MDP0000194123, MDP0000194123 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000194123
Unique NameMDP0000194123
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1968
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000194123_exon_1MDP0000194123_exon_1Malus x domesticaCDS
MDP0000194123_exon_2MDP0000194123_exon_2Malus x domesticaCDS
MDP0000194123_exon_3MDP0000194123_exon_3Malus x domesticaCDS
MDP0000194123_exon_4MDP0000194123_exon_4Malus x domesticaCDS
MDP0000194123_exon_5MDP0000194123_exon_5Malus x domesticaCDS
MDP0000194123_exon_6MDP0000194123_exon_6Malus x domesticaCDS
MDP0000194123_exon_7MDP0000194123_exon_7Malus x domesticaCDS
MDP0000194123_exon_8MDP0000194123_exon_8Malus x domesticaCDS
MDP0000194123_exon_9MDP0000194123_exon_9Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000194123MDP0000194123Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003337Trehalose-phosphatasePFAMPF02358Trehalose_PPasecoord: 94..337
score: 6.9
IPR003337Trehalose-phosphataseTIGRFAMsTIGR00685T6PP: trehalose-phosphatasecoord: 88..347
score: 7.1
IPR006379HAD-superfamily hydrolase, subfamily IIBTIGRFAMsTIGR01484HAD-SF-IIB: HAD hydrolase, family IIBcoord: 93..310
score: 3.6
IPR023214HAD-like domainGENE3D3.40.50.1000no descriptioncoord: 260..356
score: 3
IPR023214HAD-like domainSUPERFAMILY56784HAD-likecoord: 91..354
score: 2.4
NoneNo IPR availableCOILcoilcoiled-coilcoord: 198..219
score
NoneNo IPR availablePANTHERPTHR10788TREHALOSE-6-PHOSPHATE SYNTHASEcoord: 62..359
score: 2.6e
NoneNo IPR availableSEGsegsegcoord: 24..38
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000194123 ID=MDP0000194123; Name=MDP0000194123; organism=Malus x domestica; type=mRNA; length=1968bp
ATGACAAACTCGGCGAAGCTGAACCGGACAATGGGACTCCAAAGGTCATC
AACTTCCAATAAGCAGAAGGTGCAACCCATCACGAAAGTAGTTAAGAATG
ACGAGAACAGTGTCGATCTTTCCTTAGCATCAATCACCTCAAACTTGCAT
GATATYTCTACCCCTAATGGACCAATCTCCTCAGATTTAGCTTATAATTC
ATGGGTGGTACGTTTTAGCCATTTGGACTGAGTTGATGATGATCTTATGA
CAATGCTTACTATATACCATTGCTTTCATTATCCCKGTTCTTTTTTATTT
TATAATTTATTTTCGGGGGCTTATATGTTTAGGCCGAGCACCCTTCTGCA
TTAGGCTCATTTGATCGGATGATGAAAGCAGCAAAAGGGAAGCGGGTGGT
TGTTTTCCTAGACTACGATGGGACCCTTTCACCAATTGTTGATGATCCTG
ATCGTGCCTTCATGTCTGATGAGGTACAATCTTTAATTTTCTTGATAACA
AGATTCCTATCTTTACACGGCTCAATCCACCCTAACTATATTGACTATGT
TCCATATGCCGGCAGATGCGTGCAGCAGTGCGGGAAGTTGCCAAGTATTT
TCCAACGGCAGTAATTAGTGGAAGGAGTAGAGATAAGGTAATGAATRAGT
CTAACATCAGTATGATCTCGAGCAAATTTGAGATATTCATCAATAAACAA
TGTGTTGCACATAAAATAATTTTCTCATTTAATTTGGTTCTACAGKTAAA
AGAATTTGTACAGTTAAGTAATGTATATTATGCTGGAAGCCATGGGATGG
ATATATTGGTCCCAACAGGGCCACTAAATCCCTGTGATGCCAAGAACCAC
ACTGCAGCCATTGATAAAAAGGTCAGTGATCACTGATCAGTCTAGTTCTA
TGGACTGGCGCAGCCCTAATGTGTGTGTGTGTGTGTGTGTGTGTSGCTTG
GTCAATAACAACACAGTAGTACTATTAACGTTGCAGGAGAGTGACGTTCT
CTTTCAACCTGCTAAAAGATTTCTGCCTGCAATCCAAGAGGTTAGCTAAC
AAGAAATTTAAATGTGCCTTGTGTTTAGTTGGACATACAGAATTCAGATG
CGCCTGTGTTTTTTACACAAGAAATTTCATGTACGTTTTAATTGGAAATG
CAGATACGAACACTGTTAGAGGAGATAACCAGGAAAGTAGAAGGTGCTAG
GGTAGAGGACAACAGATTCTGCATTTCTGTTCATTTCCGCAAGGTCCGGG
ATGAGGTAATTAATTAAGAACATTCAAATTAGCTCTCTATCATATCAATC
CTGTATTTGATCTTCATTGATTTGATAAGTGATGTATGTACAATTGTAGG
ATTATGACATATTAGAAGCAAAGGTGAAGTACGTACTTAAAAACTATCCC
GAATTTCATCTCACCTTGGGCAAAAAGGTAGGGTATATATAAATTTCCTA
AGAAATTCTTCCTTGTAATAAGTTATAACKTGCGTACATATTGTTTTATC
AATAACATGTCTTCATTTGCATCTTTATATATTCAGGTCTTGGAAGTACG
GCCATCCATAGAATGGAACAAAGGTCATGCCCTAGAATATATACTTGACA
CTCTTGGATTCAGCAGTTCCAGTGACGTCCTCCCGYTGTACATTGGGGAC
GATCGGACTGATGAAGATGCTTTCAAGGTACGTACGACATAGTACTGTTT
GATAAATTTTCATACTTRCAGTTAGTTTTGTGGATTCATTCTAGCTACTT
GYTGCGCATACATACAGGTGATACGAAGTAGAGGACTAGGGTTTCCGATA
ATTGTGTCTTCAACCCCGAAGGATACCAAAGCTTGCTATTCCCTGCACGA
TCCGTCAGAAGTTTTAACTTTCTTGTTGCGGCTTGCAAGGTGGAGAAAAG
AGTCTTCTTCTAGCAGGTCACTTGCTCAAATTTGGGGTCCTGGGAATTTA
CCTAGATCAGTCAATTAA
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protein sequence of MDP0000194123

>MDP0000194123 ID=MDP0000194123; Name=MDP0000194123; organism=Malus x domestica; type=polypeptide; length=373bp
MTNSAKLNRTMGLQRSSTSNKQKVQPITKVVKNDENSVDLSLASITSNLH
DISTPNGPISSDLAYNSWVAEHPSALGSFDRMMKAAKGKRVVVFLDYDGT
LSPIVDDPDRAFMSDEMRAAVREVAKYFPTAVISGRSRDKXKEFVQLSNV
YYAGSHGMDILVPTGPLNPCDAKNHTAAIDKKESDVLFQPAKRFLPAIQE
IRTLLEEITRKVEGARVEDNRFCISVHFRKVRDEDYDILEAKVKYVLKNY
PEFHLTLGKKVLEVRPSIEWNKGHALEYILDTLGFSSSSDVLPXYIGDDR
TDEDAFKVIRSRGLGFPIIVSSTPKDTKACYSLHDPSEVLTFLLRLARWR
KESSSSRSLAQIWGPGNLPRSVN
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mRNA from alignment at chr1:27791771..27793738-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000194123 ID=MDP0000194123; Name=MDP0000194123; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr1:27791771..27793738- (Malus x domestica
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mRNA from alignment at MDC011104.266:5837..7804-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000194123 ID=MDP0000194123; Name=MDP0000194123; organism=Malus x domestica; type=mRNA; length=1968bp; location=Sequence derived from: MDC011104.266:5837..7804- (Malus x domestica
ATGACAAACTCGGCGAAGCTGAACCGGACAATGGGACTCCAAAGGTCATC
AACTTCCAATAAGCAGAAGGTGCAACCCATCACGAAAGTAGTTAAGAATG
ACGAGAACAGTGTCGATCTTTCCTTAGCATCAATCACCTCAAACTTGCAT
GATATYTCTACCCCTAATGGACCAATCTCCTCAGATTTAGCTTATAATTC
ATGGGTGGTACGTTTTAGCCATTTGGACTGAGTTGATGATGATCTTATGA
CAATGCTTACTATATACCATTGCTTTCATTATCCCKGTTCTTTTTTATTT
TATAATTTATTTTCGGGGGCTTATATGTTTAGGCCGAGCACCCTTCTGCA
TTAGGCTCATTTGATCGGATGATGAAAGCAGCAAAAGGGAAGCGGGTGGT
TGTTTTCCTAGACTACGATGGGACCCTTTCACCAATTGTTGATGATCCTG
ATCGTGCCTTCATGTCTGATGAGGTACAATCTTTAATTTTCTTGATAACA
AGATTCCTATCTTTACACGGCTCAATCCACCCTAACTATATTGACTATGT
TCCATATGCCGGCAGATGCGTGCAGCAGTGCGGGAAGTTGCCAAGTATTT
TCCAACGGCAGTAATTAGTGGAAGGAGTAGAGATAAGGTAATGAATRAGT
CTAACATCAGTATGATCTCGAGCAAATTTGAGATATTCATCAATAAACAA
TGTGTTGCACATAAAATAATTTTCTCATTTAATTTGGTTCTACAGKTAAA
AGAATTTGTACAGTTAAGTAATGTATATTATGCTGGAAGCCATGGGATGG
ATATATTGGTCCCAACAGGGCCACTAAATCCCTGTGATGCCAAGAACCAC
ACTGCAGCCATTGATAAAAAGGTCAGTGATCACTGATCAGTCTAGTTCTA
TGGACTGGCGCAGCCCTAATGTGTGTGTGTGTGTGTGTGTGTGTSGCTTG
GTCAATAACAACACAGTAGTACTATTAACGTTGCAGGAGAGTGACGTTCT
CTTTCAACCTGCTAAAAGATTTCTGCCTGCAATCCAAGAGGTTAGCTAAC
AAGAAATTTAAATGTGCCTTGTGTTTAGTTGGACATACAGAATTCAGATG
CGCCTGTGTTTTTTACACAAGAAATTTCATGTACGTTTTAATTGGAAATG
CAGATACGAACACTGTTAGAGGAGATAACCAGGAAAGTAGAAGGTGCTAG
GGTAGAGGACAACAGATTCTGCATTTCTGTTCATTTCCGCAAGGTCCGGG
ATGAGGTAATTAATTAAGAACATTCAAATTAGCTCTCTATCATATCAATC
CTGTATTTGATCTTCATTGATTTGATAAGTGATGTATGTACAATTGTAGG
ATTATGACATATTAGAAGCAAAGGTGAAGTACGTACTTAAAAACTATCCC
GAATTTCATCTCACCTTGGGCAAAAAGGTAGGGTATATATAAATTTCCTA
AGAAATTCTTCCTTGTAATAAGTTATAACKTGCGTACATATTGTTTTATC
AATAACATGTCTTCATTTGCATCTTTATATATTCAGGTCTTGGAAGTACG
GCCATCCATAGAATGGAACAAAGGTCATGCCCTAGAATATATACTTGACA
CTCTTGGATTCAGCAGTTCCAGTGACGTCCTCCCGYTGTACATTGGGGAC
GATCGGACTGATGAAGATGCTTTCAAGGTACGTACGACATAGTACTGTTT
GATAAATTTTCATACTTRCAGTTAGTTTTGTGGATTCATTCTAGCTACTT
GYTGCGCATACATACAGGTGATACGAAGTAGAGGACTAGGGTTTCCGATA
ATTGTGTCTTCAACCCCGAAGGATACCAAAGCTTGCTATTCCCTGCACGA
TCCGTCAGAAGTTTTAACTTTCTTGTTGCGGCTTGCAAGGTGGAGAAAAG
AGTCTTCTTCTAGCAGGTCACTTGCTCAAATTTGGGGTCCTGGGAATTTA
CCTAGATCAGTCAATTAA
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Coding sequence (CDS) from alignment at MDC011104.266:5837..7804-

>MDP0000194123 ID=MDP0000194123; Name=MDP0000194123; organism=Malus x domestica; type=CDS; length=1122bp; location=Sequence derived from: MDC011104.266:5837..7804- (Malus x domestica
ATGACAAACTCGGCGAAGCTGAACCGGACAATGGGACTCCAAAGGTCATC
AACTTCCAATAAGCAGAAGGTGCAACCCATCACGAAAGTAGTTAAGAATG
ACGAGAACAGTGTCGATCTTTCCTTAGCATCAATCACCTCAAACTTGCAT
GATATYTCTACCCCTAATGGACCAATCTCCTCAGATTTAGCTTATAATTC
ATGGGTGGCCGAGCACCCTTCTGCATTAGGCTCATTTGATCGGATGATGA
AAGCAGCAAAAGGGAAGCGGGTGGTTGTTTTCCTAGACTACGATGGGACC
CTTTCACCAATTGTTGATGATCCTGATCGTGCCTTCATGTCTGATGAGAT
GCGTGCAGCAGTGCGGGAAGTTGCCAAGTATTTTCCAACGGCAGTAATTA
GTGGAAGGAGTAGAGATAAGKTAAAAGAATTTGTACAGTTAAGTAATGTA
TATTATGCTGGAAGCCATGGGATGGATATATTGGTCCCAACAGGGCCACT
AAATCCCTGTGATGCCAAGAACCACACTGCAGCCATTGATAAAAAGGAGA
GTGACGTTCTCTTTCAACCTGCTAAAAGATTTCTGCCTGCAATCCAAGAG
ATACGAACACTGTTAGAGGAGATAACCAGGAAAGTAGAAGGTGCTAGGGT
AGAGGACAACAGATTCTGCATTTCTGTTCATTTCCGCAAGGTCCGGGATG
AGGATTATGACATATTAGAAGCAAAGGTGAAGTACGTACTTAAAAACTAT
CCCGAATTTCATCTCACCTTGGGCAAAAAGGTCTTGGAAGTACGGCCATC
CATAGAATGGAACAAAGGTCATGCCCTAGAATATATACTTGACACTCTTG
GATTCAGCAGTTCCAGTGACGTCCTCCCGYTGTACATTGGGGACGATCGG
ACTGATGAAGATGCTTTCAAGGTGATACGAAGTAGAGGACTAGGGTTTCC
GATAATTGTGTCTTCAACCCCGAAGGATACCAAAGCTTGCTATTCCCTGC
ACGATCCGTCAGAAGTTTTAACTTTCTTGTTGCGGCTTGCAAGGTGGAGA
AAAGAGTCTTCTTCTAGCAGGTCACTTGCTCAAATTTGGGGTCCTGGGAA
TTTACCTAGATCAGTCAATTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003337Trehalose_PPase
IPR006379HAD-SF_hydro_IIB
IPR023214HAD_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0005992trehalose biosynthetic process
GO:0008152metabolic process