MDP0000208635, MDP0000208635 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000208635
Unique NameMDP0000208635
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length3160
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000208635_exon_1MDP0000208635_exon_1Malus x domesticaCDS
MDP0000208635_exon_2MDP0000208635_exon_2Malus x domesticaCDS
MDP0000208635_exon_3MDP0000208635_exon_3Malus x domesticaCDS
MDP0000208635_exon_4MDP0000208635_exon_4Malus x domesticaCDS
MDP0000208635_exon_5MDP0000208635_exon_5Malus x domesticaCDS
MDP0000208635_exon_6MDP0000208635_exon_6Malus x domesticaCDS
MDP0000208635_exon_7MDP0000208635_exon_7Malus x domesticaCDS
MDP0000208635_exon_8MDP0000208635_exon_8Malus x domesticaCDS
MDP0000208635_exon_9MDP0000208635_exon_9Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000208635MDP0000208635Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013216Methyltransferase type 11PFAMPF08241Methyltransf_11coord: 189..285
score: 4.8
NoneNo IPR availableGENE3D3.40.50.150no descriptioncoord: 167..334
score: 1.5
NoneNo IPR availablePANTHERPTHR10108FAMILY NOT NAMEDcoord: 75..332
score: 5.2
NoneNo IPR availablePANTHERPTHR10108:SF157 METHYLTRANSFERASE-RELATEDcoord: 75..332
score: 5.2
NoneNo IPR availableSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 146..351
score: 6.1
NoneNo IPR availableSEGsegsegcoord: 7..23
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000208635 ID=MDP0000208635; Name=MDP0000208635; organism=Malus x domestica; type=mRNA; length=3160bp
ATGGAGACGGTGGTCGGCAACCTCTGCTCCCCGTTTCTTCTGAGTCAACT
CGGTAATTCAGGGCCTTGTCTTCTCAAGCTCAGGACTTCTGCTGCTTCAC
GGGTTTTCAAGCGCTGTTTCGCGGCGGCAATCAAAGTTCGAGCTGCTGCT
TCGGGTGCCCTCGTCGAAGTCGAGCCAACCGTACGTTGCATTTAGCTTAT
TTTCTTGCTTTAATTCATCAATTCAATTCATCGATTCAGTTCATGGAATA
GAAGATTGAAAACCCAATTGTAGTTTTGTCTGTTTGGTTGCCGAGAAACG
GTAGGGAAAAGGAAAAGTTCAGAGCTTTTATTTTCCTAGTACTATATTGC
CTTCAGTAAGAGTTAAAATCTTTTGGACAACCTTAATCTTGATTGAGCTA
ATGTTTATTTTTGAGATTAAGGTTTGAAATTGTTTGCTTCATAAACAATA
GGAACCAATTGTGGTGCAAAATGATGGCATCAGCAGCAACAACATTTTAG
CTTGTCCGATATGCTACGATCCACTTTCAAGTTCCGGTGATCCGGGCTTA
TCTGTGTAAGCTATATTTAGGATTACCTTGAGGTTGCATTGTATAATTTT
GATTCGCTTTTCGTTAWTTTTGTTTTCGTTGATTATGGGAGTGGCATGCT
TTTGCAGTGAGTCTGCTTCTGGGTCTAGTTTTCAATGTGGCACTTGTAAG
AAGACATACTTTGGCAACGAAACACATATTGACCTGACAACAGCAAGCGG
CACCAAGGACTATGGTGAATCAATGCCCGTTACCACAGAAATATTTAGGT
ATTGGAATTGTATTTAGCTTTAATTGTACAACCCATATGTGGTAATCATA
TGGTTTTGAAATGAATTTTAAATGGGGATGGTGAATAAACATGGCCGAAG
TAGAGTCAGACGTGAATCCTCTTAGTTTCTCCATCTCTCTGAATGTATCT
CGCATAGGAATAACAAAAATAGGCTCTAGTTATGGGCTTATGGTGCAGAA
TAACATCTGATGTTTAGTATATTGATCTTTTACATATGTTTGGAGATTAT
GTATCTTCTTTGACTCTTATTATGTGAATGAGATTCTTTCTGTTCTCATA
GGCGGTTGCGGTGAACATTATTACTTTATCCTCTGTGGCATAGATGGGGC
ATGAACCTAGTTGAACTGATTGCATCTACCACATTACAATTTTCAAAGCA
TTACCAATAGTACTTCCTAATACCTCATGAATATGTTGATATGCATCTTT
GTATAGCGTCTAGTGACTTTTTGTTGCATCAGGACTCCATTGGTATCGTA
CCTCTATGAGAGGGGCTGGCGTCAAAGCTTTACTGTATGGGGTGGATTTC
CTGGCCCAGAGAAAGAGGTAAGATGATCAGTTACTTTATTTCAGATTTTA
TCATCGCAATGGCTTATCAAACGTCCTTTCTAAATTTCAAAAGATGGTAT
TTGATAGGTTGTGTTGTAACTCATACTGTCATACAACCTTTAGAAAGTTG
CGAAGTGTGCCAACGGACAATATTTCATATAATATTGGGGTTTTGGACAG
GGAACGACATAGTCCATTTTGTTTGGTTACATATGAATTATGAAGTGAAA
TTTTCTAGTAAAGTATTTTATTTTGGGCCTAAGTTAGTATAGTATTTACT
TAAACTAAGAAGCTCCACCGCCAATGAAAAACAGATAGAATCATTGTGTT
GAACTAAGTGCTCTATTCTGATCACGGCATTGAAAACAGATAGAACCATT
GTGTTGCTGCCAAATATGCAATGTAGTTGTCTGAACAACTGAAAAAACAG
TCATGTTTTACCAGTGTGCACTCAATTTGTCTTGCCAAAGGAGGTTCTTG
AGTTGCTAACCGCAGCATAGTTTTGACTGCAGTTTGAGTTGACTAAGGAT
TTCTTAAAGCCAGTCTTGGGTGGTGGAAATATCATTGATGCAAGTTGTGG
GAGTGGGATGTTTTCTAGACTTTTCGCTAAGAGTGGATTGTTTTCTCTTG
TTGTTGCTTTGGACTACTCAGAGAACATGTTGAAGGAGTGCTATGGATTC
ATTCAGCAGGAGGAGAACTTCCCCAAAGAGTACAGAACTTTGAATTTTTC
ATTCAAATTTAGATGATAAATCTGAAAGTTTAATATACTTTCCATTATTT
GCCTGATTTAAGTTTTTTTAWTTTWTTAKKWACATGATCCTGGTCAGAGC
TGATATTTCTCGGCTTCCCTTTGCTACTGGTTCTGTGGATGCAGTGCATG
CTGGTGCTGCCATACATTGTTGGCCTTCACCATCAACAGCTGTAAGTAGT
TATATATACGGTGTTAGAGCTAACTGTGCTGTTTGCTTTGACTACCTGTA
AGGCTTAAATCTTAACGTATTAGCAGTGGTGAAAAGTCCTTGATGCTAAT
AAATTTGTCTCCTAATAAGTTAATGAAACATTTTGCATTATGAGCACATT
TTAACAACATACCTTTAAGATTTCTTAAAGAAAAATAAGAAATAGCTAAC
CTTGCCTTGGGAACAAAAACATAGTATTTGACTATTTGTTGCGTGTTTTA
ATTTTTCTGATACCCTGGTACAGAAATTTGTTAGTAATTTCATATTCCTC
TGTTCCTCGCTGATTTAGTAGTTATCTCCAAATCGGCATGGATTGATTAT
AAATGTGCTTATATTGGTGCAGATGTAATATTATCTGGTAGAACCAAATG
TGTTTTCTCCCCAGTTTTCCGATTTTAGTTTAACCTGGTAGTTTCTCCTG
AGTAATTACTGTGGTTTTGAAGGTTGCTGAAATTAGTCGAGTCCTGCGAC
CTGGGGGGGTGTTTGTTGCATCTACTTACATACTCGATGGGCCTTTTTCG
CTCATCCCATTTCTAAGGAACATAACACAGGTACATCTTTTCCACTCCAA
CGTTTCATTGTTGCAGCTTTGGGATTCCGCTGAATGTGCGTTATGTAGTG
AATGGTTTGGGACTACGACTTTTTATCTCAATCTCACTGGGGGTTGATTT
TATGTCTTCTGTTTCGTAGAGAACAAAGCAAATATCGGGCGGCCAAGTCT
TCACATCAGAAAGTGAATTAGAAGACATCTGTCAAGCTTGTGGACTAGTA
GKTTTTACAAAAGTGAGGAATAGGCTTTTTGTGATGATTTCTGCCACAAA
ACCAACTTAA
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protein sequence of MDP0000208635

>MDP0000208635 ID=MDP0000208635; Name=MDP0000208635; organism=Malus x domestica; type=polypeptide; length=352bp
METVVGNLCSPFLLSQLGNSGPCLLKLRTSAASRVFKRCFAAAIKVRAAA
SGALVEVEPTEPIVVQNDGISSNNILACPICYDPLSSSGDPGLSVESASG
SSFQCGTCKKTYFGNETHIDLTTASGTKDYGESMPVTTEIFRTPLVSYLY
ERGWRQSFTVWGGFPGPEKEFELTKDFLKPVLGGGNIIDASCGSGMFSRL
FAKSGLFSLVVALDYSENMLKECYGFIQQEENFPKDACWCCHTLLAFTIN
SLVISKSAWIDYKCAYIGADVAEISRVLRPGGVFVASTYILDGPFSLIPF
LRNITQRTKQISGGQVFTSESELEDICQACGLVXFTKVRNRLFVMISATK
PT
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mRNA from alignment at chr13:22614931..22618090+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000208635 ID=MDP0000208635; Name=MDP0000208635; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:22614931..22618090+ (Malus x domestica
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mRNA from alignment at MDC019062.262:11088..14247+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000208635 ID=MDP0000208635; Name=MDP0000208635; organism=Malus x domestica; type=mRNA; length=3160bp; location=Sequence derived from: MDC019062.262:11088..14247+ (Malus x domestica
ATGGAGACGGTGGTCGGCAACCTCTGCTCCCCGTTTCTTCTGAGTCAACT
CGGTAATTCAGGGCCTTGTCTTCTCAAGCTCAGGACTTCTGCTGCTTCAC
GGGTTTTCAAGCGCTGTTTCGCGGCGGCAATCAAAGTTCGAGCTGCTGCT
TCGGGTGCCCTCGTCGAAGTCGAGCCAACCGTACGTTGCATTTAGCTTAT
TTTCTTGCTTTAATTCATCAATTCAATTCATCGATTCAGTTCATGGAATA
GAAGATTGAAAACCCAATTGTAGTTTTGTCTGTTTGGTTGCCGAGAAACG
GTAGGGAAAAGGAAAAGTTCAGAGCTTTTATTTTCCTAGTACTATATTGC
CTTCAGTAAGAGTTAAAATCTTTTGGACAACCTTAATCTTGATTGAGCTA
ATGTTTATTTTTGAGATTAAGGTTTGAAATTGTTTGCTTCATAAACAATA
GGAACCAATTGTGGTGCAAAATGATGGCATCAGCAGCAACAACATTTTAG
CTTGTCCGATATGCTACGATCCACTTTCAAGTTCCGGTGATCCGGGCTTA
TCTGTGTAAGCTATATTTAGGATTACCTTGAGGTTGCATTGTATAATTTT
GATTCGCTTTTCGTTAWTTTTGTTTTCGTTGATTATGGGAGTGGCATGCT
TTTGCAGTGAGTCTGCTTCTGGGTCTAGTTTTCAATGTGGCACTTGTAAG
AAGACATACTTTGGCAACGAAACACATATTGACCTGACAACAGCAAGCGG
CACCAAGGACTATGGTGAATCAATGCCCGTTACCACAGAAATATTTAGGT
ATTGGAATTGTATTTAGCTTTAATTGTACAACCCATATGTGGTAATCATA
TGGTTTTGAAATGAATTTTAAATGGGGATGGTGAATAAACATGGCCGAAG
TAGAGTCAGACGTGAATCCTCTTAGTTTCTCCATCTCTCTGAATGTATCT
CGCATAGGAATAACAAAAATAGGCTCTAGTTATGGGCTTATGGTGCAGAA
TAACATCTGATGTTTAGTATATTGATCTTTTACATATGTTTGGAGATTAT
GTATCTTCTTTGACTCTTATTATGTGAATGAGATTCTTTCTGTTCTCATA
GGCGGTTGCGGTGAACATTATTACTTTATCCTCTGTGGCATAGATGGGGC
ATGAACCTAGTTGAACTGATTGCATCTACCACATTACAATTTTCAAAGCA
TTACCAATAGTACTTCCTAATACCTCATGAATATGTTGATATGCATCTTT
GTATAGCGTCTAGTGACTTTTTGTTGCATCAGGACTCCATTGGTATCGTA
CCTCTATGAGAGGGGCTGGCGTCAAAGCTTTACTGTATGGGGTGGATTTC
CTGGCCCAGAGAAAGAGGTAAGATGATCAGTTACTTTATTTCAGATTTTA
TCATCGCAATGGCTTATCAAACGTCCTTTCTAAATTTCAAAAGATGGTAT
TTGATAGGTTGTGTTGTAACTCATACTGTCATACAACCTTTAGAAAGTTG
CGAAGTGTGCCAACGGACAATATTTCATATAATATTGGGGTTTTGGACAG
GGAACGACATAGTCCATTTTGTTTGGTTACATATGAATTATGAAGTGAAA
TTTTCTAGTAAAGTATTTTATTTTGGGCCTAAGTTAGTATAGTATTTACT
TAAACTAAGAAGCTCCACCGCCAATGAAAAACAGATAGAATCATTGTGTT
GAACTAAGTGCTCTATTCTGATCACGGCATTGAAAACAGATAGAACCATT
GTGTTGCTGCCAAATATGCAATGTAGTTGTCTGAACAACTGAAAAAACAG
TCATGTTTTACCAGTGTGCACTCAATTTGTCTTGCCAAAGGAGGTTCTTG
AGTTGCTAACCGCAGCATAGTTTTGACTGCAGTTTGAGTTGACTAAGGAT
TTCTTAAAGCCAGTCTTGGGTGGTGGAAATATCATTGATGCAAGTTGTGG
GAGTGGGATGTTTTCTAGACTTTTCGCTAAGAGTGGATTGTTTTCTCTTG
TTGTTGCTTTGGACTACTCAGAGAACATGTTGAAGGAGTGCTATGGATTC
ATTCAGCAGGAGGAGAACTTCCCCAAAGAGTACAGAACTTTGAATTTTTC
ATTCAAATTTAGATGATAAATCTGAAAGTTTAATATACTTTCCATTATTT
GCCTGATTTAAGTTTTTTTAWTTTWTTAKKWACATGATCCTGGTCAGAGC
TGATATTTCTCGGCTTCCCTTTGCTACTGGTTCTGTGGATGCAGTGCATG
CTGGTGCTGCCATACATTGTTGGCCTTCACCATCAACAGCTGTAAGTAGT
TATATATACGGTGTTAGAGCTAACTGTGCTGTTTGCTTTGACTACCTGTA
AGGCTTAAATCTTAACGTATTAGCAGTGGTGAAAAGTCCTTGATGCTAAT
AAATTTGTCTCCTAATAAGTTAATGAAACATTTTGCATTATGAGCACATT
TTAACAACATACCTTTAAGATTTCTTAAAGAAAAATAAGAAATAGCTAAC
CTTGCCTTGGGAACAAAAACATAGTATTTGACTATTTGTTGCGTGTTTTA
ATTTTTCTGATACCCTGGTACAGAAATTTGTTAGTAATTTCATATTCCTC
TGTTCCTCGCTGATTTAGTAGTTATCTCCAAATCGGCATGGATTGATTAT
AAATGTGCTTATATTGGTGCAGATGTAATATTATCTGGTAGAACCAAATG
TGTTTTCTCCCCAGTTTTCCGATTTTAGTTTAACCTGGTAGTTTCTCCTG
AGTAATTACTGTGGTTTTGAAGGTTGCTGAAATTAGTCGAGTCCTGCGAC
CTGGGGGGGTGTTTGTTGCATCTACTTACATACTCGATGGGCCTTTTTCG
CTCATCCCATTTCTAAGGAACATAACACAGGTACATCTTTTCCACTCCAA
CGTTTCATTGTTGCAGCTTTGGGATTCCGCTGAATGTGCGTTATGTAGTG
AATGGTTTGGGACTACGACTTTTTATCTCAATCTCACTGGGGGTTGATTT
TATGTCTTCTGTTTCGTAGAGAACAAAGCAAATATCGGGCGGCCAAGTCT
TCACATCAGAAAGTGAATTAGAAGACATCTGTCAAGCTTGTGGACTAGTA
GKTTTTACAAAAGTGAGGAATAGGCTTTTTGTGATGATTTCTGCCACAAA
ACCAACTTAA
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Coding sequence (CDS) from alignment at MDC019062.262:11088..14247+

>MDP0000208635 ID=MDP0000208635; Name=MDP0000208635; organism=Malus x domestica; type=CDS; length=1059bp; location=Sequence derived from: MDC019062.262:11088..14247+ (Malus x domestica
ATGGAGACGGTGGTCGGCAACCTCTGCTCCCCGTTTCTTCTGAGTCAACT
CGGTAATTCAGGGCCTTGTCTTCTCAAGCTCAGGACTTCTGCTGCTTCAC
GGGTTTTCAAGCGCTGTTTCGCGGCGGCAATCAAAGTTCGAGCTGCTGCT
TCGGGTGCCCTCGTCGAAGTCGAGCCAACCGAACCAATTGTGGTGCAAAA
TGATGGCATCAGCAGCAACAACATTTTAGCTTGTCCGATATGCTACGATC
CACTTTCAAGTTCCGGTGATCCGGGCTTATCTGTTGAGTCTGCTTCTGGG
TCTAGTTTTCAATGTGGCACTTGTAAGAAGACATACTTTGGCAACGAAAC
ACATATTGACCTGACAACAGCAAGCGGCACCAAGGACTATGGTGAATCAA
TGCCCGTTACCACAGAAATATTTAGGACTCCATTGGTATCGTACCTCTAT
GAGAGGGGCTGGCGTCAAAGCTTTACTGTATGGGGTGGATTTCCTGGCCC
AGAGAAAGAGTTTGAGTTGACTAAGGATTTCTTAAAGCCAGTCTTGGGTG
GTGGAAATATCATTGATGCAAGTTGTGGGAGTGGGATGTTTTCTAGACTT
TTCGCTAAGAGTGGATTGTTTTCTCTTGTTGTTGCTTTGGACTACTCAGA
GAACATGTTGAAGGAGTGCTATGGATTCATTCAGCAGGAGGAGAACTTCC
CCAAAGATGCATGCTGGTGCTGCCATACATTGTTGGCCTTCACCATCAAC
AGCTTAGTTATCTCCAAATCGGCATGGATTGATTATAAATGTGCTTATAT
TGGTGCAGATGTTGCTGAAATTAGTCGAGTCCTGCGACCTGGGGGGGTGT
TTGTTGCATCTACTTACATACTCGATGGGCCTTTTTCGCTCATCCCATTT
CTAAGGAACATAACACAGAGAACAAAGCAAATATCGGGCGGCCAAGTCTT
CACATCAGAAAGTGAATTAGAAGACATCTGTCAAGCTTGTGGACTAGTAG
KTTTTACAAAAGTGAGGAATAGGCTTTTTGTGATGATTTCTGCCACAAAA
CCAACTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013216Methyltransf_11
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity