MDP0000220512, MDP0000220512 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000220512
Unique Name	MDP0000220512
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	964

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr6	chromosome	chr6:22914206..22915169 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC020336.137	contig	MDC020336.137:13..976 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs NCBI nr	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs Vitis vinifera	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs UniProt Swiss-Prot	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs UniProt TrEMBL	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs TAIR 10	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs Populus trichocarpa v2.0	2012-07-23
BLASTx of Malus x domestica v1.0 mRNA vs Prunus persica v1.0	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000220512_exon_1	MDP0000220512_exon_1	Malus x domestica	CDS
MDP0000220512_exon_2	MDP0000220512_exon_2	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000220512	MDP0000220512	Malus x domestica	polypeptide

Homology

[Close]

BLAST of MDP0000220512 vs. NCBI nr
Match: gi|357495795|ref|XP_003618186.1| (DEAD-box ATP-dependent RNA helicase [Medicago truncatula] >gi|355493201|gb|AES74404.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula])

HSP 1 Score: 101.293 bits (251), Expect = 1.129e-19
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 1

Query:  400 DPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGG 636
            DPTLPKPW+ LVDGKTG LYFWNPET VTQY+RP+ S AP K  S    S SV + QSSQG+ R  + +DRY R  NGG
Sbjct:   17 DPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPLKTSSVP--SSSVQVQQSSQGRGRSPDFSDRYDRNGNGG 93

[Close]

BLAST of MDP0000220512 vs. NCBI nr
Match: gi|357495793|ref|XP_003618185.1| (DEAD-box ATP-dependent RNA helicase [Medicago truncatula] >gi|355493200|gb|AES74403.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula])

HSP 1 Score: 101.293 bits (251), Expect = 1.129e-19
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 1

Query:  400 DPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGG 636
            DPTLPKPW+ LVDGKTG LYFWNPET VTQY+RP+ S AP K  S    S SV + QSSQG+ R  + +DRY R  NGG
Sbjct:   17 DPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPLKTSSVP--SSSVQVQQSSQGRGRSPDFSDRYDRNGNGG 93

[Close]

BLAST of MDP0000220512 vs. NCBI nr
Match: gi|255560866|ref|XP_002521446.1| (dead box ATP-dependent RNA helicase, putative [Ricinus communis] >gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis])

HSP 1 Score: 98.2117 bits (243), Expect = 9.558e-19
Identity = 50/80 (62.50%), Postives = 55/80 (68.75%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGG 636
            EDPTLPKPWR LVDGKTG LYFWNPET VTQY+RP  +  PSK  S   IS SV + QSS+    P +  DRYGRG   G
Sbjct:   14 EDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPIATALPSKS-SLVPISSSVQVQQSSRRGYSPVKEEDRYGRGNGSG 92

[Close]

BLAST of MDP0000220512 vs. NCBI nr
Match: gi|224060117|ref|XP_002300045.1| (predicted protein [Populus trichocarpa] >gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa])

HSP 1 Score: 92.8189 bits (229), Expect = 4.016e-17
Identity = 49/81 (60.49%), Postives = 55/81 (67.90%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPD-EGNDRYGRGINGG 636
            EDPTLPKPWR LVDGKTG LYFWNPET VTQY+RPT      K  S+  I+ SV +HQSS     P  + +DRYGR  N G
Sbjct:   17 EDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPT----LPKSVSSLPITSSVQVHQSSHRGYNPSVKEDDRYGRANNAG 93

[Close]

BLAST of MDP0000220512 vs. NCBI nr
Match: gi|359488684|ref|XP_003633801.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 2 [Vitis vinifera])

HSP 1 Score: 91.6633 bits (226), Expect = 8.946e-17
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRP-------TGSVAPSKXYSAQFISFSVHIHQSSQGQCRP---DEGNDRYGRGIN 630
            EDPTLPKPW+ LVDGKTG LYFWNPET VTQY+RP         S+AP    SA  IS SV + QSSQGQ R    +E +D+Y R  N
Sbjct:   13 EDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPPPKSSAS-ISSSVQVQQSSQGQRRDHGLNEEDDKYNRARN 99

[Close]

BLAST of MDP0000220512 vs. NCBI nr
Match: gi|359488682|ref|XP_002273908.2| (PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 1 [Vitis vinifera])

HSP 1 Score: 91.6633 bits (226), Expect = 8.946e-17
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRP-------TGSVAPSKXYSAQFISFSVHIHQSSQGQCRP---DEGNDRYGRGIN 630
            EDPTLPKPW+ LVDGKTG LYFWNPET VTQY+RP         S+AP    SA  IS SV + QSSQGQ R    +E +D+Y R  N
Sbjct:   13 EDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPPPKSSAS-ISSSVQVQQSSQGQRRDHGLNEEDDKYNRARN 99

[Close]

BLAST of MDP0000220512 vs. NCBI nr
Match: gi|356573317|ref|XP_003554808.1| (PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 46-like [Glycine max])

HSP 1 Score: 91.6633 bits (226), Expect = 8.946e-17
Identity = 48/81 (59.26%), Postives = 56/81 (69.14%), Query Frame = 1

Query:  400 DPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQG--QCRPDEGNDRYGRGINGG 636
            DPTLPKPWR LVDGKTG LYFWNPET VTQY+RP+ S A    +S+   S SV + QSSQG  + R  + +DRY R   GG
Sbjct:   18 DPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSSASQSKFSS-VPSSSVQVQQSSQGSQRGRSPDFSDRYDRNGTGG 97

[Close]

BLAST of MDP0000220512 vs. NCBI nr
Match: gi|296087641|emb|CBI34897.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 91.6633 bits (226), Expect = 8.946e-17
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRP-------TGSVAPSKXYSAQFISFSVHIHQSSQGQCRP---DEGNDRYGRGIN 630
            EDPTLPKPW+ LVDGKTG LYFWNPET VTQY+RP         S+AP    SA  IS SV + QSSQGQ R    +E +D+Y R  N
Sbjct:   13 EDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPPPKSSAS-ISSSVQVQQSSQGQRRDHGLNEEDDKYNRARN 99

[Close]

BLAST of MDP0000220512 vs. NCBI nr
Match: gi|224141279|ref|XP_002324002.1| (predicted protein [Populus trichocarpa] >gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa])

HSP 1 Score: 91.6633 bits (226), Expect = 8.946e-17
Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGIN 630
            +DPTLPKPWR LVDGKTG LYFWNPET VTQY+RP+ S  P K  S+  I+ SV + QSS    R    +DRYGR  N
Sbjct:   17 DDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSTSAIPPKSSSSVPITPSVQVEQSSSH--RGYSPDDRYGRAHN 92

[Close]

BLAST of MDP0000220512 vs. NCBI nr
Match: gi|356511678|ref|XP_003524550.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Glycine max])

HSP 1 Score: 89.3521 bits (220), Expect = 4.440e-16
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 1

Query:  400 DPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQG-QC-RPDEGNDRYGRGINGG 636
            DPTLPKPWR LVDGKTG LYFWNPET VTQY+RP+ S + ++  S+   + SV + QSSQG QC    + +DRY R  +GG
Sbjct:   18 DPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSS-STAQPKSSSVPNSSVQVQQSSQGSQCGHSPDFSDRYDRNGSGG 97

[Close]

BLAST of MDP0000220512 vs. Vitis vinifera
Match: GSVIVT01032443001 (assembled CDS)

HSP 1 Score: 91.6633 bits (226), Expect = 2.566e-19
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRP-------TGSVAPSKXYSAQFISFSVHIHQSSQGQCRP---DEGNDRYGRGIN 630
            EDPTLPKPW+ LVDGKTG LYFWNPET VTQY+RP         S+AP    SA  IS SV + QSSQGQ R    +E +D+Y R  N
Sbjct:   13 EDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPPPKSSAS-ISSSVQVQQSSQGQRRDHGLNEEDDKYNRARN 99

[Close]

BLAST of MDP0000220512 vs. Vitis vinifera
Match: GSVIVT01017652001 (assembled CDS)

HSP 1 Score: 68.5514 bits (166), Expect = 2.326e-12
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAP 519
            +DPTLPKPW+ L+DG TG LY+WNPET +TQY++PT    P
Sbjct:   18 DDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALPPP 58

[Close]

BLAST of MDP0000220512 vs. Vitis vinifera
Match: GSVIVT01015465001 (assembled CDS)

HSP 1 Score: 62.3882 bits (150), Expect = 1.667e-10
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1

Query:    1 MVNSPSDLPQLASDAIFCNPSDIATWVDSLLSEFNHQPLMSLPS 132
            MVN+PS++ QLASD + CNPSDIA+WVDS+L EFN  P +S+PS
Sbjct:  446 MVNAPSEISQLASDVLHCNPSDIASWVDSMLFEFN--PPVSIPS 487

[Close]

BLAST of MDP0000220512 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.688e-16
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGGPS 642
            EDP LPKPW+ LVD +TG LYFWNPET VTQY+RP  S  P    +A  +S SV  +Q S       + +D+YGRG +G  S
Sbjct:   13 EDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPK--LAAIPVSSSVQTNQQSSSGFNSGKEDDKYGRGSDGPKS 92

[Close]

BLAST of MDP0000220512 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.926e-14
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRG 624
            ED TLPKPW+ L+D +TG LYFWNPET VTQY++PT S+ P K   A  +S SV + Q+      P + +D+Y RG
Sbjct:   15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSL-PPKFSPAVSVSSSVQVQQTD--AYAPPKDDDKYSRG 87

[Close]

BLAST of MDP0000220512 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.197e-13
Identity = 42/81 (51.85%), Postives = 51/81 (62.96%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGS---VAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGIN 630
            EDPTLPKPW+ LVDG TG +YFWNPET  TQY+RP  S   V+     S+ F+S SV   + SQGQ    +G   + RG N
Sbjct:   16 EDPTLPKPWKGLVDGTTGFIYFWNPETNDTQYERPVPSSHAVSAPAHKSSVFVSSSV--EKPSQGQRYDADGG--HNRGSN 92

[Close]

BLAST of MDP0000220512 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.246e-12
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1

Query:  400 DPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPT 504
            DPTLPKPWR L+DG TG LYFWNPETK  QYDRPT
Sbjct:   20 DPTLPKPWRGLIDGNTGYLYFWNPETKAVQYDRPT 54

[Close]

BLAST of MDP0000220512 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.800e-11
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPT 504
            EDPTLP+PW+ L+DG TG LY+WNPET VTQY+RP+
Sbjct:   18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPS 53

[Close]

BLAST of MDP0000220512 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 2.204e-10
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRP 501
            +DP+LPKPWR LVDG TG LY+WNPET +TQY++P
Sbjct:   15 DDPSLPKPWRGLVDGTTGYLYYWNPETNITQYEKP 49

[Close]

BLAST of MDP0000220512 vs. ExPASy TrEMBL
Match: G7KHJ2_MEDTR (DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_6g005550 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.222e-19
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 1

Query:  400 DPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGG 636
            DPTLPKPW+ LVDGKTG LYFWNPET VTQY+RP+ S AP K  S    S SV + QSSQG+ R  + +DRY R  NGG
Sbjct:   17 DPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPLKTSSVP--SSSVQVQQSSQGRGRSPDFSDRYDRNGNGG 93

[Close]

BLAST of MDP0000220512 vs. ExPASy TrEMBL
Match: G7KHJ1_MEDTR (DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_6g005550 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.222e-19
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 1

Query:  400 DPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGG 636
            DPTLPKPW+ LVDGKTG LYFWNPET VTQY+RP+ S AP K  S    S SV + QSSQG+ R  + +DRY R  NGG
Sbjct:   17 DPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPLKTSSVP--SSSVQVQQSSQGRGRSPDFSDRYDRNGNGG 93

[Close]

BLAST of MDP0000220512 vs. ExPASy TrEMBL
Match: B9S627_RICCO (Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1063350 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.035e-18
Identity = 50/80 (62.50%), Postives = 55/80 (68.75%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGG 636
            EDPTLPKPWR LVDGKTG LYFWNPET VTQY+RP  +  PSK  S   IS SV + QSS+    P +  DRYGRG   G
Sbjct:   14 EDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPIATALPSKS-SLVPISSSVQVQQSSRRGYSPVKEEDRYGRGNGSG 92

[Close]

BLAST of MDP0000220512 vs. ExPASy TrEMBL
Match: B9GI44_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1068852 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.347e-17
Identity = 49/81 (60.49%), Postives = 55/81 (67.90%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPD-EGNDRYGRGINGG 636
            EDPTLPKPWR LVDGKTG LYFWNPET VTQY+RPT      K  S+  I+ SV +HQSS     P  + +DRYGR  N G
Sbjct:   17 EDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPT----LPKSVSSLPITSSVQVHQSSHRGYNPSVKEDDRYGRANNAG 93

[Close]

BLAST of MDP0000220512 vs. ExPASy TrEMBL
Match: F6HUY4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01020 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.683e-17
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRP-------TGSVAPSKXYSAQFISFSVHIHQSSQGQCRP---DEGNDRYGRGIN 630
            EDPTLPKPW+ LVDGKTG LYFWNPET VTQY+RP         S+AP    SA  IS SV + QSSQGQ R    +E +D+Y R  N
Sbjct:   13 EDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPPPKSSAS-ISSSVQVQQSSQGQRRDHGLNEEDDKYNRARN 99

[Close]

BLAST of MDP0000220512 vs. ExPASy TrEMBL
Match: B9IJL9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1105042 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.683e-17
Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGIN 630
            +DPTLPKPWR LVDGKTG LYFWNPET VTQY+RP+ S  P K  S+  I+ SV + QSS    R    +DRYGR  N
Sbjct:   17 DDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSTSAIPPKSSSSVPITPSVQVEQSSSH--RGYSPDDRYGRAHN 92

[Close]

BLAST of MDP0000220512 vs. ExPASy TrEMBL
Match: I1K1I4_SOYBN (Uncharacterized protein OS=Glycine max GN=Gma.37242 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.806e-16
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 1

Query:  400 DPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQG-QC-RPDEGNDRYGRGINGG 636
            DPTLPKPWR LVDGKTG LYFWNPET VTQY+RP+ S + ++  S+   + SV + QSSQG QC    + +DRY R  +GG
Sbjct:   18 DPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSS-STAQPKSSSVPNSSVQVQQSSQGSQCGHSPDFSDRYDRNGSGG 97

[Close]

BLAST of MDP0000220512 vs. ExPASy TrEMBL
Match: Q9SP26_PEA (P72 DEAD box protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.197e-16
Identity = 44/74 (59.46%), Postives = 51/74 (68.92%), Query Frame = 1

Query:  415 KPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGG 636
            KPW+ LVDGKTG LYFWNPET VTQY+RP  S AP K  +    S SV + QSSQG+ R  + +DRY R  NGG
Sbjct:   10 KPWKGLVDGKTGYLYFWNPETNVTQYERPLSSAAPPKPSAVP--SSSVQVQQSSQGRGRSPDFSDRYDRNGNGG 81

[Close]

BLAST of MDP0000220512 vs. ExPASy TrEMBL
Match: F4K6V1_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=At5g14610 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 6.940e-15
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGGPS 642
            EDP LPKPW+ LVD +TG LYFWNPET VTQY+RP  S  P    +A  +S SV  +Q S       + +D+YGRG +G  S
Sbjct:   13 EDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPK--LAAIPVSSSVQTNQQSSSGFNSGKEDDKYGRGSDGPKS 92

[Close]

BLAST of MDP0000220512 vs. ExPASy TrEMBL
Match: Q0HA68_MALDO (DELLA protein OS=Malus domestica GN=L3b PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.184e-14
Identity = 53/121 (43.80%), Postives = 65/121 (53.72%), Query Frame = 1

Query:    1 MVNSPSDLPQLASDAIFCNPSDIATWVDSLLSEFNHQPLMSLPSGPESKATACEELNKVIDFXXXXXXXXXXXXXXQKLLDMAGDISFIQGVPPSDPIRVFFVPSALQDDAVRVVHSSHNC 363
            MVNSPSDL QLASDA+  NPSDIATWVDSLLSEFNHQPLMSLPS               +DF              +   D   + SF+  VP  +  ++  V +  +D  +R+VH    C
Sbjct:   61 MVNSPSDLSQLASDAVLYNPSDIATWVDSLLSEFNHQPLMSLPSD--------------LDFPDSAVINNPAALSGETWTD---NSSFVSAVPQQNH-QLTVVTAMEEDSGIRLVHLLVTC 163

[Close]

BLAST of MDP0000220512 vs. TAIR10
Match: AT5G14610.2 (| Symbols: | DEAD box RNA helicase family protein | chr5:4711271-4714713 FORWARD LENGTH=645)

HSP 1 Score: 85.5001 bits (210), Expect = 2.679e-17
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGGPS 642
            EDP LPKPW+ LVD +TG LYFWNPET VTQY+RP  S  P    +A  +S SV  +Q S       + +D+YGRG +G  S
Sbjct:   13 EDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPK--LAAIPVSSSVQTNQQSSSGFNSGKEDDKYGRGSDGPKS 92

[Close]

BLAST of MDP0000220512 vs. TAIR10
Match: AT5G14610.1 (| Symbols: | DEAD box RNA helicase family protein | chr5:4711271-4714713 FORWARD LENGTH=712)

HSP 1 Score: 85.5001 bits (210), Expect = 2.679e-17
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGGPS 642
            EDP LPKPW+ LVD +TG LYFWNPET VTQY+RP  S  P    +A  +S SV  +Q S       + +D+YGRG +G  S
Sbjct:   13 EDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPK--LAAIPVSSSVQTNQQSSSGFNSGKEDDKYGRGSDGPKS 92

[Close]

BLAST of MDP0000220512 vs. TAIR10
Match: AT3G01540.4 (| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=619)

HSP 1 Score: 79.337 bits (194), Expect = 1.920e-15
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRG 624
            ED TLPKPW+ L+D +TG LYFWNPET VTQY++PT S+ P K   A  +S SV + Q+      P + +D+Y RG
Sbjct:   15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSL-PPKFSPAVSVSSSVQVQQTD--AYAPPKDDDKYSRG 87

[Close]

BLAST of MDP0000220512 vs. TAIR10
Match: AT3G01540.3 (| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=619)

HSP 1 Score: 79.337 bits (194), Expect = 1.920e-15
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRG 624
            ED TLPKPW+ L+D +TG LYFWNPET VTQY++PT S+ P K   A  +S SV + Q+      P + +D+Y RG
Sbjct:   15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSL-PPKFSPAVSVSSSVQVQQTD--AYAPPKDDDKYSRG 87

[Close]

BLAST of MDP0000220512 vs. TAIR10
Match: AT3G01540.1 (| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=618)

HSP 1 Score: 79.337 bits (194), Expect = 1.920e-15
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRG 624
            ED TLPKPW+ L+D +TG LYFWNPET VTQY++PT S+ P K   A  +S SV + Q+      P + +D+Y RG
Sbjct:   15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSL-PPKFSPAVSVSSSVQVQQTD--AYAPPKDDDKYSRG 87

[Close]

BLAST of MDP0000220512 vs. TAIR10
Match: AT3G01540.2 (| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=619)

HSP 1 Score: 79.337 bits (194), Expect = 1.920e-15
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRG 624
            ED TLPKPW+ L+D +TG LYFWNPET VTQY++PT S+ P K   A  +S SV + Q+      P + +D+Y RG
Sbjct:   15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSL-PPKFSPAVSVSSSVQVQQTD--AYAPPKDDDKYSRG 87

[Close]

BLAST of MDP0000220512 vs. TAIR10
Match: AT3G06480.1 (| Symbols: | DEAD box RNA helicase family protein | chr3:1985697-1989666 REVERSE LENGTH=1088)

HSP 1 Score: 67.781 bits (164), Expect = 5.781e-12
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPT 504
            EDPTLP+PW+ L+DG TG LY+WNPET VTQY+RP+
Sbjct:   18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPS 53

[Close]

BLAST of MDP0000220512 vs. Populus trichicarpa v2.0
Match: POPTR_0001s35150.1 ()

HSP 1 Score: 92.8189 bits (229), Expect = 1.906e-19
Identity = 49/81 (60.49%), Postives = 55/81 (67.90%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPD-EGNDRYGRGINGG 636
            EDPTLPKPWR LVDGKTG LYFWNPET VTQY+RPT      K  S+  I+ SV +HQSS     P  + +DRYGR  N G
Sbjct:   17 EDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPT----LPKSVSSLPITSSVQVHQSSHRGYNPSVKEDDRYGRANNAG 93

[Close]

BLAST of MDP0000220512 vs. Populus trichicarpa v2.0
Match: POPTR_0017s10760.1 ()

HSP 1 Score: 91.6633 bits (226), Expect = 4.246e-19
Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGIN 630
            +DPTLPKPWR LVDGKTG LYFWNPET VTQY+RP+ S  P K  S+  I+ SV + QSS    R    +DRYGR  N
Sbjct:   17 DDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSTSAIPPKSSSSVPITPSVQVEQSSSH--RGYSPDDRYGRAHN 92

[Close]

BLAST of MDP0000220512 vs. Populus trichicarpa v2.0
Match: POPTR_0010s16220.1 ()

HSP 1 Score: 66.2402 bits (160), Expect = 1.910e-11
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAP 519
            EDPTLPKPW  L+DG TG LY+WNPET +TQY++P  SV P
Sbjct:   18 EDPTLPKPWTGLIDGSTGLLYYWNPETNITQYEKPP-SVPP 57

[Close]

BLAST of MDP0000220512 vs. GDR
Match: ppa002318m ()

HSP 1 Score: 133.265 bits (334), Expect = 8.997e-32
Identity = 64/80 (80.00%), Postives = 67/80 (83.75%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGG 636
            EDPTLPKPWR LVDGKTG LYFWNPET VTQYDRPTGS  P K  SAQ IS SVH+ QSSQG+ RPDEG+DRYGRG NGG
Sbjct:   16 EDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYDRPTGSAPPLKPSSAQSISSSVHVQQSSQGR-RPDEGDDRYGRGSNGG 94

[Close]

BLAST of MDP0000220512 vs. GDR
Match: ppa002303m ()

HSP 1 Score: 133.265 bits (334), Expect = 8.997e-32
Identity = 64/80 (80.00%), Postives = 67/80 (83.75%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDEGNDRYGRGINGG 636
            EDPTLPKPWR LVDGKTG LYFWNPET VTQYDRPTGS  P K  SAQ IS SVH+ QSSQG+ RPDEG+DRYGRG NGG
Sbjct:   16 EDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYDRPTGSAPPLKPSSAQSISSSVHVQQSSQGR-RPDEGDDRYGRGSNGG 94

[Close]

BLAST of MDP0000220512 vs. GDR
Match: ppa003975m ()

HSP 1 Score: 80.1073 bits (196), Expect = 9.039e-16
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1

Query:    1 MVNSPSDLPQLASDAIFCNPSDIATWVDSLLSEFNHQPLMSLPS 132
            MVNSP+DL QLASDA+  NPSD+ATWVDSLLSEFNHQPL+SLPS
Sbjct:   61 MVNSPNDLSQLASDAVLYNPSDLATWVDSLLSEFNHQPLISLPS 104

[Close]

BLAST of MDP0000220512 vs. GDR
Match: ppa000495m ()

HSP 1 Score: 64.6994 bits (156), Expect = 3.930e-11
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1

Query:  397 EDPTLPKPWRRLVDGKTGDLYFWNPETKVTQYDRPTGSVAP 519
            +DPTLP PW+ L+DG TG LY+WNPET +TQY++P     P
Sbjct:   14 DDPTLPNPWKGLIDGSTGLLYYWNPETNITQYEKPASLPPP 54

The following BLAST results are available for this feature:

BLAST of MDP0000220512 vs. NCBI nr
BLAST of MDP0000220512 vs. Vitis vinifera
BLAST of MDP0000220512 vs. ExPASy Swiss-Prot
BLAST of MDP0000220512 vs. ExPASy TrEMBL
BLAST of MDP0000220512 vs. TAIR10
BLAST of MDP0000220512 vs. Populus trichicarpa v2.0
BLAST of MDP0000220512 vs. GDR

BLAST of MDP0000220512 vs. NCBI nr
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs NCBI nr)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|357495795\|ref\|XP_003618186.1\|	1.129e-19	63.29	DEAD-box ATP-dependent RNA helicase [Medicago trun...	[more]
gi\|357495793\|ref\|XP_003618185.1\|	1.129e-19	63.29	DEAD-box ATP-dependent RNA helicase [Medicago trun...	[more]
gi\|255560866\|ref\|XP_002521446.1\|	9.558e-19	62.50	dead box ATP-dependent RNA helicase, putative [Ric...	[more]
gi\|224060117\|ref\|XP_002300045.1\|	4.016e-17	60.49	predicted protein [Populus trichocarpa] >gi\|222847...	[more]
gi\|359488684\|ref\|XP_003633801.1\|	8.946e-17	57.95	PREDICTED: DEAD-box ATP-dependent RNA helicase 46-...	[more]
gi\|359488682\|ref\|XP_002273908.2\|	8.946e-17	57.95	PREDICTED: DEAD-box ATP-dependent RNA helicase 46-...	[more]
gi\|356573317\|ref\|XP_003554808.1\|	8.946e-17	59.26	PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-depen...	[more]
gi\|296087641\|emb\|CBI34897.3\|	8.946e-17	57.95	unnamed protein product [Vitis vinifera]	[more]
gi\|224141279\|ref\|XP_002324002.1\|	8.946e-17	60.26	predicted protein [Populus trichocarpa] >gi\|222867...	[more]
gi\|356511678\|ref\|XP_003524550.1\|	4.440e-16	58.02	PREDICTED: DEAD-box ATP-dependent RNA helicase 46-...	[more]

Pages

BLAST of MDP0000220512 vs. Vitis vinifera
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs Vitis vinifera)
Total hits: 3


Match Name	E-value	Identity	Description
GSVIVT01032443001	2.566e-19	57.95	assembled CDS	[more]
GSVIVT01017652001	2.326e-12	63.41	assembled CDS	[more]
GSVIVT01015465001	1.667e-10	65.91	assembled CDS	[more]

BLAST of MDP0000220512 vs. ExPASy Swiss-Prot
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs UniProt Swiss-Prot)
Total hits: 6


Match Name	E-value	Identity	Description
RH46_ARATH	2.688e-16	51.22	DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop...	[more]
RH14_ARATH	1.926e-14	51.32	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop...	[more]
DB10_NICSY	6.197e-13	51.85	ATP-dependent RNA helicase-like protein DB10 OS=Ni...	[more]
RH14_ORYSJ	5.246e-12	82.86	DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sa...	[more]
RH40_ARATH	5.800e-11	72.22	DEAD-box ATP-dependent RNA helicase 40 OS=Arabidop...	[more]
RH40_ORYSJ	2.204e-10	71.43	DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa...	[more]

BLAST of MDP0000220512 vs. ExPASy TrEMBL
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs UniProt TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
G7KHJ2_MEDTR	1.222e-19	63.29	DEAD-box ATP-dependent RNA helicase OS=Medicago tr...	[more]
G7KHJ1_MEDTR	1.222e-19	63.29	DEAD-box ATP-dependent RNA helicase OS=Medicago tr...	[more]
B9S627_RICCO	1.035e-18	62.50	Dead box ATP-dependent RNA helicase, putative OS=R...	[more]
B9GI44_POPTR	4.347e-17	60.49	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
F6HUY4_VITVI	9.683e-17	57.95	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9IJL9_POPTR	9.683e-17	60.26	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
I1K1I4_SOYBN	4.806e-16	58.02	Uncharacterized protein OS=Glycine max GN=Gma.3724...	[more]
Q9SP26_PEA	8.197e-16	59.46	P72 DEAD box protein OS=Pisum sativum PE=2 SV=1	[more]
F4K6V1_ARATH	6.940e-15	51.22	DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop...	[more]
Q0HA68_MALDO	1.184e-14	43.80	DELLA protein OS=Malus domestica GN=L3b PE=2 SV=1	[more]

Pages

BLAST of MDP0000220512 vs. TAIR10
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs TAIR 10)
Total hits: 7


Match Name	E-value	Identity	Description
AT5G14610.2	2.679e-17	51.22	\| Symbols: \| DEAD box RNA helicase family protein...	[more]
AT5G14610.1	2.679e-17	51.22	\| Symbols: \| DEAD box RNA helicase family protein...	[more]
AT3G01540.4	1.920e-15	51.32	\| Symbols: DRH1, ATDRH1 \| DEAD box RNA helicase 1 ...	[more]
AT3G01540.3	1.920e-15	51.32	\| Symbols: DRH1, ATDRH1 \| DEAD box RNA helicase 1 ...	[more]
AT3G01540.1	1.920e-15	51.32	\| Symbols: DRH1, ATDRH1 \| DEAD box RNA helicase 1 ...	[more]
AT3G01540.2	1.920e-15	51.32	\| Symbols: DRH1, ATDRH1 \| DEAD box RNA helicase 1 ...	[more]
AT3G06480.1	5.781e-12	72.22	\| Symbols: \| DEAD box RNA helicase family protein...	[more]

BLAST of MDP0000220512 vs. Populus trichicarpa v2.0
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs Populus trichocarpa v2.0)
Total hits: 3


Match Name	E-value	Identity
POPTR_0001s35150.1	1.906e-19	60.49	[more]
POPTR_0017s10760.1	4.246e-19	60.26	[more]
POPTR_0010s16220.1	1.910e-11	68.29	[more]

BLAST of MDP0000220512 vs. GDR
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs Prunus persica v1.0)
Total hits: 4


Match Name	E-value	Identity
ppa002318m	8.997e-32	80.00	[more]
ppa002303m	8.997e-32	80.00	[more]
ppa003975m	9.039e-16	84.09	[more]
ppa000495m	3.930e-11	58.54	[more]

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW/Rsp5/WWP	GENE3D	2.20.70.10	no description	coord: 133..169 score: 7.1
IPR001202	WW/Rsp5/WWP	PFAM	PF00397	WW	coord: 137..167 score: 3
IPR001202	WW/Rsp5/WWP	SMART	SM00456	Domain with 2 conserved Trp (W) residues	coord: 136..169 score: 2.1
IPR001202	WW/Rsp5/WWP	PROSITE	PS01159	WW_DOMAIN_1	coord: 141..167 score
IPR001202	WW/Rsp5/WWP	PROFILE	PS50020	WW_DOMAIN_2	coord: 135..169 score: 11
IPR001202	WW/Rsp5/WWP	SUPERFAMILY	51045	WW domain	coord: 127..168 score: 2.3
IPR021914	Transcriptional factor DELLA, N-terminal	PFAM	PF12041	DELLA	coord: 6..41 score: 9.4
None	No IPR available	COIL	coil	coiled-coil	coord: 53..74 score
None	No IPR available	SEG	seg	seg	coord: 63..76 score
None	No IPR available	SEG	seg	seg	coord: 2..42 score
None	No IPR available	SEG	seg	seg	coord: 38..52 score
None	No IPR available	SEG	seg	seg	coord: 3..18 score: NAcoord: 42..54 score
None	No IPR available	SEG	seg	seg	coord: 7..29 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:22914206..22915169-
mRNA from alignment at MDC020336.137:13..976-
coding sequence from alignment at MDC020336.137:13..976-

mRNA sequence

>MDP0000220512 ID=MDP0000220512; Name=MDP0000220512; organism=Malus x domestica; type=mRNA; length=964bp
ATGGTCAATTCTCCTAGCGACCTCCCCCAGCTCGCCTCCGACGCCATCTT
CTGCAACCCCTCTGACATTGCCACCTGGGTCGACTCCCTCCTCTCCGAGT
TCAACCATCAGCCCCTCATGTCCCTCCCATCTGGGCCTGAGTCAAAAGCG
ACTGCAGTGAGTGGAATCATTGCTGTTTCGAGAATCCAGCATGGACGATC
TTGCTGAGTTTAAACTGGGGATTCGCATATCCACTAACCACAACTGAGTT
CACAACTCAGTCCACCTGGTGATTTGTTTGGTGATCAACTAACCACGGTA
GATCGTCTTGTTTCGATTCGGTGATTTTTGCTCCTCTATGGCACTCTTAT
CTTGGTTTTTTGCATTTGGGTCTTTTGGATCCAAATTGTTGGGTCCCTGA
TTGAGATCTTTTTTGTTGACCCATCAACTGAGGAATTGGTGTTTGAGGAA
TTGGGTATATCTCTACTTTCTAGAGTGCGAGGAGTTAAATAAGGTAATCG
ATTTTGCAGACGAAGGAGCAGAGCACGAAGAGGAAGAAGCAGAAGCACAA
AAGCTTCTGGACATGGCTGGCGACATCAGTTTTATTCAAGGGGTTCCGCC
ATCAGATCCCATCAGAGTTTTTTTCGTTCCTTCTGCTCTCCAAGACGACG
CCGTAAGGGTAGTGCACTCTTCCCATAACTGCCACTGCAACTATCGCTGG
TCATTGATATGCTCGGAGGACCCAACTCTTCCCAAACCATGGAGAAGACT
CGTTGATGGTAAAACTGGGGATCTTTACTTCTGGAACCCTGAGACCAAGG
TCACCCAATATGATAGGCCAACGGGTTCAGTTGCTCCATCAAAGSCTTAT
TCAGCACAGTTTATAAGCTTTTCAGTTCACATTCATCAATCTTCACAAGG
ACAATGTCGTCCTGATGAGGGAAATGATAGGTATGGCAGAGGCATCAATG
GTGGTCCAAGTTGA

protein sequence of MDP0000220512

>MDP0000220512 ID=MDP0000220512; Name=MDP0000220512; organism=Malus x domestica; type=polypeptide; length=214bp
MVNSPSDLPQLASDAIFCNPSDIATWVDSLLSEFNHQPLMSLPSGPESKA
TACEELNKVIDFADEGAEHEEEEAEAQKLLDMAGDISFIQGVPPSDPIRV
FFVPSALQDDAVRVVHSSHNCHCNYRWSLICSEDPTLPKPWRRLVDGKTG
DLYFWNPETKVTQYDRPTGSVAPSKXYSAQFISFSVHIHQSSQGQCRPDE
GNDRYGRGINGGPS

mRNA from alignment at chr6:22914206..22915169-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000220512 ID=MDP0000220512; Name=MDP0000220512; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr6:22914206..22915169- (Malus x domestica

mRNA from alignment at MDC020336.137:13..976-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000220512 ID=MDP0000220512; Name=MDP0000220512; organism=Malus x domestica; type=mRNA; length=964bp; location=Sequence derived from: MDC020336.137:13..976- (Malus x domestica
ATGGTCAATTCTCCTAGCGACCTCCCCCAGCTCGCCTCCGACGCCATCTT
CTGCAACCCCTCTGACATTGCCACCTGGGTCGACTCCCTCCTCTCCGAGT
TCAACCATCAGCCCCTCATGTCCCTCCCATCTGGGCCTGAGTCAAAAGCG
ACTGCAGTGAGTGGAATCATTGCTGTTTCGAGAATCCAGCATGGACGATC
TTGCTGAGTTTAAACTGGGGATTCGCATATCCACTAACCACAACTGAGTT
CACAACTCAGTCCACCTGGTGATTTGTTTGGTGATCAACTAACCACGGTA
GATCGTCTTGTTTCGATTCGGTGATTTTTGCTCCTCTATGGCACTCTTAT
CTTGGTTTTTTGCATTTGGGTCTTTTGGATCCAAATTGTTGGGTCCCTGA
TTGAGATCTTTTTTGTTGACCCATCAACTGAGGAATTGGTGTTTGAGGAA
TTGGGTATATCTCTACTTTCTAGAGTGCGAGGAGTTAAATAAGGTAATCG
ATTTTGCAGACGAAGGAGCAGAGCACGAAGAGGAAGAAGCAGAAGCACAA
AAGCTTCTGGACATGGCTGGCGACATCAGTTTTATTCAAGGGGTTCCGCC
ATCAGATCCCATCAGAGTTTTTTTCGTTCCTTCTGCTCTCCAAGACGACG
CCGTAAGGGTAGTGCACTCTTCCCATAACTGCCACTGCAACTATCGCTGG
TCATTGATATGCTCGGAGGACCCAACTCTTCCCAAACCATGGAGAAGACT
CGTTGATGGTAAAACTGGGGATCTTTACTTCTGGAACCCTGAGACCAAGG
TCACCCAATATGATAGGCCAACGGGTTCAGTTGCTCCATCAAAGSCTTAT
TCAGCACAGTTTATAAGCTTTTCAGTTCACATTCATCAATCTTCACAAGG
ACAATGTCGTCCTGATGAGGGAAATGATAGGTATGGCAGAGGCATCAATG
GTGGTCCAAGTTGA

Coding sequence (CDS) from alignment at MDC020336.137:13..976-

>MDP0000220512 ID=MDP0000220512; Name=MDP0000220512; organism=Malus x domestica; type=CDS; length=645bp; location=Sequence derived from: MDC020336.137:13..976- (Malus x domestica
ATGGTCAATTCTCCTAGCGACCTCCCCCAGCTCGCCTCCGACGCCATCTT
CTGCAACCCCTCTGACATTGCCACCTGGGTCGACTCCCTCCTCTCCGAGT
TCAACCATCAGCCCCTCATGTCCCTCCCATCTGGGCCTGAGTCAAAAGCG
ACTGCATGCGAGGAGTTAAATAAGGTAATCGATTTTGCAGACGAAGGAGC
AGAGCACGAAGAGGAAGAAGCAGAAGCACAAAAGCTTCTGGACATGGCTG
GCGACATCAGTTTTATTCAAGGGGTTCCGCCATCAGATCCCATCAGAGTT
TTTTTCGTTCCTTCTGCTCTCCAAGACGACGCCGTAAGGGTAGTGCACTC
TTCCCATAACTGCCACTGCAACTATCGCTGGTCATTGATATGCTCGGAGG
ACCCAACTCTTCCCAAACCATGGAGAAGACTCGTTGATGGTAAAACTGGG
GATCTTTACTTCTGGAACCCTGAGACCAAGGTCACCCAATATGATAGGCC
AACGGGTTCAGTTGCTCCATCAAAGSCTTATTCAGCACAGTTTATAAGCT
TTTCAGTTCACATTCATCAATCTTCACAAGGACAATGTCGTCCTGATGAG
GGAAATGATAGGTATGGCAGAGGCATCAATGGTGGTCCAAGTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001202	WW_dom
IPR021914	TF_DELLA_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding