MDP0000188529, MDP0000188529 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000188529
Unique NameMDP0000188529
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1866
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.02012-04-02
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000188529_exon_1MDP0000188529_exon_1Malus x domesticaCDS
MDP0000188529_exon_2MDP0000188529_exon_2Malus x domesticaCDS
MDP0000188529_exon_3MDP0000188529_exon_3Malus x domesticaCDS
MDP0000188529_exon_4MDP0000188529_exon_4Malus x domesticaCDS
MDP0000188529_exon_5MDP0000188529_exon_5Malus x domesticaCDS
MDP0000188529_exon_6MDP0000188529_exon_6Malus x domesticaCDS
MDP0000188529_exon_7MDP0000188529_exon_7Malus x domesticaCDS
MDP0000188529_exon_8MDP0000188529_exon_8Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000188529MDP0000188529Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001328Peptidyl-tRNA hydrolaseGENE3D3.40.50.1470no descriptioncoord: 67..255
score: 1.7
IPR001328Peptidyl-tRNA hydrolaseHAMAPMF_00083Pept_tRNA_hydro_bactcoord: 70..245
score: 31
IPR001328Peptidyl-tRNA hydrolasePANTHERPTHR17224FAMILY NOT NAMEDcoord: 25..259
score: 1.9
IPR001328Peptidyl-tRNA hydrolasePFAMPF01195Pept_tRNA_hydrocoord: 72..249
score: 2.5
IPR001328Peptidyl-tRNA hydrolaseTIGRFAMsTIGR00447pth: peptidyl-tRNA hydrolasecoord: 72..248
score: 3.2
IPR001328Peptidyl-tRNA hydrolaseSUPERFAMILY53178Peptidyl-tRNA hydrolase-likecoord: 68..255
score: 2.4
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01195PEPT_TRNA_HYDROL_1coord: 83..96
score
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01196PEPT_TRNA_HYDROL_2coord: 173..183
score
NoneNo IPR availableSEGsegsegcoord: 41..61
score
NoneNo IPR availableSEGsegsegcoord: 13..24
score
NoneNo IPR availableSEGsegsegcoord: 89..103
score
NoneNo IPR availableSEGsegsegcoord: 48..63
score
NoneNo IPR availableSEGsegsegcoord: 86..97
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000188529 ID=MDP0000188529; Name=MDP0000188529; organism=Malus x domestica; type=mRNA; length=1866bp
ATGAACGTTGCTGCTTCCCTATCATCCATCGCCACCGTCCGCTTYCCCAA
TTGCCACCGCTGCTTCCGCTTCTCAAAACCCCTACTTCGATCTCCGTCGC
TTCAGATAATGTCCCGAATCTCGTCATCACCATCTCCCTCCACCGTATCC
GCGGCGCCAGTGAGCTCGGACACGGCGCCTGTCGAAGCCAAGAAGCCGCC
CAAGCAGCCGTGGCTCATCGTCGGACTCGGAAACCCCGGGAAGAAGTACA
ACAGCACCCGCCACAATGTCCGTACGGCCCTCTTTGGAATTGACACACAA
AGTTCAATACTATGATCCTCATACTTGTGTTAAATCTTGATTATTTGATT
ACCCAATTGCTAATTTTCTCGTAAATTTTGAAATYCAAAAGCTTGCAATT
TATGGTGGTGGTGCTGTTTTGCAGGTGGGTTTTGAGATGGTAGATGCCAT
AGCTGAAGCTGAAGGGATACCTTTGAGCAGTGTTTCTTTCAAAGCCCTTG
TTGGAAAAGGTTTGTTTGCTCTAAATTTGGTTATCTRTTTCAAATTTACA
AGATWGYATTTGGAAAAGTTTTGTTGTGTTGATTCAATTTTCTYTACTTG
TGTGATTATCTGCATCTGGTGAAATATYGTTTGATTGATTGTACATGTAG
TTACTTAACCAAACCCGYAAGGGGCCGCAACTAAATTCGCTAAATTGTTT
GATCGTRTTCACTTTTGCATAATTTTTCTGAATGTATCTTTTYTTAAGTC
TCTACCATTTACGATCTCATTTTGTTTATGAATTTGTGGCTGCTTTACAG
CGCTTATGGATGAATAGTTCTCTACTTTGTTTCCAAGATCCCCAATTGTT
AGGGAAAGTTATAATCTTCATAGAGCTTTGTTTTCATATTTTCCAGGCCT
TATTGGCGATGTTCCGGTTATATTTGCCAAGCCACAAACTTACATGAATA
AAAGCGGTGAGTCTGTAAGTAAGCTATCTCAGGATTTGTCTTGARACTTG
TATATGTTTCGGTGATAATTGGTTGATAATTGGACCCTTTGTTGAAGGTT
GGATCGATTGTTTCRTATTACAAGATTCCATTGAAGCAAGTACTTGTGGT
GCAGTTTCTCTCCTTTACTTAATCACTACCATTCTATYTCTCTYTTTTTA
CCTCATTTTCCTTCTCSGAGTCAGAGTGTYCTGTTTCTYTGCCGTGCCTT
WARKTTTTTGGTTCCCGTTTTCAGATATTTGATGATCTAGATCTTCCCTT
TGGAAAGCTGCGGATGTTGCCAAAAGGTGGACAYGGAGGACACAATGGGT
AAATATACARTGCCATCGTAGTAGKCTGCCTGTTAGATTTAACTCAGTAT
GTWAAGGAAAATATATTTAAAATGGCATAATGACTCTTGACTGGTTCCTG
TCATCTTTTCTCTTGCAGGATGAGGAGTATCATTGATCACTTTAAAGGGA
GTCGAGATTTTCCTCGYTTAAGAATCGGTACTTTCCCTAGACCACCAAAA
GTGTTTCCCTAATACTTCTTTCTATATTACGCATTAGGGAAAACGAACTA
AATGTGTAAAAAAAWTTCATTCAATTGGTGAAATTTCTGTAGGCATTGGA
CGTCCTCCTGGGAAAATGGATCCTGTCAACTTTGTTCTTCGTCCATTTAC
TAAWCAAGAACAACACGAGGTTTGTAAAGTTTCTAATGCAATCTCTAGAG
AGGCTTATGTATAGATTAATCCGTGATTCTAACTACTATAAATGCTTTTC
AGTTGAATTTTACGTTTCAAGATGGTGTAGAAGCGGTGCGTATTCTTTTG
CTCGAGGGGTTCAACAAAAGCGCAACATTCGTTAATACTGCCAAACCCTT
GGAACAATGCGGTTAA
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protein sequence of MDP0000188529

>MDP0000188529 ID=MDP0000188529; Name=MDP0000188529; organism=Malus x domestica; type=polypeptide; length=261bp
MNVAASLSSIATVRFPNCHRCFRFSKPLLRSPSLQIMSRISSSPSPSTVS
AAPVSSDTAPVEAKKPPKQPWLIVGLGNPGKKYNSTRHNVGFEMVDAIAE
AEGIPLSSVSFKALVGKGLIGDVPVIFAKPQTYMNKSGESVGSIVSYYKI
PLKQIFDDLDLPFGKLRMLPKGGHGGHNGMRSIIDHFKGSRDFPRLRIGI
GRPPGKMDPVNFVLRPFTXQEQHELNFTFQDGVEAVRILLLEGFNKSATF
VNTAKPLEQCG
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mRNA from alignment at chr14:27369632..27371497+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000188529 ID=MDP0000188529; Name=MDP0000188529; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr14:27369632..27371497+ (Malus x domestica
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mRNA from alignment at MDC008733.219:3232..5097+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000188529 ID=MDP0000188529; Name=MDP0000188529; organism=Malus x domestica; type=mRNA; length=1866bp; location=Sequence derived from: MDC008733.219:3232..5097+ (Malus x domestica
ATGAACGTTGCTGCTTCCCTATCATCCATCGCCACCGTCCGCTTYCCCAA
TTGCCACCGCTGCTTCCGCTTCTCAAAACCCCTACTTCGATCTCCGTCGC
TTCAGATAATGTCCCGAATCTCGTCATCACCATCTCCCTCCACCGTATCC
GCGGCGCCAGTGAGCTCGGACACGGCGCCTGTCGAAGCCAAGAAGCCGCC
CAAGCAGCCGTGGCTCATCGTCGGACTCGGAAACCCCGGGAAGAAGTACA
ACAGCACCCGCCACAATGTCCGTACGGCCCTCTTTGGAATTGACACACAA
AGTTCAATACTATGATCCTCATACTTGTGTTAAATCTTGATTATTTGATT
ACCCAATTGCTAATTTTCTCGTAAATTTTGAAATYCAAAAGCTTGCAATT
TATGGTGGTGGTGCTGTTTTGCAGGTGGGTTTTGAGATGGTAGATGCCAT
AGCTGAAGCTGAAGGGATACCTTTGAGCAGTGTTTCTTTCAAAGCCCTTG
TTGGAAAAGGTTTGTTTGCTCTAAATTTGGTTATCTRTTTCAAATTTACA
AGATWGYATTTGGAAAAGTTTTGTTGTGTTGATTCAATTTTCTYTACTTG
TGTGATTATCTGCATCTGGTGAAATATYGTTTGATTGATTGTACATGTAG
TTACTTAACCAAACCCGYAAGGGGCCGCAACTAAATTCGCTAAATTGTTT
GATCGTRTTCACTTTTGCATAATTTTTCTGAATGTATCTTTTYTTAAGTC
TCTACCATTTACGATCTCATTTTGTTTATGAATTTGTGGCTGCTTTACAG
CGCTTATGGATGAATAGTTCTCTACTTTGTTTCCAAGATCCCCAATTGTT
AGGGAAAGTTATAATCTTCATAGAGCTTTGTTTTCATATTTTCCAGGCCT
TATTGGCGATGTTCCGGTTATATTTGCCAAGCCACAAACTTACATGAATA
AAAGCGGTGAGTCTGTAAGTAAGCTATCTCAGGATTTGTCTTGARACTTG
TATATGTTTCGGTGATAATTGGTTGATAATTGGACCCTTTGTTGAAGGTT
GGATCGATTGTTTCRTATTACAAGATTCCATTGAAGCAAGTACTTGTGGT
GCAGTTTCTCTCCTTTACTTAATCACTACCATTCTATYTCTCTYTTTTTA
CCTCATTTTCCTTCTCSGAGTCAGAGTGTYCTGTTTCTYTGCCGTGCCTT
WARKTTTTTGGTTCCCGTTTTCAGATATTTGATGATCTAGATCTTCCCTT
TGGAAAGCTGCGGATGTTGCCAAAAGGTGGACAYGGAGGACACAATGGGT
AAATATACARTGCCATCGTAGTAGKCTGCCTGTTAGATTTAACTCAGTAT
GTWAAGGAAAATATATTTAAAATGGCATAATGACTCTTGACTGGTTCCTG
TCATCTTTTCTCTTGCAGGATGAGGAGTATCATTGATCACTTTAAAGGGA
GTCGAGATTTTCCTCGYTTAAGAATCGGTACTTTCCCTAGACCACCAAAA
GTGTTTCCCTAATACTTCTTTCTATATTACGCATTAGGGAAAACGAACTA
AATGTGTAAAAAAAWTTCATTCAATTGGTGAAATTTCTGTAGGCATTGGA
CGTCCTCCTGGGAAAATGGATCCTGTCAACTTTGTTCTTCGTCCATTTAC
TAAWCAAGAACAACACGAGGTTTGTAAAGTTTCTAATGCAATCTCTAGAG
AGGCTTATGTATAGATTAATCCGTGATTCTAACTACTATAAATGCTTTTC
AGTTGAATTTTACGTTTCAAGATGGTGTAGAAGCGGTGCGTATTCTTTTG
CTCGAGGGGTTCAACAAAAGCGCAACATTCGTTAATACTGCCAAACCCTT
GGAACAATGCGGTTAA
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Coding sequence (CDS) from alignment at MDC008733.219:3232..5097+

>MDP0000188529 ID=MDP0000188529; Name=MDP0000188529; organism=Malus x domestica; type=CDS; length=786bp; location=Sequence derived from: MDC008733.219:3232..5097+ (Malus x domestica
ATGAACGTTGCTGCTTCCCTATCATCCATCGCCACCGTCCGCTTYCCCAA
TTGCCACCGCTGCTTCCGCTTCTCAAAACCCCTACTTCGATCTCCGTCGC
TTCAGATAATGTCCCGAATCTCGTCATCACCATCTCCCTCCACCGTATCC
GCGGCGCCAGTGAGCTCGGACACGGCGCCTGTCGAAGCCAAGAAGCCGCC
CAAGCAGCCGTGGCTCATCGTCGGACTCGGAAACCCCGGGAAGAAGTACA
ACAGCACCCGCCACAATGTGGGTTTTGAGATGGTAGATGCCATAGCTGAA
GCTGAAGGGATACCTTTGAGCAGTGTTTCTTTCAAAGCCCTTGTTGGAAA
AGGCCTTATTGGCGATGTTCCGGTTATATTTGCCAAGCCACAAACTTACA
TGAATAAAAGCGGTGAGTCTGTTGGATCGATTGTTTCRTATTACAAGATT
CCATTGAAGCAAATATTTGATGATCTAGATCTTCCCTTTGGAAAGCTGCG
GATGTTGCCAAAAGGTGGACAYGGAGGACACAATGGGATGAGGAGTATCA
TTGATCACTTTAAAGGGAGTCGAGATTTTCCTCGYTTAAGAATCGGCATT
GGACGTCCTCCTGGGAAAATGGATCCTGTCAACTTTGTTCTTCGTCCATT
TACTAAWCAAGAACAACACGAGTTGAATTTTACGTTTCAAGATGGTGTAG
AAGCGGTGCGTATTCTTTTGCTCGAGGGGTTCAACAAAAGCGCAACATTC
GTTAATACTGCCAAACCCTTGGAACAATGCGGTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001328Pept_tRNA_hydro
IPR018171Pept_tRNA_hydro_CS
Vocabulary: Molecular Function
TermDefinition
GO:0004045aminoacyl-tRNA hydrolase activity