTGATGCAGTGGTC
AGGGACGCGGAGGCTCTGTGCATATKTGCCGGCGAGAATGGTGCTGCTTC
CATTCCGCCYGGAACTCCACCGTCATTGCCCGTTGATGATGTTTTATTGT
ACCCTCAACAAGAACTAGACGACATATTGTAA

Coding sequence (CDS) from alignment at MDC003763.376:7679..12410-

>MDP0000167315 ID=MDP0000167315; Name=MDP0000167315; organism=Malus x domestica; type=CDS; length=2175bp; location=Sequence derived from: MDC003763.376:7679..12410- (Malus x domestica
ATGTCAGAGCGCAACYGATATGATCTAACCAACGAGCCCAAGCTATCCGA
ACACGAGGAAAGACCCTCATTACGCGCCATACCGCTTACGTGGACGCCCC
TCACCATAAGAGTTCTCCACGGCGACCCCACTGCCTTGCCCACTAAGAAT
TCTCTCTCTCCTCCGCTTTCTTTCTATCTGCAATCGTCGGCGATGCAAGA
ACCAGAGCTCCACGATCTCTCCGACGACGCCGATTACGCCGCGTCGCTGC
AACACGGCTCGGCGAGCATGATGCGGAGCGACAGCGGGAAGCACAGCTCG
TCGAGCGAGCACGACGGCGCCGAGGTGGTTTTCTTAAAAGACAATGTCAC
CATCCACCCTACTCAGTTCGCCTCCGAGAGGATTAGTGGAAGATTGAGGC
TAATTAAGCACGGTTCTTCCTTATTCATGACATGGATTCCGTACAACGGG
CAAAACTCGAACGCTAGGGTGTCTGAGAAAGATAGGAATCTTTATACCAT
AAGGCCAGTGCCATTAACGGAGGTCCGGTCGATTCGCCGCCACACTCCGG
CGCTTGGATGGCAGTACATTATCATCGTTTTGGCTACAGGACTTGCATTT
CCTCCTCTGTATTTCTATAAYGGAGGAGTCAAAGAGTTCCTTGCTACAAT
AAAGCAGCATTTTTTTCTTGTGAGGTCAGCTGAAGATGCAAATGTATTTC
TGGTGAATGATTTTCAAAATCCTCTCCAGAGAACTCTATCGTCTTTGGAG
TTGCCTAGGGTGCTTTCTGTTGCAAGTGGGCAATCTACATCAGTCTCAGT
TGGCGAGACCTTTTCAGATCAAAACCAGGAGAGAACAAGTGGGGATGTCA
ATCAAGAAGGAMATATAAGCATTTCTCAATACAGTGAGAGGCAAAGGCAA
GGGGTTCATGATCCTGCACGAGATCTCTCAATTCAAGTGTTGGAAAAGTT
CTCTCTYGTGACCAAATTTGCTCGAGAAACAACTTCTCAACTTTTCCGTG
ATAATCATAGTAACGGATATGGTGCTATAGAAAGGAGAAGTAATAACCAG
CCTCCCATTGATTACCCTCAGAAGGCATCCCATCATTCAAATAGAGTCCC
TGRGAAAAGTCCTGTCCCCCCAGATTCCCTGGAGTTTGATAAAGTATCAA
TGGAATGGGGAAATCCACGACAGCCACCTTTGGGCTCTGATGAGTGGGAA
ACCTTCATGGATTCTGAAGGAAGGATCGTCAACTCAGAAGCTTTCAGAAA
GAGAATATTTTATGGGGGAGTTGAGCACAAACTACGGAAAGAGGTCTGGC
CATTCTTGTTAGGATACCATGCATATGATTCAACAGATGCTGAGAGGGAA
TACCTTAGGGCCRTTMAAAAGTCAGAATTTGAAACTGTAAAGAAGCAATG
GCAGAGTATCTCTCYGGAACAGGCCAAAAGGTTTACAAAATTCAGGGAGA
GAAAAGGCCTCATTGAGAAAGATGTGGTAAGGACTGACAGATCTCTCTCC
TACTATGACGGGGACGATAATCCAAATGTGAATCTGTTACGCGATATACT
CTTAACGTACTCATTTTACAACTTTGATCTTGGTTACTGTCAGGGTATGA
GTGATCTCCTGTCCCCAATTTTGTATGTAATGGAGGATGAGTCTGAATCG
TTTTGGTGTTTTGTTTCACTGATGGAGCGCCTTGGGCCAAATTTCAACCG
TGACCAAAGTGGCATGCACTCTCAACTTTTTGCAATAATGAAGTTGGTGG
AGCTGTTAGACGCTCCGTTGCACAATCACTTTACTCAGAAGGACTGCTTG
AATTACTTTTTTTGTTTCCGCTGGGTTCTAATACAATTTAAAAGGGAATT
TGAATTCGACAAAACAATGCGCTTGTGGGAGTTATTATGGACACATTATC
CGGCCGAGCATCTGCACCTGTATGTCTSTGTGGCGATATTGAAGCGACAC
CGTAGTAAGATAATTGGGGAGCAAATGGACTTCGACACTCTACTGAAGTT
CATTAATGAACTGAGCRGTCATATAGATCTTGATGCAGTGGTCAGGGACG
CGGAGGCTCTGTGCATATKTGCCGGCGAGAATGGTGCTGCTTCCATTCCG
CCYGGAACTCCACCGTCATTGCCCGTTGATGATGTTTTATTGTACCCTCA
ACAAGAACTAGACGACATATTGTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000195	Rab-GAP-TBC_dom
IPR021935	SGSM1/2_RBD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005097	Rab GTPase activator activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure

Vocabulary: **Biological Process**
Term	Definition
GO:0032313	regulation of Rab GTPase activity