MDP0000177096, MDP0000177096 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000177096
Unique Name	MDP0000177096
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	3774

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr11	chromosome	chr11:500030..503803 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC006313.383	contig	MDC006313.383:792..4565 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs NCBI nr	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs Vitis vinifera	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs UniProt Swiss-Prot	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs UniProt TrEMBL	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs TAIR 10	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs Populus trichocarpa v2.0	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs Prunus persica v1.0	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000177096_exon_1	MDP0000177096_exon_1	Malus x domestica	CDS
MDP0000177096_exon_2	MDP0000177096_exon_2	Malus x domestica	CDS
MDP0000177096_exon_3	MDP0000177096_exon_3	Malus x domestica	CDS
MDP0000177096_exon_4	MDP0000177096_exon_4	Malus x domestica	CDS
MDP0000177096_exon_5	MDP0000177096_exon_5	Malus x domestica	CDS
MDP0000177096_exon_6	MDP0000177096_exon_6	Malus x domestica	CDS
MDP0000177096_exon_7	MDP0000177096_exon_7	Malus x domestica	CDS
MDP0000177096_exon_8	MDP0000177096_exon_8	Malus x domestica	CDS
MDP0000177096_exon_9	MDP0000177096_exon_9	Malus x domestica	CDS
MDP0000177096_exon_10	MDP0000177096_exon_10	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000177096	MDP0000177096	Malus x domestica	polypeptide

Homology

[Close]

BLAST of MDP0000177096 vs. NCBI nr
Match: gi|224055129|ref|XP_002298421.1| (predicted protein [Populus trichocarpa] >gi|222845679|gb|EEE83226.1| predicted protein [Populus trichocarpa])

HSP 1 Score: 140.969 bits (354), Expect = 4.490e-31
Identity = 80/176 (45.45%), Postives = 101/176 (57.39%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDG--DYTSYGCIQESN-GMLKITELPIRKWTDKYLKFLNSVAEHNAD-----AKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + LD+ G+ ++P    P+IPMVLVN CEGIG GW T +PNY P           +      ++   M PWY+GF G IE   S +    YT  G I E N   L+ITELPIR+WTD Y  FLNSV E N D      KDPFIK ++KYGDD + +   V LS + +  AKQEGL
Sbjct:  805 LLDYLDEDGQTIEPNWYMPIIPMVLVNGCEGIGTGWSTFIPNYNPRDIVANIRRLLNG-----EMMEPMNPWYRGFKGTIEKGASKEAGCSYTVNGVINEVNETTLRITELPIRRWTDDYKAFLNSVTEGNRDENGNLPKDPFIKDFRKYGDDATVV-FEVLLSEENMMIAKQEGL 974

[Close]

BLAST of MDP0000177096 vs. NCBI nr
Match: gi|224106109|ref|XP_002314046.1| (predicted protein [Populus trichocarpa] >gi|222850454|gb|EEE88001.1| predicted protein [Populus trichocarpa])

HSP 1 Score: 139.043 bits (349), Expect = 1.706e-30
Identity = 78/177 (44.07%), Postives = 102/177 (57.63%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSY---GCIQESN-GMLKITELPIRKWTDKYLKFLNSVAEHNAD-----AKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + LD+ G+ ++P    P+IP VLVN CEGIG GW T +PNY P           +      ++   M PWY+GF G IE   S +G  +SY   G I E N   L+ITELPIR+WTD Y  FLNSV E   D      KDPF+K ++KYGDD + +   V+LS + +  AKQEGL
Sbjct:  808 LLDYLDEDGQTIEPTWYMPIIPTVLVNGCEGIGTGWSTFIPNYNPRDVVANIRRLLNG-----EMMEPMNPWYRGFKGTIEKGASKEGGCSSYTVNGVINEVNETTLRITELPIRRWTDDYKAFLNSVTEGTRDENGNLPKDPFVKDFRKYGDDAA-VHFEVQLSEENMLVAKQEGL 978

[Close]

BLAST of MDP0000177096 vs. NCBI nr
Match: gi|255553522|ref|XP_002517802.1| (DNA topoisomerase II, putative [Ricinus communis] >gi|223543074|gb|EEF44609.1| DNA topoisomerase II, putative [Ricinus communis])

HSP 1 Score: 135.191 bits (339), Expect = 2.464e-29
Identity = 78/176 (44.32%), Postives = 104/176 (59.09%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSD--GDYTSYGCIQESN-GMLKITELPIRKWTDKYLKFLNSVAEHNAD-----AKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + L + G  ++P   +P+IP+VLVN CEGIG GW T +PNY P               N +K+   M PWYKGF G IE S S +  G Y   G I+E N   ++ITELPIR+WTD+Y  FLNSV E+  D      KD FIK ++KYGDD S +   V LS +++++ K EGL
Sbjct:  523 LLDYLQEDGLSIEPTWYAPIIPLVLVNGCEGIGTGWSTFIPNYNPRDIVANLRRFL----NGEKME-PMHPWYKGFKGTIEKSASKEGGGSYAVNGIIEEVNETTVRITELPIRRWTDEYKDFLNSVIENVRDEKGNLPKDAFIKDFRKYGDDVS-VCFEVLLSEEKMKQVKDEGL 692

[Close]

BLAST of MDP0000177096 vs. NCBI nr
Match: gi|86438844|emb|CAJ44361.1| (putative DNA topoisomerase II [Malus x domestica])

HSP 1 Score: 129.798 bits (325), Expect = 1.035e-27
Identity = 73/170 (42.94%), Postives = 100/170 (58.82%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDG-DYTSYGCIQE-SNGMLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + L++ G+ ++P    P+IP VLVN  EGIG GW + +PNY P           D    V      M PWY+GF G IE +    G  YT+ G I+E S   L+I+ELPIR+WT  Y +FL S++E N  AKDPFI+G+ ++ D  S +DI V L  ++L  AKQEGL
Sbjct:  775 LLDYLNEDGQSIEPTWYVPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLDGDAMVP-----MDPWYRGFTGTIEKTVKESGVSYTACGIIEEVSETSLRISELPIRRWTQDYKEFLESISEGNDKAKDPFIEGFTQHSDH-STVDIIVHLREEKLMAAKQEGL 938

[Close]

BLAST of MDP0000177096 vs. NCBI nr
Match: gi|297736284|emb|CBI24922.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 124.405 bits (311), Expect = 4.349e-26
Identity = 70/173 (40.46%), Postives = 99/173 (57.23%), Query Frame = 1

Query:  661 VVFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGD---YTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            ++ + L++ G+ ++P    P IPMVLVN  EGIG GW + +PNY P           + +     +   M PWY+GF G IE +  +  +   YT  G I+E N   L+I+ELP+RKWT  Y +FL S+   N   KDPFIK YK++ DDT+ +   V +S + L  AKQEGL
Sbjct:  807 ILLDYLNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDIIANVRRLLNGE-----MMEPMDPWYRGFRGTIEKTDPTKQESVGYTVKGIIEEVNETTLRISELPVRKWTQDYKEFLESIMTGNDKIKDPFIKDYKEHNDDTT-VHFEVIMSEENLLMAKQEGL 973

[Close]

BLAST of MDP0000177096 vs. NCBI nr
Match: gi|225450069|ref|XP_002274267.1| (PREDICTED: DNA topoisomerase 2-like [Vitis vinifera])

HSP 1 Score: 124.405 bits (311), Expect = 4.349e-26
Identity = 70/173 (40.46%), Postives = 99/173 (57.23%), Query Frame = 1

Query:  661 VVFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGD---YTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            ++ + L++ G+ ++P    P IPMVLVN  EGIG GW + +PNY P           + +     +   M PWY+GF G IE +  +  +   YT  G I+E N   L+I+ELP+RKWT  Y +FL S+   N   KDPFIK YK++ DDT+ +   V +S + L  AKQEGL
Sbjct:  807 ILLDYLNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDIIANVRRLLNGE-----MMEPMDPWYRGFRGTIEKTDPTKQESVGYTVKGIIEEVNETTLRISELPVRKWTQDYKEFLESIMTGNDKIKDPFIKDYKEHNDDTT-VHFEVIMSEENLLMAKQEGL 973

[Close]

BLAST of MDP0000177096 vs. NCBI nr
Match: gi|26984133|gb|AAN85207.1| (DNA topoisomerase II [Nicotiana tabacum] >gi|26984168|gb|AAN85208.1| DNA topoisomerase II [Nicotiana tabacum])

HSP 1 Score: 124.02 bits (310), Expect = 5.680e-26
Identity = 74/176 (42.05%), Postives = 104/176 (59.09%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKL----PVE-MRPWYKGFHGRIE--GSQSSDGDYTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + L++ G+ ++P    P++PMVL+N  EGIG GW + VPNY P           D   NV +L    P+E M PWYKGF G IE   ++ +   YT  G I+E N   L+I+ELP+R+WT+ Y +FL S+   N  AKDPFIK  + YGD+ S +   V +S + L  A+QEGL
Sbjct:  804 IHDYLNEDGQYIEPTWYVPIVPMVLINGSEGIGTGWSSYVPNYNPR----------DLVANVRRLLNDEPMEPMDPWYKGFKGTIEKTATKEAGATYTVTGIIEEVNETTLRISELPVRRWTEDYKQFLESMTVSNDKAKDPFIKEVRAYGDENS-VCFEVIMSEENLILAQQEGL 968

[Close]

BLAST of MDP0000177096 vs. NCBI nr
Match: gi|357457981|ref|XP_003599271.1| (DNA topoisomerase [Medicago truncatula] >gi|355488319|gb|AES69522.1| DNA topoisomerase [Medicago truncatula])

HSP 1 Score: 122.865 bits (307), Expect = 1.265e-25
Identity = 67/169 (39.64%), Postives = 97/169 (57.40%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + E L++ G+ ++P    P+IP+VLVN  EGIG GW + +PNY P           +     D+  V M PWYKGF G IE S + +G Y   G ++E + +  +ITELPIRKWT  Y  FL    E   + KDP I+ +K+ GDD + +DI V++  +++    QEGL
Sbjct:  864 LLEYLNEDGRSIEPNWYIPIIPLVLVNGSEGIGTGWSSFIPNYNPREIIANVRRLLN-----DEEMVPMDPWYKGFRGTIEKS-AKEGGYIVNGSVEEIDDITFRITELPIRKWTQDYKTFLELTTEGAPNVKDPLIEDFKQNGDD-AIVDIEVRMKAEKVAAIMQEGL 1025

[Close]

BLAST of MDP0000177096 vs. NCBI nr
Match: gi|6094496|sp|O24308.1|TOP2_PEA (RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II; AltName: Full=PsTopII >gi|2330651|emb|CAA74891.1| topoisomerase II [Pisum sativum])

HSP 1 Score: 122.479 bits (306), Expect = 1.653e-25
Identity = 68/169 (40.24%), Postives = 99/169 (58.58%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + E L++ GK ++P    P+IP+VLVN  EGIG GW + +PNY P               N ++L V M PWYKGF G IE S + +G Y   G + E +    +ITELPIRKWT  Y +FL S+ +   + KDP I+ +++ GDD + +DI +K+  +++    QEGL
Sbjct:  781 LLEYLNEDGKSIEPNWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPREIIANVRRLL----NGEEL-VPMDPWYKGFRGTIEKS-AKEGGYIVNGTVTEIDEQTFRITELPIRKWTQDYKQFLESITDGAPNVKDPLIEDFRQNGDD-AIVDIEIKMKPEKIATILQEGL 942

[Close]

BLAST of MDP0000177096 vs. NCBI nr
Match: gi|356555329|ref|XP_003545986.1| (PREDICTED: DNA topoisomerase 2-like [Glycine max])

HSP 1 Score: 122.094 bits (305), Expect = 2.158e-25
Identity = 70/174 (40.23%), Postives = 100/174 (57.47%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKL-----PVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + E L++ G+ ++P    PVIP+VLVN  EGIG GW + +PNY P           D   NV +L      V M PWYKGF G IE S   +G Y   G ++E N    +ITELP+RKWT  Y +FL S+ + + + KDP I  +++ GDD + +DI V++  +++    QEGL
Sbjct:  810 LLEYLNEDGRCIEPNWYIPVIPLVLVNGSEGIGTGWSSYIPNYNPR----------DIIANVRRLLSGETMVPMDPWYKGFKGTIERSPK-EGGYVVNGSVEEINEQTFRITELPVRKWTQDYKQFLESITDGSPNVKDPLIDDFRQNGDDAT-VDIEVRMKLEKIVGIMQEGL 971

[Close]

BLAST of MDP0000177096 vs. Vitis vinifera
Match: GSVIVT01032138001 (assembled CDS)

HSP 1 Score: 124.405 bits (311), Expect = 9.646e-29
Identity = 70/173 (40.46%), Postives = 99/173 (57.23%), Query Frame = 1

Query:  661 VVFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGD---YTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            ++ + L++ G+ ++P    P IPMVLVN  EGIG GW + +PNY P           + +     +   M PWY+GF G IE +  +  +   YT  G I+E N   L+I+ELP+RKWT  Y +FL S+   N   KDPFIK YK++ DDT+ +   V +S + L  AKQEGL
Sbjct:  807 ILLDYLNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDIIANVRRLLNGE-----MMEPMDPWYRGFRGTIEKTDPTKQESVGYTVKGIIEEVNETTLRISELPVRKWTQDYKEFLESIMTGNDKIKDPFIKDYKEHNDDTT-VHFEVIMSEENLLMAKQEGL 973

[Close]

BLAST of MDP0000177096 vs. Vitis vinifera
Match: GSVIVT01025453001 (assembled CDS)

HSP 1 Score: 55.8398 bits (133), Expect = 4.213e-8
Identity = 33/66 (50.00%), Postives = 36/66 (54.55%), Query Frame = 1

Query: 1162 GLGNPGDKYEGTRQAQWKFVIS---------------------GFVGEVPVFLAKPQTYMNLRGES 1296
            GLGNPGDKY+GTR      +I+                     GFV  VPVFLAKPQTYMNL GES
Sbjct:   22 GLGNPGDKYKGTRHNVGFEMINAFAESQGIPMDTVHCKAIFGQGFVDAVPVFLAKPQTYMNLSGES 87

[Close]

BLAST of MDP0000177096 vs. Vitis vinifera
Match: GSVIVT01008257001 (assembled CDS)

HSP 1 Score: 52.373 bits (124), Expect = 4.658e-7
Identity = 31/67 (46.27%), Postives = 37/67 (55.22%), Query Frame = 1

Query: 1162 GLGNPGDKYEGTR------------QAQWKFVIS---------GFVGEVPVFLAKPQTYMNLRGESV 1299
            GLGNPG KY GTR            +A+   + S         GF+G VPV LAKPQT+MN+ GESV
Sbjct:  117 GLGNPGKKYNGTRHNVGFEMVDAIAEAEGISISSVSFKSLFGKGFIGNVPVMLAKPQTFMNVSGESV 183

[Close]

BLAST of MDP0000177096 vs. Vitis vinifera
Match: GSVIVT01031009001 (assembled CDS)

HSP 1 Score: 51.9878 bits (123), Expect = 6.084e-7
Identity = 31/67 (46.27%), Postives = 35/67 (52.24%), Query Frame = 1

Query: 1162 GLGNPGDKYEGTRQ--------------------AQWKFVIS-GFVGEVPVFLAKPQTYMNLRGESV 1299
            GLGNPG+KY GTR                      Q K +I  G +GEVP+ LAKPQ YMN  GESV
Sbjct:   56 GLGNPGNKYHGTRHNVGFEMIDRISQEEGILLNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESV 122

[Close]

BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
Match: TOP2_PEA (DNA topoisomerase 2 OS=Pisum sativum GN=TOP2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.969e-27
Identity = 68/169 (40.24%), Postives = 99/169 (58.58%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + E L++ GK ++P    P+IP+VLVN  EGIG GW + +PNY P               N ++L V M PWYKGF G IE S + +G Y   G + E +    +ITELPIRKWT  Y +FL S+ +   + KDP I+ +++ GDD + +DI +K+  +++    QEGL
Sbjct:  781 LLEYLNEDGKSIEPNWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPREIIANVRRLL----NGEEL-VPMDPWYKGFRGTIEKS-AKEGGYIVNGTVTEIDEQTFRITELPIRKWTQDYKQFLESITDGAPNVKDPLIEDFRQNGDD-AIVDIEIKMKPEKIATILQEGL 942

[Close]

BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
Match: TOP2_ARATH (DNA topoisomerase 2 OS=Arabidopsis thaliana GN=TOP2 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.229e-23
Identity = 64/171 (37.43%), Postives = 91/171 (53.22%), Query Frame = 1

Query:  661 VVFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDG--DYTSYGCIQE-SNGMLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEG 1164
            ++ + L++ G+ ++P    P+IP VLVN  EGIG GW T +PNY P           + +       V M PWY+GF G IE + S +G   YT  G  +E     ++ITELPIR+W D Y  FL S+   N     PF +  K Y D+ S +D  + LS + +  A+QEG
Sbjct:  813 LLLDYLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGES-----MVPMDPWYRGFKGTIEKTASKEGGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSLKTDNG---APFFQDVKAYNDEKS-VDFDLILSEENMLAARQEG 974

[Close]

BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
Match: TOP2_PLAFK (DNA topoisomerase 2 OS=Plasmodium falciparum (isolate K1 / Thailand) GN=TOP2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.143e-20
Identity = 71/205 (34.63%), Postives = 106/205 (51.71%), Query Frame = 1

Query:  589 SEKALQTDLERVKEEFTKVGLSSCVVFESLD--------QQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLP-VEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQE-SNGMLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDI--RVKLSGKQLREAKQEGL 1167
            S K    D    +  FTK+  S+  +F   D        ++G++++P    PVIP +LVN CEGIG G+ + +PNY             + K  ++K P + M PWYK F GRIE +  +   Y + G I +  N  L+ITELPI+KWT  Y +FL  +     D K   I  Y    D++S  DI   +K+   +L++A++EGL
Sbjct:  817 SRKEGGKDASAARYIFTKLASSTRSIFNEYDDPILKYLNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNY------NYKDIIDNIKRYINKEPLIPMVPWYKDFKGRIESNGKT--GYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELL---TDEKHQLILDYI---DNSSHEDICFTIKMDPAKLQKAEEEGL 1007

[Close]

BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
Match: TOP2_CAEEL (Probable DNA topoisomerase 2 OS=Caenorhabditis elegans GN=K12D12.1 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.128e-17
Identity = 58/166 (34.94%), Postives = 85/166 (51.20%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQE-SNGMLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQ 1158
            V   L ++ + ++P    P+IPMVLVN  +GIG GW T +PNY P              G   K    + PWYK F G+I   Q     +  YG +    +  ++ITELPI++WT  Y + +      ++D K P I  YK+Y  DT+ +   VKLS  +LRE ++
Sbjct:  860 VLRFLYEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLI--AGEPQK---ALAPWYKNFRGKI--IQIDPSRFACYGEVAVLDDNTIEITELPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTT-VKFVVKLSPGKLRELER 1017

[Close]

BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
Match: TOP2_DICDI (Probable DNA topoisomerase 2 OS=Dictyostelium discoideum GN=top2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.248e-16
Identity = 54/132 (40.91%), Postives = 72/132 (54.55%), Query Frame = 1

Query:  655 SCVVFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVE-MRPWYKGFHGRIEGSQSS---DGDYTSYGCIQE-SNGMLKITELPIRKWTDKYLKFLNSV 1035
            SCVV       GK+V+P    PVIPM+LVN C GIG GW + +PNY P           D K      P++ ++PWY+GF G IE +Q S    G Y S G  ++ S+   +ITELPI  WT  Y + L+ +
Sbjct:  883 SCVV-----DDGKKVQPKFYIPVIPMILVNGCVGIGTGWSSTIPNYNPRDLIQNMRLAIDGK------PLKPIKPWYRGFLGSIEANQGSKVQGGQYLSKGIWKKLSDNRFEITELPIGFWTQDYRELLDEL 1003

[Close]

BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
Match: TOP2_DROME (DNA topoisomerase 2 OS=Drosophila melanogaster GN=Top2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.073e-15
Identity = 51/140 (36.43%), Postives = 71/140 (50.71%), Query Frame = 1

Query:  688 GKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQESNG-MLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTS 1104
            G++++P    P+IPMVLVN  EGIG GW T + NY P           + +      P  M PWYK F GR+E    SDG Y   G IQ  +G  L+I+ELP+  WT  Y + +     +  +     I  Y++Y  DT+
Sbjct:  813 GQKIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKMINGQE-----PSVMHPWYKNFLGRME--YVSDGRYIQTGNIQILSGNRLEISELPVGVWTQNYKENVLEPLSNGTEKVKGIISEYREYHTDTT 945

[Close]

BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
Match: TOP2_BOMMO (DNA topoisomerase 2 OS=Bombyx mori GN=TOP2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.013e-15
Identity = 57/164 (34.76%), Postives = 77/164 (46.95%), Query Frame = 1

Query:  682 QQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQESNGMLKITELPIRKWTDKYLKFLNSVAEH--NADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            +  ++++P    P+IPMVLVN  EGIG GW T +PNY P           D      + P  M PWYK F G +EG    D    S          ++ITELP+  WT  Y +   +V E     D   P I  Y++Y  DT+   +   L GK L E + EG+
Sbjct:  839 EDNQKIEPVYYLPIIPMVLVNGVEGIGTGWSTKIPNYNPRDIAENLRRLLDG-----EKPKVMHPWYKNFKGNVEG--FGDKYVISGEAAILPGDKIEITELPVGTWTHNYKE---NVLEPMLGTDKVKPLISEYREYNTDTTVRFVVSLLPGK-LSEIEAEGI 991

[Close]

BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
Match: TOP2A_CHICK (DNA topoisomerase 2-alpha OS=Gallus gallus GN=TOP2A PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.940e-15
Identity = 55/169 (32.54%), Postives = 80/169 (47.34%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQ-ESNGMLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            V   L    + V+P    P+IPMVL+N  EGIG GW   +PN+             D K      P+ M P YK F G I+  +     Y   G +    +  ++ITELP+R WT  Y + +     +  +   P I  YK+Y  DT+ +   VK+S ++L EA+  GL
Sbjct:  826 VLRFLYDDNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKE-----PLPMLPSYKNFKGTID--ELGPNQYVISGEVSILDSTTIEITELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEYHTDTT-VKFVVKMSEEKLAEAEAVGL 986

[Close]

BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
Match: TOP2_PENCH (DNA topoisomerase 2 OS=Penicillium chrysogenum GN=TOP2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.601e-14
Identity = 51/165 (30.91%), Postives = 84/165 (50.91%), Query Frame = 1

Query:  679 DQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVE-MRPWYKGFHGRIEGSQSSDGDYTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            +  G +++     PV+PM+L+N  +GIG GW +  PNY P           + K  +D  P++ M+PW++GF G +  +      +   G I+E+    ++ITELPIR WT  +   L  + +  A+    FIK YK Y   T  +   +++  K ++ A  EGL
Sbjct:  858 EDDGAKIEQEVYVPVVPMILINGADGIGTGWSSSTPNYNP------EDIVENLKRMMDGEPLKPMQPWFRGFTGEV--TAVGQDRFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIK--AEKTPSFIKDYKDYNTHTK-VHFVIQMDEKHMKTAIAEGL 1011

[Close]

BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
Match: TOP2A_RAT (DNA topoisomerase 2-alpha OS=Rattus norvegicus GN=Top2a PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.601e-14
Identity = 52/165 (31.52%), Postives = 81/165 (49.09%), Query Frame = 1

Query:  676 LDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQESNG-MLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            L    + V+P    P+IPMVL+N  EGIG GW   +PN+             D +      P+ M P YK + G IE  + +   Y   G +   N   ++ITELPIR WT  Y + +     +  +   P I  Y++Y  DT+ +   +K++ ++L EA++ GL
Sbjct:  827 LYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEE-----PLPMLPSYKNYKGTIE--ELASNQYVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTT-VKFVIKMTEEKLAEAERVGL 983

[Close]

BLAST of MDP0000177096 vs. ExPASy TrEMBL
Match: B9GFC4_POPTR (DNA topoisomerase 2 OS=Populus trichocarpa GN=POPTRDRAFT_706393 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.885e-31
Identity = 80/176 (45.45%), Postives = 101/176 (57.39%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDG--DYTSYGCIQESN-GMLKITELPIRKWTDKYLKFLNSVAEHNAD-----AKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + LD+ G+ ++P    P+IPMVLVN CEGIG GW T +PNY P           +      ++   M PWY+GF G IE   S +    YT  G I E N   L+ITELPIR+WTD Y  FLNSV E N D      KDPFIK ++KYGDD + +   V LS + +  AKQEGL
Sbjct:  805 LLDYLDEDGQTIEPNWYMPIIPMVLVNGCEGIGTGWSTFIPNYNPRDIVANIRRLLNG-----EMMEPMNPWYRGFKGTIEKGASKEAGCSYTVNGVINEVNETTLRITELPIRRWTDDYKAFLNSVTEGNRDENGNLPKDPFIKDFRKYGDDATVV-FEVLLSEENMMIAKQEGL 974

[Close]

BLAST of MDP0000177096 vs. ExPASy TrEMBL
Match: B9HNR6_POPTR (DNA topoisomerase 2 OS=Populus trichocarpa GN=POPTRDRAFT_557797 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.856e-30
Identity = 78/177 (44.07%), Postives = 102/177 (57.63%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSY---GCIQESN-GMLKITELPIRKWTDKYLKFLNSVAEHNAD-----AKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + LD+ G+ ++P    P+IP VLVN CEGIG GW T +PNY P           +      ++   M PWY+GF G IE   S +G  +SY   G I E N   L+ITELPIR+WTD Y  FLNSV E   D      KDPF+K ++KYGDD + +   V+LS + +  AKQEGL
Sbjct:  808 LLDYLDEDGQTIEPTWYMPIIPTVLVNGCEGIGTGWSTFIPNYNPRDVVANIRRLLNG-----EMMEPMNPWYRGFKGTIEKGASKEGGCSSYTVNGVINEVNETTLRITELPIRRWTDDYKAFLNSVTEGTRDENGNLPKDPFVKDFRKYGDDAA-VHFEVQLSEENMLVAKQEGL 978

[Close]

BLAST of MDP0000177096 vs. ExPASy TrEMBL
Match: B9RVN3_RICCO (DNA topoisomerase II, putative OS=Ricinus communis GN=RCOM_0966810 PE=4 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.681e-29
Identity = 78/176 (44.32%), Postives = 104/176 (59.09%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSD--GDYTSYGCIQESN-GMLKITELPIRKWTDKYLKFLNSVAEHNAD-----AKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + L + G  ++P   +P+IP+VLVN CEGIG GW T +PNY P               N +K+   M PWYKGF G IE S S +  G Y   G I+E N   ++ITELPIR+WTD+Y  FLNSV E+  D      KD FIK ++KYGDD S +   V LS +++++ K EGL
Sbjct:  523 LLDYLQEDGLSIEPTWYAPIIPLVLVNGCEGIGTGWSTFIPNYNPRDIVANLRRFL----NGEKME-PMHPWYKGFKGTIEKSASKEGGGSYAVNGIIEEVNETTVRITELPIRRWTDEYKDFLNSVIENVRDEKGNLPKDAFIKDFRKYGDDVS-VCFEVLLSEEKMKQVKDEGL 692

[Close]

BLAST of MDP0000177096 vs. ExPASy TrEMBL
Match: Q2L363_MALDO (DNA topoisomerase 2 OS=Malus domestica GN=Md49N23_TopII.010 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.126e-27
Identity = 73/170 (42.94%), Postives = 100/170 (58.82%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDG-DYTSYGCIQE-SNGMLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + L++ G+ ++P    P+IP VLVN  EGIG GW + +PNY P           D    V      M PWY+GF G IE +    G  YT+ G I+E S   L+I+ELPIR+WT  Y +FL S++E N  AKDPFI+G+ ++ D  S +DI V L  ++L  AKQEGL
Sbjct:  775 LLDYLNEDGQSIEPTWYVPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLDGDAMVP-----MDPWYRGFTGTIEKTVKESGVSYTACGIIEEVSETSLRISELPIRRWTQDYKEFLESISEGNDKAKDPFIEGFTQHSDH-STVDIIVHLREEKLMAAKQEGL 938

[Close]

BLAST of MDP0000177096 vs. ExPASy TrEMBL
Match: F6HBC4_VITVI (DNA topoisomerase 2 OS=Vitis vinifera GN=VIT_13s0064g00560 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.732e-26
Identity = 70/173 (40.46%), Postives = 99/173 (57.23%), Query Frame = 1

Query:  661 VVFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGD---YTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            ++ + L++ G+ ++P    P IPMVLVN  EGIG GW + +PNY P           + +     +   M PWY+GF G IE +  +  +   YT  G I+E N   L+I+ELP+RKWT  Y +FL S+   N   KDPFIK YK++ DDT+ +   V +S + L  AKQEGL
Sbjct:  807 ILLDYLNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDIIANVRRLLNGE-----MMEPMDPWYRGFRGTIEKTDPTKQESVGYTVKGIIEEVNETTLRISELPVRKWTQDYKEFLESIMTGNDKIKDPFIKDYKEHNDDTT-VHFEVIMSEENLLMAKQEGL 973

[Close]

BLAST of MDP0000177096 vs. ExPASy TrEMBL
Match: Q8GSC4_TOBAC (DNA topoisomerase 2 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.180e-26
Identity = 74/176 (42.05%), Postives = 104/176 (59.09%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKL----PVE-MRPWYKGFHGRIE--GSQSSDGDYTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + L++ G+ ++P    P++PMVL+N  EGIG GW + VPNY P           D   NV +L    P+E M PWYKGF G IE   ++ +   YT  G I+E N   L+I+ELP+R+WT+ Y +FL S+   N  AKDPFIK  + YGD+ S +   V +S + L  A+QEGL
Sbjct:  804 IHDYLNEDGQYIEPTWYVPIVPMVLINGSEGIGTGWSSYVPNYNPR----------DLVANVRRLLNDEPMEPMDPWYKGFKGTIEKTATKEAGATYTVTGIIEEVNETTLRISELPVRRWTEDYKQFLESMTVSNDKAKDPFIKEVRAYGDENS-VCFEVIMSEENLILAQQEGL 968

[Close]

BLAST of MDP0000177096 vs. ExPASy TrEMBL
Match: G7IWV9_MEDTR (DNA topoisomerase 2 OS=Medicago truncatula GN=MTR_3g031040 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.377e-25
Identity = 67/169 (39.64%), Postives = 97/169 (57.40%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + E L++ G+ ++P    P+IP+VLVN  EGIG GW + +PNY P           +     D+  V M PWYKGF G IE S + +G Y   G ++E + +  +ITELPIRKWT  Y  FL    E   + KDP I+ +K+ GDD + +DI V++  +++    QEGL
Sbjct:  864 LLEYLNEDGRSIEPNWYIPIIPLVLVNGSEGIGTGWSSFIPNYNPREIIANVRRLLN-----DEEMVPMDPWYKGFRGTIEKS-AKEGGYIVNGSVEEIDDITFRITELPIRKWTQDYKTFLELTTEGAPNVKDPLIEDFKQNGDD-AIVDIEVRMKAEKVAAIMQEGL 1025

[Close]

BLAST of MDP0000177096 vs. ExPASy TrEMBL
Match: I1L9S4_SOYBN (Uncharacterized protein OS=Glycine max GN=Gma.48179 PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.596e-24
Identity = 70/174 (40.23%), Postives = 100/174 (57.47%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKL-----PVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + E L++ G+ ++P    PVIP+VLVN  EGIG GW + +PNY P           D   NV +L      V M PWYKGF G IE S   +G Y   G ++E N    +ITELPIRKWT  Y +FL S+ + + + KDP I  +++ GDD + ++I V++  +++    QEGL
Sbjct:  809 LLEYLNEDGRCIEPTWYIPVIPLVLVNGSEGIGTGWSSYIPNYNPR----------DIIANVRRLLSGETMVPMDPWYKGFKGTIERSPK-EGGYIVNGSVEEINEHNFRITELPIRKWTQDYKQFLESITDGSPNVKDPLIDDFRQNGDDAT-VNIEVRMKLEKIVGIMQEGL 970

[Close]

BLAST of MDP0000177096 vs. ExPASy TrEMBL
Match: Q4JF74_SCUBA (DNA topoisomerase 2 OS=Scutellaria baicalensis GN=TopII PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.866e-24
Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 1

Query:  661 VVFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIE--GSQSSDGDYTSYGCIQE-SNGMLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            ++ + L++ G+ ++P    P+IPMVLVN  EGIG GW + VPNY P           +     D+    M PWYKGF G +E   ++ +   YT  G I+E  +  L I ELPIR+WT  Y +FL SV+  N  +KDPFI+G + Y   +  ++  V +  ++L  AK+EGL
Sbjct:  816 ILLDYLNEDGQSIEPTWYVPIIPMVLVNGSEGIGTGWSSYVPNYNPVDIIANIRHLLN-----DEATEPMHPWYKGFLGSVEKTATKEAGASYTVSGIIEEVDDTTLCIKELPIRRWTQDYKEFLESVSAENDKSKDPFIEGCRDY-SGSELVNFLVGMKPEKLEAAKREGL 981

[Close]

BLAST of MDP0000177096 vs. ExPASy TrEMBL
Match: G7J2H1_MEDTR (DNA topoisomerase 2 OS=Medicago truncatula GN=MTR_3g085840 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.896e-23
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 1

Query:  676 LDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSYGCIQESNGMLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQ 1158
            L+++GK ++P    P+IP+VLVN  E IG GW + +PNY P           +     ++  V M PWY+GF G IE S    G   +   ++      +ITELPIRKWT+ Y +FL S+ E   +  DPFI+ +++ GDD + IDI VK+   ++    Q
Sbjct:  753 LNEEGKSIEPNWYIPIIPLVLVNGSEEIGTGWSSYIPNYNPREIIANVRRLLN-----EEEMVPMDPWYRGFRGTIEKSMKQGGYRVNGSMVKIDEQTFRITELPIRKWTEDYKQFLESITEGAPNVNDPFIEDFRQNGDD-AIIDIEVKMKPDKVASVMQ 907

[Close]

BLAST of MDP0000177096 vs. TAIR10
Match: AT3G23890.2 (| Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624931-8631106 FORWARD LENGTH=1438)

HSP 1 Score: 109.383 bits (272), Expect = 4.740e-24
Identity = 64/171 (37.43%), Postives = 91/171 (53.22%), Query Frame = 1

Query:  661 VVFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDG--DYTSYGCIQE-SNGMLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEG 1164
            ++ + L++ G+ ++P    P+IP VLVN  EGIG GW T +PNY P           + +       V M PWY+GF G IE + S +G   YT  G  +E     ++ITELPIR+W D Y  FL S+   N     PF +  K Y D+ S +D  + LS + +  A+QEG
Sbjct:  813 LLLDYLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGES-----MVPMDPWYRGFKGTIEKTASKEGGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSLKTDNG---APFFQDVKAYNDEKS-VDFDLILSEENMLAARQEG 974

[Close]

BLAST of MDP0000177096 vs. TAIR10
Match: AT3G23890.1 (| Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624931-8631106 FORWARD LENGTH=1473)

HSP 1 Score: 109.383 bits (272), Expect = 4.740e-24
Identity = 64/171 (37.43%), Postives = 91/171 (53.22%), Query Frame = 1

Query:  661 VVFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDG--DYTSYGCIQE-SNGMLKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEG 1164
            ++ + L++ G+ ++P    P+IP VLVN  EGIG GW T +PNY P           + +       V M PWY+GF G IE + S +G   YT  G  +E     ++ITELPIR+W D Y  FL S+   N     PF +  K Y D+ S +D  + LS + +  A+QEG
Sbjct:  813 LLLDYLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGES-----MVPMDPWYRGFKGTIEKTASKEGGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSLKTDNG---APFFQDVKAYNDEKS-VDFDLILSEENMLAARQEG 974

[Close]

BLAST of MDP0000177096 vs. TAIR10
Match: AT5G19830.1 (| Symbols: | Peptidyl-tRNA hydrolase family protein | chr5:6703383-6705125 FORWARD LENGTH=219)

HSP 1 Score: 55.0694 bits (131), Expect = 1.061e-7
Identity = 31/66 (46.97%), Postives = 37/66 (56.06%), Query Frame = 1

Query: 1162 GLGNPGDKYEGTRQ--------------------AQWKFVIS-GFVGEVPVFLAKPQTYMNLRGES 1296
            GLGNPGDKY+GTR                       +K ++  GFV ++PV LAKPQTYMNL GES
Sbjct:   23 GLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGES 88

[Close]

BLAST of MDP0000177096 vs. Populus trichicarpa v2.0
Match: POPTR_0001s27120.1 ()

HSP 1 Score: 140.969 bits (354), Expect = 1.674e-33
Identity = 80/176 (45.45%), Postives = 101/176 (57.39%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDG--DYTSYGCIQESN-GMLKITELPIRKWTDKYLKFLNSVAEHNAD-----AKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + LD+ G+ ++P    P+IPMVLVN CEGIG GW T +PNY P           +      ++   M PWY+GF G IE   S +    YT  G I E N   L+ITELPIR+WTD Y  FLNSV E N D      KDPFIK ++KYGDD + +   V LS + +  AKQEGL
Sbjct:  822 LLDYLDEDGQTIEPNWYMPIIPMVLVNGCEGIGTGWSTFIPNYNPRDIVANIRRLLNG-----EMMEPMNPWYRGFKGTIEKGASKEAGCSYTVNGVINEVNETTLRITELPIRRWTDDYKAFLNSVTEGNRDENGNLPKDPFIKDFRKYGDDATVV-FEVLLSEENMMIAKQEGL 991

[Close]

BLAST of MDP0000177096 vs. Populus trichicarpa v2.0
Match: POPTR_0009s06380.1 ()

HSP 1 Score: 138.658 bits (348), Expect = 8.307e-33
Identity = 78/173 (45.09%), Postives = 100/173 (57.80%), Query Frame = 1

Query:  676 LDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKLPVEMRPWYKGFHGRIEGSQSSDGDYTSY---GCIQESN-GMLKITELPIRKWTDKYLKFLNSVAEHNAD-----AKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            LD+ G+ ++P    P+IP VLVN CEGIG GW T +PNY P           +      ++   M PWY+GF G IE   S +G  +SY   G I E N   L+ITELPIR+WTD Y  FLNSV E   D      KDPF+K ++KYGDD + +   V+LS + +  AKQEGL
Sbjct:  812 LDEDGQTIEPTWYMPIIPTVLVNGCEGIGTGWSTFIPNYNPRDVVANIRRLLNG-----EMMEPMNPWYRGFKGTIEKGASKEGGCSSYTVNGVINEVNETTLRITELPIRRWTDDYKAFLNSVTEGTRDENGNLPKDPFVKDFRKYGDDAA-VHFEVQLSEENMLVAKQEGL 978

[Close]

BLAST of MDP0000177096 vs. Populus trichicarpa v2.0
Match: POPTR_0001s04230.2 ()

HSP 1 Score: 60.4622 bits (145), Expect = 2.875e-9
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 1

Query: 1162 GLGNPGDKYEGTRQAQW---------KFVISGFVGEVPVFLAKPQTYMNLRGES 1296
            GLGNPG+K++GTR   W              GFVG+ PV LAKPQTYMNL GES
Sbjct:   27 GLGNPGEKFKGTRHNAWISMNIPLCKALFGEGFVGDAPVLLAKPQTYMNLSGES 80

[Close]

BLAST of MDP0000177096 vs. GDR
Match: ppa000202m ()

HSP 1 Score: 123.25 bits (308), Expect = 2.533e-28
Identity = 72/175 (41.14%), Postives = 101/175 (57.71%), Query Frame = 1

Query:  664 VFESLDQQGKEVKPGRCSPVIPMVLVNVCEGIGVGWYTIVPNYPPXXXXXXXXXXXDSKGNVDKL-----PVEMRPWYKGFHGRIEGSQSSDG-DYTSYGCIQESNGM-LKITELPIRKWTDKYLKFLNSVAEHNADAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGL 1167
            + + L++ G+ ++P    P+IP VLVN  EGIG GW + +PNY             D   NV +L      V M PWY+GF G IE +    G  YT  G I+E N   ++I+ELPIR+WT  Y +FL S+++ N  AKDPFI+G+ ++ D  S +DI V L  + L  A+QEGL
Sbjct:  811 LLDYLNEDGQSIEPTWYVPIIPTVLVNGSEGIGTGWSSYIPNY----------NTRDIVANVRRLLNGEAMVPMDPWYRGFSGTIEKTVKESGVSYTVCGVIEEGNETTVRISELPIRRWTQDYKEFLESISQGNDKAKDPFIEGFTQHSDH-STVDIIVHLPEENLMAARQEGL 974

[Close]

BLAST of MDP0000177096 vs. GDR
Match: ppa011211m ()

HSP 1 Score: 62.003 bits (149), Expect = 6.929e-10
Identity = 35/67 (52.24%), Postives = 38/67 (56.72%), Query Frame = 1

Query: 1162 GLGNPGDKYEGTRQAQWKFVI----------------------SGFVGEVPVFLAKPQTYMNLRGES 1296
            GLGNPG+KY+GTR  Q  F +                       GFVGEVPVFLAKPQTYMNL GES
Sbjct:   22 GLGNPGNKYKGTRHNQVGFEMIDVFANSQGIEMSTVHCKAIFGQGFVGEVPVFLAKPQTYMNLSGES 88

The following BLAST results are available for this feature:

BLAST of MDP0000177096 vs. NCBI nr
BLAST of MDP0000177096 vs. Vitis vinifera
BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
BLAST of MDP0000177096 vs. ExPASy TrEMBL
BLAST of MDP0000177096 vs. TAIR10
BLAST of MDP0000177096 vs. Populus trichicarpa v2.0
BLAST of MDP0000177096 vs. GDR

BLAST of MDP0000177096 vs. NCBI nr
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs NCBI nr)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|224055129\|ref\|XP_002298421.1\|	4.490e-31	45.45	predicted protein [Populus trichocarpa] >gi\|222845...	[more]
gi\|224106109\|ref\|XP_002314046.1\|	1.706e-30	44.07	predicted protein [Populus trichocarpa] >gi\|222850...	[more]
gi\|255553522\|ref\|XP_002517802.1\|	2.464e-29	44.32	DNA topoisomerase II, putative [Ricinus communis] ...	[more]
gi\|86438844\|emb\|CAJ44361.1\|	1.035e-27	42.94	putative DNA topoisomerase II [Malus x domestica]	[more]
gi\|297736284\|emb\|CBI24922.3\|	4.349e-26	40.46	unnamed protein product [Vitis vinifera]	[more]
gi\|225450069\|ref\|XP_002274267.1\|	4.349e-26	40.46	PREDICTED: DNA topoisomerase 2-like [Vitis vinifer...	[more]
gi\|26984133\|gb\|AAN85207.1\|	5.680e-26	42.05	DNA topoisomerase II [Nicotiana tabacum] >gi\|26984...	[more]
gi\|357457981\|ref\|XP_003599271.1\|	1.265e-25	39.64	DNA topoisomerase [Medicago truncatula] >gi\|355488...	[more]
gi\|6094496\|sp\|O24308.1\|TOP2_PEA	1.653e-25	40.24	RecName: Full=DNA topoisomerase 2; AltName: Full=D...	[more]
gi\|356555329\|ref\|XP_003545986.1\|	2.158e-25	40.23	PREDICTED: DNA topoisomerase 2-like [Glycine max]	[more]

Pages

BLAST of MDP0000177096 vs. Vitis vinifera
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs Vitis vinifera)
Total hits: 4


Match Name	E-value	Identity	Description
GSVIVT01032138001	9.646e-29	40.46	assembled CDS	[more]
GSVIVT01025453001	4.213e-8	50.00	assembled CDS	[more]
GSVIVT01008257001	4.658e-7	46.27	assembled CDS	[more]
GSVIVT01031009001	6.084e-7	46.27	assembled CDS	[more]

BLAST of MDP0000177096 vs. ExPASy Swiss-Prot
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs UniProt Swiss-Prot)
Total hits: 25


Match Name	E-value	Identity	Description
TOP2_PEA	5.969e-27	40.24	DNA topoisomerase 2 OS=Pisum sativum GN=TOP2 PE=2 ...	[more]
TOP2_ARATH	5.229e-23	37.43	DNA topoisomerase 2 OS=Arabidopsis thaliana GN=TOP...	[more]
TOP2_PLAFK	4.143e-20	34.63	DNA topoisomerase 2 OS=Plasmodium falciparum (isol...	[more]
TOP2_CAEEL	1.128e-17	34.94	Probable DNA topoisomerase 2 OS=Caenorhabditis ele...	[more]
TOP2_DICDI	1.248e-16	40.91	Probable DNA topoisomerase 2 OS=Dictyostelium disc...	[more]
TOP2_DROME	3.073e-15	36.43	DNA topoisomerase 2 OS=Drosophila melanogaster GN=...	[more]
TOP2_BOMMO	4.013e-15	34.76	DNA topoisomerase 2 OS=Bombyx mori GN=TOP2 PE=2 SV...	[more]
TOP2A_CHICK	8.940e-15	32.54	DNA topoisomerase 2-alpha OS=Gallus gallus GN=TOP2...	[more]
TOP2_PENCH	2.601e-14	30.91	DNA topoisomerase 2 OS=Penicillium chrysogenum GN=...	[more]
TOP2A_RAT	2.601e-14	31.52	DNA topoisomerase 2-alpha OS=Rattus norvegicus GN=...	[more]

Pages

BLAST of MDP0000177096 vs. ExPASy TrEMBL
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs UniProt TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
B9GFC4_POPTR	4.885e-31	45.45	DNA topoisomerase 2 OS=Populus trichocarpa GN=POPT...	[more]
B9HNR6_POPTR	1.856e-30	44.07	DNA topoisomerase 2 OS=Populus trichocarpa GN=POPT...	[more]
B9RVN3_RICCO	2.681e-29	44.32	DNA topoisomerase II, putative OS=Ricinus communis...	[more]
Q2L363_MALDO	1.126e-27	42.94	DNA topoisomerase 2 OS=Malus domestica GN=Md49N23_...	[more]
F6HBC4_VITVI	4.732e-26	40.46	DNA topoisomerase 2 OS=Vitis vinifera GN=VIT_13s00...	[more]
Q8GSC4_TOBAC	6.180e-26	42.05	DNA topoisomerase 2 OS=Nicotiana tabacum PE=2 SV=1	[more]
G7IWV9_MEDTR	1.377e-25	39.64	DNA topoisomerase 2 OS=Medicago truncatula GN=MTR_...	[more]
I1L9S4_SOYBN	2.596e-24	40.23	Uncharacterized protein OS=Glycine max GN=Gma.4817...	[more]
Q4JF74_SCUBA	9.866e-24	38.37	DNA topoisomerase 2 OS=Scutellaria baicalensis GN=...	[more]
G7J2H1_MEDTR	4.896e-23	37.27	DNA topoisomerase 2 OS=Medicago truncatula GN=MTR_...	[more]

Pages

BLAST of MDP0000177096 vs. TAIR10
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs TAIR 10)
Total hits: 3


Match Name	E-value	Identity	Description
AT3G23890.2	4.740e-24	37.43	\| Symbols: TOPII, ATTOPII \| topoisomerase II \| chr...	[more]
AT3G23890.1	4.740e-24	37.43	\| Symbols: TOPII, ATTOPII \| topoisomerase II \| chr...	[more]
AT5G19830.1	1.061e-7	46.97	\| Symbols: \| Peptidyl-tRNA hydrolase family prote...	[more]

BLAST of MDP0000177096 vs. Populus trichicarpa v2.0
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs Populus trichocarpa v2.0)
Total hits: 3


Match Name	E-value	Identity
POPTR_0001s27120.1	1.674e-33	45.45	[more]
POPTR_0009s06380.1	8.307e-33	45.09	[more]
POPTR_0001s04230.2	2.875e-9	55.56	[more]

BLAST of MDP0000177096 vs. GDR
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs Prunus persica v1.0)
Total hits: 2


Match Name	E-value	Identity	Description
ppa000202m	2.533e-28	41.14		[more]
ppa011211m	6.929e-10	52.24		[more]

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001328	Peptidyl-tRNA hydrolase	SUPERFAMILY	53178	Peptidyl-tRNA hydrolase-like	coord: 381..433 score: 1.5
IPR002205	DNA topoisomerase, type IIA, subunit A/C-terminal	PFAM	PF00521	DNA_topoisoIV	coord: 228..381 score: 1
IPR013758	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	GENE3D	3.90.199.10	no description	coord: 205..282 score: 4.3
IPR013760	DNA topoisomerase, type IIA, central	SUPERFAMILY	56719	Type II DNA topoisomerase	coord: 230..389 score: 1.5
IPR024946	Arginine repressor C-terminal-like domain	GENE3D	3.30.1360.40	no description	coord: 297..389 score: 4.6
None	No IPR available	PANTHER	PTHR10169	DNA TOPOISOMERASE/GYRASE	coord: 240..389 score: 1.9
None	No IPR available	PANTHER	PTHR10169:SF19	DNA TOPOISOMERASE 2	coord: 240..389 score: 1.9
None	No IPR available	SEG	seg	seg	coord: 15..37 score: NAcoord: 115..127 score: NAcoord: 267..277 score
None	No IPR available	SEG	seg	seg	coord: 41..52 score
None	No IPR available	SEG	seg	seg	coord: 32..47 score
None	No IPR available	SEG	seg	seg	coord: 30..41 score
None	No IPR available	SEG	seg	seg	coord: 24..46 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:500030..503803-
mRNA from alignment at MDC006313.383:792..4565-
coding sequence from alignment at MDC006313.383:792..4565-

mRNA sequence

>MDP0000177096 ID=MDP0000177096; Name=MDP0000177096; organism=Malus x domestica; type=mRNA; length=3774bp
ATGCCTMAAGCGAGCGGCTTAGTGAGTATAATGAAGCTAGTATAATCATA
TAATATATTATATACTATTTAATGCACATATTAATGTATGCAACATTGCT
CAAATAAAAAGTTATTYGACTAAACGAATCAACACCACTCCACGTACCAA
AGGAGAGSTAAATTTTTATTTTGTCATTTTAAATATTTGGCGTCTTTTAT
GGTCAATTCAATAAAGGACATATGCATCCAACAAAAGAAAAATAAATGAT
AAGCACACAATCTACGTAATCTTTCACACATCTCTTAATCTTGACTTTTA
TTTTTTATAATTTATTCWATTTAGTTGTTAAAAATAAAAAGTAACGTGCA
AGAAGATAAAAATGGTTCGAAAATAATTTTACAAACAAATACAGGGCATA
GTGGAAAAGTAATTTTCTTTTAATTTAGTGGGTGGGGCATGTGACCTTTT
CTCACCAAAAAATAAAAAAATAAAAAAYTGTGGGCGGGAAGAGTAACAGT
CGGAGTATAAACAGAAACTCCGAAGAGAACGAGTGCGCTTGGGCCTTCAG
CAACCGTGACTTTAGCAGTCTCGACGACTGTCTCACGAAATTCACCACCG
CCGGTACGCCGCCGTGGTTGCTCGTCAGAGCACCAAAACGTCCAGAGCCA
AAGCCCGCACCTTCTCTCTGACGCTCTCACCGGTTATGCGAGGCAAGGTA
TTAATCTCAAACTTGACAAGTATATGCTTTGCATTCTGCAATACGCCTCT
TGTCTTTGGCTTTGTTTCCGTTGTGTCTCCAAAAATTTTAGTAATTTTAC
ACTCCGTTAAGTAGTTCACTCGCTGTTTACATTTCGAATGCAGTGTAACT
GTTTGTGAAAAGTTGCGAGTGGCAGGTGGGTTGGAGACTTTCGAGTTTCC
AGTTCATTTTTTTAGATGAATTATGGTGCTGAGGTGTAGTGGGAGGCACT
GAGTCTGAGGGGGAAGATGCTTAATCGGTTAAGTCGGCTGTTGCTTTTGC
ACTGCTGCTCCGAGGCCATGGCTATTTGTAGGTTTGGGCAATCCCGGCGA
TAAGTACCAAGGAACTAGGCACAATGTACTATTCCAGATTATACTTTTAG
TGGCTACAATTTGAGATTTTTAGTTTTTGTGTTTGTTGTTTCGATAACAA
GTTTCAGATTCTCGTTTTTTTGTTTGAAGCAGGCGGGGTTTTAGATGATT
GATGCGTTTGCTGGTTCGCAGGGCATTGCAATGAACACGGTCCAATGCAA
AGCTATACTTGGGCAAGGCATGTAAATCTTTGCGTATGTTACTTTGTTTA
TTGTCATTTTTCATGTTTGTTTGTGAAGTTCAGGGAAGTTTGTTATTTCA
GGTTTCGTGGGTGAAGTTCTGGTTTTTCTTGCAAAGCCTCAAACTTAAAT
GAATTTGAGAGATGAATCTGCAAGTGACTGATGTACTTAATTATGTTCTT
GTACTTCTATTTGGAAAGGTTATTCATTTATCTAGCCTTGCTATTTATGT
TTATTACTTCCACTGGGATTTCAATGAATATACTGAGATGGTATTTGTTC
TGTGCATTTCATTCTTTCTAGCACACTTCCAAAGCCATTTGCAATTCATT
AACTGCTTCACTTTTGTATGTTAGAGGCTTGGAGCTATTAATGCTACTGG
TTATGTAACTAATGTGACTAGAAGATATATCAGTGCATGGTTTAACTTGT
ACCTCTCTTTTGTTAAACTACAGACAGGACCCCTTGCTGCTTATTATAAG
CTATCTCTCAATCGTGTGCTTGTGGTACTTTCTTCTTCTGGCTTTAAGTT
TTTTTTGTACGCAGATAAGGCTTCGGAATTGAGAAGCGAGCTTGACTTTG
TTAAAAGATATCGTGATGGAAACATCATTCTATCAGATGACAACATGCAA
AAGAAAGATGATTTGTTGAAATATCTAAAAGGTCAAGGTTTCAAAGACAA
TACGGAGTATCTAGCATCCCTGAAACTTGTATCCTTAACGATAGAGAGTG
AGAAAGCCCTTCAAACAGATTTGGAAAGGGTCAAAGAGGAGTTTACAAAG
GTGGTAAAAAAACCTGCAGCAACAGTATGGTTGGAAGATCTAGAAGTTCT
TGAAAATGAACTACTTAAGGATAAATATTTTCAGCTTACCGCCTGATGAC
AATAAAGACGTGCCAACCCTTGACCCATCAAATTTAACACTTAGCGGCAT
TGACAGGGTTTAAGCTCTTGTGTGGTTTTCGAAAGCTTAGATCAACAAGG
CAAAGAAGTTAAACCTGGAAGGTACGTAGTTTGTTTGAATATTTTTACTA
ACATTACTCTTCTTTCCTTCTTTAAAAGTTTAGGTGGTAAATTATTGAAT
TGTTTTCTTTGGGATGATTTTTTTGTTTGCCATGTAGGTGTTCTCCAGTA
ATACCCATGGTCCTTGTTAATGTTTGTGAAGGAATTGGAGTTGGGTGGTA
TACCATTGTCCCCAATTACCCCCCGATACACATCATCAAGAACATAATAC
ATTTAATTGATTCCAAAGGGAATGTAGACAAATTGCCAGTGGAAATGCGC
CCGTGGTATAAAGGTTTTCATGGAAGGATAGAGGGTAGCCAGTCCAGCGA
TGGCGACTACACCTCTTACGGGTGCATACAAGAAAGCAACGGGATGTTAA
AGATTACGGAGTTACCAATCCGTAAGTGGACAGACAAGTATTTGAAATTT
CTTAATTCAGTCGCCGAACACAATGCAGACGCCAAAGATCCTTTCATTAA
GGTAAAATTTTCCAGTATAAAAAGTTAACATCAAATTTGGTTTGTAATTT
GTAGTTATTTTCAGTTTCGAATAAAACAGTAATACATGCTCCAGGGTTAC
AAAAAATACGGAGATGATACGAGTCCAATAGACATCCGTGTCAAGCTGTC
GGGTAAACAACTTAGGGAAGCCAAGCAAGAGGGTTTGAAAAAAAAGTTCA
AACTTGAAAAGAAACTAAAGACTTCAAACATGGTCTTGTTTCAAAAAGAC
GACTGCCTGAAGCTCTATCGTACCCCACAACAGAGTATGATTTAACATCA
CTATTATTATTATTTTGTGCTTCTTGTAAAAATATATAACCTGTCTTTGG
CTTTGTTTCCGTTGTGTCTCCAAACATTTTAGTATTTTTACACTCCCTCC
GTTCAGAACTTCACTCGCTGTTTACATTTTGAATGCAGTCTAACTGTTCG
TGAAAAGTTGCGAGTGGCAGGTGGGTTGGAGACTTTCGAGTTTCCAGTTC
ATTTTTTTAGATGAATTATGTTGCTGAGGTGTAGTGGGAGGCACTGAGTC
TGAGGGGGAAGGTGCTTAATCGGTTAAGTCGGCTGTTGCTTTTGCACTGC
TGCTCCAAGGCCATGGCTATTTGTAGGTTTGGGCAATCCCGGCGATAAGT
ACGAAGGAACTAGGCAGGCACAATGTACTATTCTACAGATTATACATTTA
GTGGCCACAATTTGAGATTTTTAGTCTTCGTGTTTGTTGTTTCGATAACA
AGTTTCAGATTCTCGTTTTTTGTTTGAAGCAGGCGGGGTTTTAGATGATT
GATGCTTTTGCTGGTGCATTGCAATGAACACGGTCCAATGCAAAGCTATA
CTTGGGCAAGGCATGTAAATCTTCGCGGATGTTGCTTTGTTTATTGTCAT
TTTTCATGTTTGTTTGTGAAGTTCAGGGAAGTTTGTTATTTCAGGTTTCG
TTGGTGAAGTTCCCGTTTTTCTTGCAAAGCCTCAAACTTACATGAATTTG
AGAGGTGAATCTGTAAATGATTGA

protein sequence of MDP0000177096

>MDP0000177096 ID=MDP0000177096; Name=MDP0000177096; organism=Malus x domestica; type=polypeptide; length=435bp
MPXASGLRTSALGPSATVTLAVSTTVSRNSPPPVRRRGCSSEHQNVQSQS
PHLLSDALTGYARQGHCNEHGPMQSYTWARHVIHLSSLAIYVYYFHWDFN
EYTEMTGPLAAYYKLSLNRVLVVLSSSGFKFFLYADKASELRSELDFVKR
YRDGNIILSDDNMQKKDDLLKYLKGQGFKDNTEYLASLKLVSLTIESEKA
LQTDLERVKEEFTKVGLSSCVVFESLDQQGKEVKPGRCSPVIPMVLVNVC
EGIGVGWYTIVPNYPPIHIIKNIIHLIDSKGNVDKLPVEMRPWYKGFHGR
IEGSQSSDGDYTSYGCIQESNGMLKITELPIRKWTDKYLKFLNSVAEHNA
DAKDPFIKGYKKYGDDTSPIDIRVKLSGKQLREAKQEGLGNPGDKYEGTR
QAQWKFVISGFVGEVPVFLAKPQTYMNLRGESVND

mRNA from alignment at chr11:500030..503803-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000177096 ID=MDP0000177096; Name=MDP0000177096; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr11:500030..503803- (Malus x domestica

mRNA from alignment at MDC006313.383:792..4565-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000177096 ID=MDP0000177096; Name=MDP0000177096; organism=Malus x domestica; type=mRNA; length=3774bp; location=Sequence derived from: MDC006313.383:792..4565- (Malus x domestica
ATGCCTMAAGCGAGCGGCTTAGTGAGTATAATGAAGCTAGTATAATCATA
TAATATATTATATACTATTTAATGCACATATTAATGTATGCAACATTGCT
CAAATAAAAAGTTATTYGACTAAACGAATCAACACCACTCCACGTACCAA
AGGAGAGSTAAATTTTTATTTTGTCATTTTAAATATTTGGCGTCTTTTAT
GGTCAATTCAATAAAGGACATATGCATCCAACAAAAGAAAAATAAATGAT
AAGCACACAATCTACGTAATCTTTCACACATCTCTTAATCTTGACTTTTA
TTTTTTATAATTTATTCWATTTAGTTGTTAAAAATAAAAAGTAACGTGCA
AGAAGATAAAAATGGTTCGAAAATAATTTTACAAACAAATACAGGGCATA
GTGGAAAAGTAATTTTCTTTTAATTTAGTGGGTGGGGCATGTGACCTTTT
CTCACCAAAAAATAAAAAAATAAAAAAYTGTGGGCGGGAAGAGTAACAGT
CGGAGTATAAACAGAAACTCCGAAGAGAACGAGTGCGCTTGGGCCTTCAG
CAACCGTGACTTTAGCAGTCTCGACGACTGTCTCACGAAATTCACCACCG
CCGGTACGCCGCCGTGGTTGCTCGTCAGAGCACCAAAACGTCCAGAGCCA
AAGCCCGCACCTTCTCTCTGACGCTCTCACCGGTTATGCGAGGCAAGGTA
TTAATCTCAAACTTGACAAGTATATGCTTTGCATTCTGCAATACGCCTCT
TGTCTTTGGCTTTGTTTCCGTTGTGTCTCCAAAAATTTTAGTAATTTTAC
ACTCCGTTAAGTAGTTCACTCGCTGTTTACATTTCGAATGCAGTGTAACT
GTTTGTGAAAAGTTGCGAGTGGCAGGTGGGTTGGAGACTTTCGAGTTTCC
AGTTCATTTTTTTAGATGAATTATGGTGCTGAGGTGTAGTGGGAGGCACT
GAGTCTGAGGGGGAAGATGCTTAATCGGTTAAGTCGGCTGTTGCTTTTGC
ACTGCTGCTCCGAGGCCATGGCTATTTGTAGGTTTGGGCAATCCCGGCGA
TAAGTACCAAGGAACTAGGCACAATGTACTATTCCAGATTATACTTTTAG
TGGCTACAATTTGAGATTTTTAGTTTTTGTGTTTGTTGTTTCGATAACAA
GTTTCAGATTCTCGTTTTTTTGTTTGAAGCAGGCGGGGTTTTAGATGATT
GATGCGTTTGCTGGTTCGCAGGGCATTGCAATGAACACGGTCCAATGCAA
AGCTATACTTGGGCAAGGCATGTAAATCTTTGCGTATGTTACTTTGTTTA
TTGTCATTTTTCATGTTTGTTTGTGAAGTTCAGGGAAGTTTGTTATTTCA
GGTTTCGTGGGTGAAGTTCTGGTTTTTCTTGCAAAGCCTCAAACTTAAAT
GAATTTGAGAGATGAATCTGCAAGTGACTGATGTACTTAATTATGTTCTT
GTACTTCTATTTGGAAAGGTTATTCATTTATCTAGCCTTGCTATTTATGT
TTATTACTTCCACTGGGATTTCAATGAATATACTGAGATGGTATTTGTTC
TGTGCATTTCATTCTTTCTAGCACACTTCCAAAGCCATTTGCAATTCATT
AACTGCTTCACTTTTGTATGTTAGAGGCTTGGAGCTATTAATGCTACTGG
TTATGTAACTAATGTGACTAGAAGATATATCAGTGCATGGTTTAACTTGT
ACCTCTCTTTTGTTAAACTACAGACAGGACCCCTTGCTGCTTATTATAAG
CTATCTCTCAATCGTGTGCTTGTGGTACTTTCTTCTTCTGGCTTTAAGTT
TTTTTTGTACGCAGATAAGGCTTCGGAATTGAGAAGCGAGCTTGACTTTG
TTAAAAGATATCGTGATGGAAACATCATTCTATCAGATGACAACATGCAA
AAGAAAGATGATTTGTTGAAATATCTAAAAGGTCAAGGTTTCAAAGACAA
TACGGAGTATCTAGCATCCCTGAAACTTGTATCCTTAACGATAGAGAGTG
AGAAAGCCCTTCAAACAGATTTGGAAAGGGTCAAAGAGGAGTTTACAAAG
GTGGTAAAAAAACCTGCAGCAACAGTATGGTTGGAAGATCTAGAAGTTCT
TGAAAATGAACTACTTAAGGATAAATATTTTCAGCTTACCGCCTGATGAC
AATAAAGACGTGCCAACCCTTGACCCATCAAATTTAACACTTAGCGGCAT
TGACAGGGTTTAAGCTCTTGTGTGGTTTTCGAAAGCTTAGATCAACAAGG
CAAAGAAGTTAAACCTGGAAGGTACGTAGTTTGTTTGAATATTTTTACTA
ACATTACTCTTCTTTCCTTCTTTAAAAGTTTAGGTGGTAAATTATTGAAT
TGTTTTCTTTGGGATGATTTTTTTGTTTGCCATGTAGGTGTTCTCCAGTA
ATACCCATGGTCCTTGTTAATGTTTGTGAAGGAATTGGAGTTGGGTGGTA
TACCATTGTCCCCAATTACCCCCCGATACACATCATCAAGAACATAATAC
ATTTAATTGATTCCAAAGGGAATGTAGACAAATTGCCAGTGGAAATGCGC
CCGTGGTATAAAGGTTTTCATGGAAGGATAGAGGGTAGCCAGTCCAGCGA
TGGCGACTACACCTCTTACGGGTGCATACAAGAAAGCAACGGGATGTTAA
AGATTACGGAGTTACCAATCCGTAAGTGGACAGACAAGTATTTGAAATTT
CTTAATTCAGTCGCCGAACACAATGCAGACGCCAAAGATCCTTTCATTAA
GGTAAAATTTTCCAGTATAAAAAGTTAACATCAAATTTGGTTTGTAATTT
GTAGTTATTTTCAGTTTCGAATAAAACAGTAATACATGCTCCAGGGTTAC
AAAAAATACGGAGATGATACGAGTCCAATAGACATCCGTGTCAAGCTGTC
GGGTAAACAACTTAGGGAAGCCAAGCAAGAGGGTTTGAAAAAAAAGTTCA
AACTTGAAAAGAAACTAAAGACTTCAAACATGGTCTTGTTTCAAAAAGAC
GACTGCCTGAAGCTCTATCGTACCCCACAACAGAGTATGATTTAACATCA
CTATTATTATTATTTTGTGCTTCTTGTAAAAATATATAACCTGTCTTTGG
CTTTGTTTCCGTTGTGTCTCCAAACATTTTAGTATTTTTACACTCCCTCC
GTTCAGAACTTCACTCGCTGTTTACATTTTGAATGCAGTCTAACTGTTCG
TGAAAAGTTGCGAGTGGCAGGTGGGTTGGAGACTTTCGAGTTTCCAGTTC
ATTTTTTTAGATGAATTATGTTGCTGAGGTGTAGTGGGAGGCACTGAGTC
TGAGGGGGAAGGTGCTTAATCGGTTAAGTCGGCTGTTGCTTTTGCACTGC
TGCTCCAAGGCCATGGCTATTTGTAGGTTTGGGCAATCCCGGCGATAAGT
ACGAAGGAACTAGGCAGGCACAATGTACTATTCTACAGATTATACATTTA
GTGGCCACAATTTGAGATTTTTAGTCTTCGTGTTTGTTGTTTCGATAACA
AGTTTCAGATTCTCGTTTTTTGTTTGAAGCAGGCGGGGTTTTAGATGATT
GATGCTTTTGCTGGTGCATTGCAATGAACACGGTCCAATGCAAAGCTATA
CTTGGGCAAGGCATGTAAATCTTCGCGGATGTTGCTTTGTTTATTGTCAT
TTTTCATGTTTGTTTGTGAAGTTCAGGGAAGTTTGTTATTTCAGGTTTCG
TTGGTGAAGTTCCCGTTTTTCTTGCAAAGCCTCAAACTTACATGAATTTG
AGAGGTGAATCTGTAAATGATTGA

Coding sequence (CDS) from alignment at MDC006313.383:792..4565-

>MDP0000177096 ID=MDP0000177096; Name=MDP0000177096; organism=Malus x domestica; type=CDS; length=1308bp; location=Sequence derived from: MDC006313.383:792..4565- (Malus x domestica
ATGCCTMAAGCGAGCGGCTTAAGAACGAGTGCGCTTGGGCCTTCAGCAAC
CGTGACTTTAGCAGTCTCGACGACTGTCTCACGAAATTCACCACCGCCGG
TACGCCGCCGTGGTTGCTCGTCAGAGCACCAAAACGTCCAGAGCCAAAGC
CCGCACCTTCTCTCTGACGCTCTCACCGGTTATGCGAGGCAAGGGCATTG
CAATGAACACGGTCCAATGCAAAGCTATACTTGGGCAAGGCATGTTATTC
ATTTATCTAGCCTTGCTATTTATGTTTATTACTTCCACTGGGATTTCAAT
GAATATACTGAGATGACAGGACCCCTTGCTGCTTATTATAAGCTATCTCT
CAATCGTGTGCTTGTGGTACTTTCTTCTTCTGGCTTTAAGTTTTTTTTGT
ACGCAGATAAGGCTTCGGAATTGAGAAGCGAGCTTGACTTTGTTAAAAGA
TATCGTGATGGAAACATCATTCTATCAGATGACAACATGCAAAAGAAAGA
TGATTTGTTGAAATATCTAAAAGGTCAAGGTTTCAAAGACAATACGGAGT
ATCTAGCATCCCTGAAACTTGTATCCTTAACGATAGAGAGTGAGAAAGCC
CTTCAAACAGATTTGGAAAGGGTCAAAGAGGAGTTTACAAAGGTGGGTTT
AAGCTCTTGTGTGGTTTTCGAAAGCTTAGATCAACAAGGCAAAGAAGTTA
AACCTGGAAGGTGTTCTCCAGTAATACCCATGGTCCTTGTTAATGTTTGT
GAAGGAATTGGAGTTGGGTGGTATACCATTGTCCCCAATTACCCCCCGAT
ACACATCATCAAGAACATAATACATTTAATTGATTCCAAAGGGAATGTAG
ACAAATTGCCAGTGGAAATGCGCCCGTGGTATAAAGGTTTTCATGGAAGG
ATAGAGGGTAGCCAGTCCAGCGATGGCGACTACACCTCTTACGGGTGCAT
ACAAGAAAGCAACGGGATGTTAAAGATTACGGAGTTACCAATCCGTAAGT
GGACAGACAAGTATTTGAAATTTCTTAATTCAGTCGCCGAACACAATGCA
GACGCCAAAGATCCTTTCATTAAGGGTTACAAAAAATACGGAGATGATAC
GAGTCCAATAGACATCCGTGTCAAGCTGTCGGGTAAACAACTTAGGGAAG
CCAAGCAAGAGGGTTTGGGCAATCCCGGCGATAAGTACGAAGGAACTAGG
CAGGCACAATGGAAGTTTGTTATTTCAGGTTTCGTTGGTGAAGTTCCCGT
TTTTCTTGCAAAGCCTCAAACTTACATGAATTTGAGAGGTGAATCTGTAA
ATGATTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001328	Pept_tRNA_hydro
IPR002205	Topo_IIA_dom_A
IPR013758	Topo_IIA_A/C_ab
IPR013760	Topo_IIA-like_dom_sf
IPR024946	Arg_repress-like_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0004045	aminoacyl-tRNA hydrolase activity
GO:0003677	DNA binding
GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005694	chromosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006265	DNA topological change
GO:0006259	DNA metabolic process