MDP0000226971, MDP0000226971 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000226971
Unique Name	MDP0000226971
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1287

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr15	chromosome	chr15:5654469..5655755 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC029656.40	contig	MDC029656.40:13119..14405 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000226971_exon_1	MDP0000226971_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000226971	MDP0000226971	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 38..418 score: 9.2e
None	No IPR available	SEG	seg	seg	coord: 405..420 score
None	No IPR available	SEG	seg	seg	coord: 25..34 score
None	No IPR available	SEG	seg	seg	coord: 16..30 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:5654469..5655755+
mRNA from alignment at MDC029656.40:13119..14405+
coding sequence from alignment at MDC029656.40:13119..14405+

mRNA sequence

>MDP0000226971 ID=MDP0000226971; Name=MDP0000226971; organism=Malus x domestica; type=mRNA; length=1287bp
ATGGAAGGAAGCAACGAAGCTACACATGACTTCGAAAATCCTCGCATTCA
GTTAACAACTTCAATGAGTCARGAGTTGGATGGTTTGACTCCCTTGTCCG
CTTCGTGTTGCATCTACAAAGTTCCCGAACAACTACGGTGTGTAAATGAA
AAGGCCTACACACCTCAAGTAGTCTCTATAGGTCCGATTCACCATGGCAA
GAAAGGCTTAGAAGACATGGAAGAACACAAGAAGAGGTACCTGCAGTATT
TTTTATATCGGACTGGGGTCAGCTTGGAAGATTATGTAACGAAAATAAAG
GGCAAGGAAGAGAAATTGCGCAGTTGCTATGCKCACACCATTGAGTTGTG
CAGTGATGAATTTGTAAGAATCATTCTTGTGGATGCCGCGTTCATCATTG
AGCTCTTATTGAGGTACGGGGGGTATATCGTTCACGATAGCAATGACCGC
ATCTTTAACAAACCATGGTTGATAAATATTATATGTCCTGACATGCTTTT
GCTTGAAAATCAGCTGCCATTTTTCATTYTTGAGGATCTCTTTGCCACTG
CAGAGGTGCCGGCGACGGTGCCTTCAGTATTTGATCTCTCATACACTTAC
TGCAAGGTATCAACGAGTTTATATGTGAAAAGAGACGGTTTGGGATCTTC
TTCTAGTTTTAAAGTAGAGCATTTTGTTGATTTGGTTAGAACCTTAAATC
TACCAACGGATCAGGAAGAGAATGAAAATCGAGGGTCAGTCGAATCTCTA
GCTGTACCCAGTATGACGAAACTACACCAGGCTGGCGTCAAGTTTAAGGC
GAGATCAAGCAAGAATCTATTTGATATGTGTTTTCAAGAAGGGATTTTGG
AAATTCCAAATCTAAATATATCCGATAGCACGGAGCTTGTACTCCGAAAC
CTTGTTGCCTTTGAGCAATGCCATTGCACTCCAAATACCCGCTACTTTAA
TGATTATATCTTCCTCATGGATTATTTGGTGAACACCCCAAATGATGTGG
AATTGCTTGTCAAGAATGGAATTGTTGAAAATATGCTTGGTGACAACAAT
GAGGTGTCTACTCTGATCAACAGCCTTGGCAAAGGTGTTTTGGTGTTCAG
AGACGAATTCTATTATGCTACTCTTATGAAGGACCTCAACAAGTACTACG
AAAAGCCGTGGAACAAATGGAAGGCAGATCTGAAACATAAATATTTCAAC
ACACCTTGGAAAATTATTTCAGTCATTGCTGCTACTTTTATCATCATACT
CACTCTCATACAAACGGTGTCKTCTATTGCTAGCTAA

protein sequence of MDP0000226971

>MDP0000226971 ID=MDP0000226971; Name=MDP0000226971; organism=Malus x domestica; type=polypeptide; length=428bp
MEGSNEATHDFENPRIQLTTSMSQELDGLTPLSASCCIYKVPEQLRCVNE
KAYTPQVVSIGPIHHGKKGLEDMEEHKKRYLQYFLYRTGVSLEDYVTKIK
GKEEKLRSCYAHTIELCSDEFVRIILVDAAFIIELLLRYGGYIVHDSNDR
IFNKPWLINIICPDMLLLENQLPFFIXEDLFATAEVPATVPSVFDLSYTY
CKVSTSLYVKRDGLGSSSSFKVEHFVDLVRTLNLPTDQEENENRGSVESL
AVPSMTKLHQAGVKFKARSSKNLFDMCFQEGILEIPNLNISDSTELVLRN
LVAFEQCHCTPNTRYFNDYIFLMDYLVNTPNDVELLVKNGIVENMLGDNN
EVSTLINSLGKGVLVFRDEFYYATLMKDLNKYYEKPWNKWKADLKHKYFN
TPWKIISVIAATFIIILTLIQTVSSIAS

mRNA from alignment at chr15:5654469..5655755+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000226971 ID=MDP0000226971; Name=MDP0000226971; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:5654469..5655755+ (Malus x domestica

mRNA from alignment at MDC029656.40:13119..14405+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000226971 ID=MDP0000226971; Name=MDP0000226971; organism=Malus x domestica; type=mRNA; length=1287bp; location=Sequence derived from: MDC029656.40:13119..14405+ (Malus x domestica
ATGGAAGGAAGCAACGAAGCTACACATGACTTCGAAAATCCTCGCATTCA
GTTAACAACTTCAATGAGTCARGAGTTGGATGGTTTGACTCCCTTGTCCG
CTTCGTGTTGCATCTACAAAGTTCCCGAACAACTACGGTGTGTAAATGAA
AAGGCCTACACACCTCAAGTAGTCTCTATAGGTCCGATTCACCATGGCAA
GAAAGGCTTAGAAGACATGGAAGAACACAAGAAGAGGTACCTGCAGTATT
TTTTATATCGGACTGGGGTCAGCTTGGAAGATTATGTAACGAAAATAAAG
GGCAAGGAAGAGAAATTGCGCAGTTGCTATGCKCACACCATTGAGTTGTG
CAGTGATGAATTTGTAAGAATCATTCTTGTGGATGCCGCGTTCATCATTG
AGCTCTTATTGAGGTACGGGGGGTATATCGTTCACGATAGCAATGACCGC
ATCTTTAACAAACCATGGTTGATAAATATTATATGTCCTGACATGCTTTT
GCTTGAAAATCAGCTGCCATTTTTCATTYTTGAGGATCTCTTTGCCACTG
CAGAGGTGCCGGCGACGGTGCCTTCAGTATTTGATCTCTCATACACTTAC
TGCAAGGTATCAACGAGTTTATATGTGAAAAGAGACGGTTTGGGATCTTC
TTCTAGTTTTAAAGTAGAGCATTTTGTTGATTTGGTTAGAACCTTAAATC
TACCAACGGATCAGGAAGAGAATGAAAATCGAGGGTCAGTCGAATCTCTA
GCTGTACCCAGTATGACGAAACTACACCAGGCTGGCGTCAAGTTTAAGGC
GAGATCAAGCAAGAATCTATTTGATATGTGTTTTCAAGAAGGGATTTTGG
AAATTCCAAATCTAAATATATCCGATAGCACGGAGCTTGTACTCCGAAAC
CTTGTTGCCTTTGAGCAATGCCATTGCACTCCAAATACCCGCTACTTTAA
TGATTATATCTTCCTCATGGATTATTTGGTGAACACCCCAAATGATGTGG
AATTGCTTGTCAAGAATGGAATTGTTGAAAATATGCTTGGTGACAACAAT
GAGGTGTCTACTCTGATCAACAGCCTTGGCAAAGGTGTTTTGGTGTTCAG
AGACGAATTCTATTATGCTACTCTTATGAAGGACCTCAACAAGTACTACG
AAAAGCCGTGGAACAAATGGAAGGCAGATCTGAAACATAAATATTTCAAC
ACACCTTGGAAAATTATTTCAGTCATTGCTGCTACTTTTATCATCATACT
CACTCTCATACAAACGGTGTCKTCTATTGCTAGCTAA

Coding sequence (CDS) from alignment at MDC029656.40:13119..14405+

>MDP0000226971 ID=MDP0000226971; Name=MDP0000226971; organism=Malus x domestica; type=CDS; length=1287bp; location=Sequence derived from: MDC029656.40:13119..14405+ (Malus x domestica
ATGGAAGGAAGCAACGAAGCTACACATGACTTCGAAAATCCTCGCATTCA
GTTAACAACTTCAATGAGTCARGAGTTGGATGGTTTGACTCCCTTGTCCG
CTTCGTGTTGCATCTACAAAGTTCCCGAACAACTACGGTGTGTAAATGAA
AAGGCCTACACACCTCAAGTAGTCTCTATAGGTCCGATTCACCATGGCAA
GAAAGGCTTAGAAGACATGGAAGAACACAAGAAGAGGTACCTGCAGTATT
TTTTATATCGGACTGGGGTCAGCTTGGAAGATTATGTAACGAAAATAAAG
GGCAAGGAAGAGAAATTGCGCAGTTGCTATGCKCACACCATTGAGTTGTG
CAGTGATGAATTTGTAAGAATCATTCTTGTGGATGCCGCGTTCATCATTG
AGCTCTTATTGAGGTACGGGGGGTATATCGTTCACGATAGCAATGACCGC
ATCTTTAACAAACCATGGTTGATAAATATTATATGTCCTGACATGCTTTT
GCTTGAAAATCAGCTGCCATTTTTCATTYTTGAGGATCTCTTTGCCACTG
CAGAGGTGCCGGCGACGGTGCCTTCAGTATTTGATCTCTCATACACTTAC
TGCAAGGTATCAACGAGTTTATATGTGAAAAGAGACGGTTTGGGATCTTC
TTCTAGTTTTAAAGTAGAGCATTTTGTTGATTTGGTTAGAACCTTAAATC
TACCAACGGATCAGGAAGAGAATGAAAATCGAGGGTCAGTCGAATCTCTA
GCTGTACCCAGTATGACGAAACTACACCAGGCTGGCGTCAAGTTTAAGGC
GAGATCAAGCAAGAATCTATTTGATATGTGTTTTCAAGAAGGGATTTTGG
AAATTCCAAATCTAAATATATCCGATAGCACGGAGCTTGTACTCCGAAAC
CTTGTTGCCTTTGAGCAATGCCATTGCACTCCAAATACCCGCTACTTTAA
TGATTATATCTTCCTCATGGATTATTTGGTGAACACCCCAAATGATGTGG
AATTGCTTGTCAAGAATGGAATTGTTGAAAATATGCTTGGTGACAACAAT
GAGGTGTCTACTCTGATCAACAGCCTTGGCAAAGGTGTTTTGGTGTTCAG
AGACGAATTCTATTATGCTACTCTTATGAAGGACCTCAACAAGTACTACG
AAAAGCCGTGGAACAAATGGAAGGCAGATCTGAAACATAAATATTTCAAC
ACACCTTGGAAAATTATTTCAGTCATTGCTGCTACTTTTATCATCATACT
CACTCTCATACAAACGGTGTCKTCTATTGCTAGCTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln